BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G11360.1
Length=953
Score E
Sequences producing significant alignments: (Bits) Value
Ahg325665 jgi|Araly1|325665|fgenesh1_pm.C_scaffold_6000885 760 0.0
> Ahg325665 jgi|Araly1|325665|fgenesh1_pm.C_scaffold_6000885
Length=609
Score = 760 bits (411), Expect = 0.0
Identities = 542/602 (90%), Gaps = 22/602 (4%)
Strand=Plus/Plus
Query 97 ATGGGAAACATTGTCAAGCCTTTCAAGCAACAACCTTCTTCTTTTGCTTACCAGCCTCTC 156
|||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1 ATGGGAAACATTGTAAAGCCTTTCAAACAACAACCTTCTTCATTTGCTTACCAGCCTCTC 60
Query 157 ACCGTCCCTCTAATTCCAGAAGTGGAGGCACAAAGCGAGAATCTGAGAGTCTTCAGTTTC 216
||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 61 ACCGTCCCTCTAATTTCAGAAGTGGAGGCACAAAACGAGAATCTGAGAGTCTTCAGCTTC 120
Query 217 AAGGAATGGATGAAAGCAACGAAGAAATCCAGACAAGACAGGGTCGTAA-TTCGCGATGA 275
|||||||||||||||||||||||||||| ||||||||||||||||| || || |||| |
Sbjct 121 AAGGAATGGATGAAAGCAACGAAGAAATACAGACAAGACAGGGTCG-AACTTTGCGACAA 179
Query 276 TCACTATATTCGA--T----CATTCTACAAGGGCTACATCGATAACACCACATTTGCACC 329
|| |||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TCCCTATATTCGATTTCGAACATTCTACAAGGGCTACATCGATAACACCACATTTGCACC 239
Query 330 ATCAAGAACTAAAACCGGTACCCCTGTTTCTGTTGTCGAATATCTTCATGGCAGTTCACA 389
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 240 ATCAAGAACTAAAACCGGTACCCCTGTTTCTGTTGTCGAATATCTTCATAAAAGTTCACA 299
Query 390 GGCTCTACAAGAGTGGGTGG---A------CATATTTGGCGTGATCTTGCTTGAGCTTTT 440
|||||||||||||||||||| | ||||||||||||||||||||||||| ||||
Sbjct 300 GGCTCTACAAGAGTGGGTGGCCGATGTTTACATATTTGGCGTGATCTTGCTTGAGATTTT 359
Query 441 AGTTGGTTC-ACAAGATAGATCAACAGCTTTGAAGAATCAAAGCTC--A-GATTGGACTG 496
|| |||||| | ||| |||||||| | | |||||||||||||||| | ||||||||||
Sbjct 360 AGCTGGTTCGA-AAGCTAGATCAAGAAATATGAAGAATCAAAGCTCCGATGATTGGACTG 418
Query 497 GGTCTTTCTTGCCCGATAATTATAAGATTGGGGAAATAATCGACCCCCGAATAGGAAGCG 556
| ||||||||||||||||||||||| |||| |||||||||||| |||||| ||||||| |
Sbjct 419 GATCTTTCTTGCCCGATAATTATAAAATTGAGGAAATAATCGATCCCCGACTAGGAAGTG 478
Query 557 ATTATCCTGTGGATGCGGCCACAAAGATTGTCACACTCATCCAAAGATGCACCAATCGGG 616
||||||||||||||||||| |||| ||| ||||||||||||||||| |||||||| ||||
Sbjct 479 ATTATCCTGTGGATGCGGCAACAATGATGGTCACACTCATCCAAAGTTGCACCAAGCGGG 538
Query 617 ACAAGAAGAAACGACCATTGATGCAAGAAGTTTTGGATGCTCTGAATTATATTGCAGGGA 676
|||||||||| |||||| |||||||| |||||||||||| ||||||| ||||||||| ||
Sbjct 539 ACAAGAAGAATCGACCACTGATGCAACAAGTTTTGGATGTTCTGAATAATATTGCAGAGA 598
Query 677 TT 678
||
Sbjct 599 TT 600
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35378066976
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5