BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G11400.2
Length=915
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487973 jgi|Araly1|487973|fgenesh2_kg.6__1107__AT5G11400.1 669 0.0
> Ahg487973 jgi|Araly1|487973|fgenesh2_kg.6__1107__AT5G11400.1
Length=876
Score = 669 bits (362), Expect = 0.0
Identities = 469/516 (91%), Gaps = 26/516 (5%)
Strand=Plus/Plus
Query 1 ATGGGAAACTGTCTAAAGCATTTCAAACAACAACTT-CCTTCAATTGCTCCCAAGCCTCT 59
|||||||| | |||||||||| |||||||||||||| |||| | ||||||||||||||||
Sbjct 1 ATGGGAAATTCTCTAAAGCATCTCAAACAACAACTTCCCTT-ACTTGCTCCCAAGCCTCT 59
Query 60 CATTATCCCTCCAATA-TTT---T------------C-AGAATCTGAGAGTCTTCAGATT 102
| |||||||||||||| ||| | | ||||||||||||||||||||||
Sbjct 60 CCTTATCCCTCCAATATTTTCAGTGGAGCCAGAAAACGAGAATCTGAGAGTCTTCAGATT 119
Query 103 CGCGGA-TTGAAGAAAGCGACAAAGAAATTCAGACAAGACAGGGTCGTAGAATGCGAGGA 161
|||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 120 CGCGGATTTGAAGAAAGCAACGAAGAAATTCAGACAAGACAGGGTCGTAGAATGCGAGGA 179
Query 162 TTACTCTGTTCGAAAATTCTACAAGGGCTACATAGATGAAACCACATTTGCACCATCAAG 221
| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TGGCTCTGTTCGAAAATTCCACAAGGGCTACATAGATGAAACCACATTTGCACCATCAAG 239
Query 222 -AG--CTGGAACCGGAATCGCTGTTTCTGTCATGGAATGTGATAGTTCACGCTCTTTACA 278
|| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 240 AAGAACTGGAGCCGGAATCGCTGTTTCTGTCATGGAATGTGATAGTTCACGCTCTCTACA 299
Query 279 AGACTGGATGGCAGTAGTGAGGTCTCTTGGACAGTTGTCTCATCAGAATTTGGTCAATTT 338
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||
Sbjct 300 AGACTGGATGGCAGTAGTGAGGTCTCTTGGACAGATGTCACATCAGAATTTGGTCGATTT 359
Query 339 CTTGGGTTACTGTTGTGAAGACAACAAACCATTCTTCTTGGTATTTGAATACTCGCACAA 398
|||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 360 CTTGGGTTACTGTTATGAAGACAACAAACCACTCTTCTTGGTTTTTGAATACTCGCACAA 419
Query 399 AGGAAGTTTGGACAGTCACATTTTCGGAAAAGAAGAAGAGGCATTGCCATGGGAAATACG 458
||||||| ||||| |||||||||||||||||||||| | | |||||||||||||||||||
Sbjct 420 AGGAAGTCTGGACCGTCACATTTTCGGAAAAGAAGA-G-G-CATTGCCATGGGAAATACG 476
Query 459 GGTTAAGATAGCCATTGGAACAGCTCAAGGTCTCGC 494
|||||||||||||||||||||||||||||||||||
Sbjct 477 TGTTAAGATAGCCATTGGAACAGCTCAAGGTCTCGC 512
Score = 292 bits (158), Expect = 2e-78
Identities = 191/207 (92%), Gaps = 2/207 (1%)
Strand=Plus/Plus
Query 710 TAGATTACTGGACCT-CATCTTTCTTGCCAGATAATTATAAGATTGAGGAAATAATCGAT 768
|||||| ||||| || ||||| ||||||| |||| |||||||||||||||||||||||||
Sbjct 671 TAGATTTCTGGA-CTACATCTCTCTTGCCCGATAGTTATAAGATTGAGGAAATAATCGAT 729
Query 769 CCCCGACTTGGGAGCGATTATTCTGCGAATGCGGCGACACAGATGGGCACACTCATCAAC 828
||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 730 CCCCGGCTTGGGAACGATTATTCTGCGAATGCGGCTACACAGATGGGCACACTCATCAAC 789
Query 829 CGATGCACAGCGCATAATACAAAGAAACGGCCATTGATGCAACAAGTATTGGATGGTCTT 888
||||||||||||||| | ||||||||||| ||||||||||| ||||| |||||||||||
Sbjct 790 CGATGCACAGCGCATGACACAAAGAAACGACCATTGATGCAGCAAGTTTTGGATGGTCTG 849
Query 889 AATCATATTGCAGAGATTAAGGACTAA 915
||| |||||||||||||||||||||||
Sbjct 850 AATTATATTGCAGAGATTAAGGACTAA 876
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33929396130
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5