BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G11410.1
Length=1011
Score E
Sequences producing significant alignments: (Bits) Value
Ahg325669 jgi|Araly1|325669|fgenesh1_pm.C_scaffold_6000889 1517 0.0
> Ahg325669 jgi|Araly1|325669|fgenesh1_pm.C_scaffold_6000889
Length=1005
Score = 1517 bits (821), Expect = 0.0
Identities = 950/1012 (94%), Gaps = 10/1012 (1%)
Strand=Plus/Plus
Query 1 ATGGGAAACTGTCTAAAGCCTCTCAAAGAACAACCTCCTTCAGCTTCTCCCAAGCCTCTC 60
|||||||||||||||||||||||| | ||||| || ||||||||||||||||||||
Sbjct 1 ATGGGAAACTGTCTAAAGCCTCTC-----A-AACCTTCTCCAGCTTCTCCCAAGCCTCTC 54
Query 61 A-CCATCCCTTCAAGTTCAGTGGAGCCAGTAAAGGAGAATTTGAAAGAGTTTAGATTTGC 119
| | || ||| ||| ||||| |||| ||| ||| ||| |||||| |||||| || ||||
Sbjct 55 ATCAAT-CCTCCAATTTCAGGGGAGTCAGAAAATGAGTATTTGAGAGAGTTCAGCTTTG- 112
Query 120 CG-AATTGAACAAGGCAACAAAGAGATTCAGAAAATACATGGTCATAAAAGGTAATGATA 178
|| |||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 113 CGAAATTGAGCAAGGCAACAAAGAAATTCAGACAATACATGGTCATAAAAGGTAATGATA 172
Query 179 ATGGGTTTACTCGAACATTCTACGAAGGCTGCATCAATGAGACAACCTTTGCTCCATCAA 238
| || | |||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 173 ACGGATGTACTCGAACATTCTACCAAGGCTACATCAATGAGACAACCTTTGCTCCATCAA 232
Query 239 GAACTGGAATCACTGTTTCTGTCATGGAATGTTATCAAGATAATTCGCAGACTCTACAAG 298
||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 233 GAACTGGAATCGCTGTCTCTGTCTTGGAATGTTATCAAGATAATTCGCAGACTCTACAAG 292
Query 299 ACTGGAAGGAAGAAGTGAAGTCTCTTGGACGTATTTCTCATCCCAATTTAGTCAAACTTT 358
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 293 ATTGGAAGGAAGAAGTGAAGTCTCTTGGACGTATTTCTCATCCCAATTTAGTCAAGCTTT 352
Query 359 TAGGCTATTGTTGTGAAGAAAACAAATCATTCTTAGTTTTCGAATACTTGCATAAAGGAA 418
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 353 TAGGCTATTGTTGTGAAGAAAATAAATCATTCTTAGTTTTCGAATACTTGCATAAAGGAA 412
Query 419 GTTTGAACCGTTACATTTTCGGAAAAGAAGAAGAAGCATTACCGTGGGAAACACGGGTCA 478
||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 413 GTTTGGACCGTCACATTTTCGGAAAAGAAGAAGAAGCATTGCCGTGGGAAACACGGGTCA 472
Query 479 AGATAGCCATAGGAGCAGCTCAAAGTATTGCATTTCTACATTGGGTCAAGAACAGCGCGC 538
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 473 AGATAGCCATAGGAGCAGCTCAAAGTATTGCATTTCTACATTCTGTCAAGAACAGCGCGC 532
Query 539 TATATCGAGAACTCAGAATGTATAACATTTTGCTTGACGAGCACTACAACACAAAATTGT 598
| ||||| ||||||||||||| ||||||||||||||||||| ||||||| ||||||||||
Sbjct 533 TTTATCGTGAACTCAGAATGTTTAACATTTTGCTTGACGAGAACTACAATACAAAATTGT 592
Query 599 TCTATCTTGGATCAAAGAAACTATGTTTGTTAGAAGAAAGCGTGACGACTGCATTCATAG 658
|||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 593 TCTATCTTGGATCAAAGAAACTATGTCTGTTAGAAGAAAGTGTGACGACTGCATTCATAG 652
Query 659 GAAGAACTGTATATATACCTCCTGAATATGTAATCTCAGGTCATTTGGGAACGAAGAGTG 718
|||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 653 GAAGAACTGTATATTTAGCTCCTGAATATATAATCTCAGGTCATTTGGGAACGAAGAGTG 712
Query 719 ATGTGTATACATTTGGTGTGATATTGTTAGAGATTTTAACTGGTTTGAAAGCTTCAGATG 778
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 713 ATGTGTATACATTTGGTGTGATCTTGTTTGAGATTTTAACTGGTTTGAAAGCTTCAGATG 772
Query 779 GTAAAAAGAATGAGAACATGCAAAGCTTACATGTATGGACTAAACCTTTCTTGTCTGATC 838
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 773 GTAAAAAGAATGAGAACATGCAAAGCTTACATATCTGGACTAAACCTTTCTTGTCTGATC 832
Query 839 AATCTAAAATCCGGGAAATCATCGATCCTCGACTTGGGAACGATTATCCTGTGAATGCAG 898
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 833 AATCTAAAATCCGGGAAATCATCGATCCTCGACTTGGTAATGATTATCCTGTGAATGCAG 892
Query 899 CGACACAAATGGGAAAACTCATCAAAAGATGCATCAAGTTGGACACAAGGAAACGACCAT 958
|||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 893 CGACGCAGATGGGAAAACTCATCAAAAGATGCATCAAGTTGGACACGAGGAAACGACCAT 952
Query 959 CGATGCAACAAGTCTTTGATGGTTTGAATGATATTGCAGAGATTAAAGATTA 1010
| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 953 CTATGCAACAAGTCTTTGATGGTTTGAATGATATTGCAGAGATTAAAGATTA 1004
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37589196162
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5