BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G11360.1 Length=953 Score E Sequences producing significant alignments: (Bits) Value Ahg325665 jgi|Araly1|325665|fgenesh1_pm.C_scaffold_6000885 760 0.0 > Ahg325665 jgi|Araly1|325665|fgenesh1_pm.C_scaffold_6000885 Length=609 Score = 760 bits (411), Expect = 0.0 Identities = 542/602 (90%), Gaps = 22/602 (4%) Strand=Plus/Plus Query 97 ATGGGAAACATTGTCAAGCCTTTCAAGCAACAACCTTCTTCTTTTGCTTACCAGCCTCTC 156 |||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||| Sbjct 1 ATGGGAAACATTGTAAAGCCTTTCAAACAACAACCTTCTTCATTTGCTTACCAGCCTCTC 60 Query 157 ACCGTCCCTCTAATTCCAGAAGTGGAGGCACAAAGCGAGAATCTGAGAGTCTTCAGTTTC 216 ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||| Sbjct 61 ACCGTCCCTCTAATTTCAGAAGTGGAGGCACAAAACGAGAATCTGAGAGTCTTCAGCTTC 120 Query 217 AAGGAATGGATGAAAGCAACGAAGAAATCCAGACAAGACAGGGTCGTAA-TTCGCGATGA 275 |||||||||||||||||||||||||||| ||||||||||||||||| || || |||| | Sbjct 121 AAGGAATGGATGAAAGCAACGAAGAAATACAGACAAGACAGGGTCG-AACTTTGCGACAA 179 Query 276 TCACTATATTCGA--T----CATTCTACAAGGGCTACATCGATAACACCACATTTGCACC 329 || |||||||||| | |||||||||||||||||||||||||||||||||||||||| Sbjct 180 TCCCTATATTCGATTTCGAACATTCTACAAGGGCTACATCGATAACACCACATTTGCACC 239 Query 330 ATCAAGAACTAAAACCGGTACCCCTGTTTCTGTTGTCGAATATCTTCATGGCAGTTCACA 389 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 240 ATCAAGAACTAAAACCGGTACCCCTGTTTCTGTTGTCGAATATCTTCATAAAAGTTCACA 299 Query 390 GGCTCTACAAGAGTGGGTGG---A------CATATTTGGCGTGATCTTGCTTGAGCTTTT 440 |||||||||||||||||||| | ||||||||||||||||||||||||| |||| Sbjct 300 GGCTCTACAAGAGTGGGTGGCCGATGTTTACATATTTGGCGTGATCTTGCTTGAGATTTT 359 Query 441 AGTTGGTTC-ACAAGATAGATCAACAGCTTTGAAGAATCAAAGCTC--A-GATTGGACTG 496 || |||||| | ||| |||||||| | | |||||||||||||||| | |||||||||| Sbjct 360 AGCTGGTTCGA-AAGCTAGATCAAGAAATATGAAGAATCAAAGCTCCGATGATTGGACTG 418 Query 497 GGTCTTTCTTGCCCGATAATTATAAGATTGGGGAAATAATCGACCCCCGAATAGGAAGCG 556 | ||||||||||||||||||||||| |||| |||||||||||| |||||| ||||||| | Sbjct 419 GATCTTTCTTGCCCGATAATTATAAAATTGAGGAAATAATCGATCCCCGACTAGGAAGTG 478 Query 557 ATTATCCTGTGGATGCGGCCACAAAGATTGTCACACTCATCCAAAGATGCACCAATCGGG 616 ||||||||||||||||||| |||| ||| ||||||||||||||||| |||||||| |||| Sbjct 479 ATTATCCTGTGGATGCGGCAACAATGATGGTCACACTCATCCAAAGTTGCACCAAGCGGG 538 Query 617 ACAAGAAGAAACGACCATTGATGCAAGAAGTTTTGGATGCTCTGAATTATATTGCAGGGA 676 |||||||||| |||||| |||||||| |||||||||||| ||||||| ||||||||| || Sbjct 539 ACAAGAAGAATCGACCACTGATGCAACAAGTTTTGGATGTTCTGAATAATATTGCAGAGA 598 Query 677 TT 678 || Sbjct 599 TT 600 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35378066976 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5