BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G11412.1

Length=851
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg487975 jgi|Araly1|487975|fgenesh2_kg.6__1109__AT5G11412.1         566    1e-160


> Ahg487975 jgi|Araly1|487975|fgenesh2_kg.6__1109__AT5G11412.1
Length=673

 Score =  566 bits (306),  Expect = 1e-160
 Identities = 430/488 (88%), Gaps = 15/488 (3%)
 Strand=Plus/Plus

Query  55   TTTCT-AATTGTTGGAACTTTCTTGTCACTAAtttt-tt-ttGATAC-TTGTGACAGAGA  110
            |||||  |||||||| |||||||| | |||  |||| || || | || ||||||||||||
Sbjct  16   TTTCTCGATTGTTGGGACTTTCTTTTTACT-TTTTTCTTCTTAAGACTTTGTGACAGAGA  74

Query  111  CGTGGCTCAACATTACGCGAACGAAAACGTTGACACTAGATACACTAAGATATACGTGGG  170
            | |||||||||||||||||||| ||||||| ||||| |||||||| ||||||||||||||
Sbjct  75   CATGGCTCAACATTACGCGAACCAAAACGTCGACACGAGATACACCAAGATATACGTGGG  134

Query  171  AGGTCTGCCTTGGGAAACAAGAAACGAAGGTTTGAGAAGTTACTTCGAACAATTTGGAGA  230
            |||| |||||||| |||||||||| |||||||||| ||| |||||| |||||||||||||
Sbjct  135  AGGTTTGCCTTGGAAAACAAGAAATGAAGGTTTGAAAAGCTACTTCCAACAATTTGGAGA  194

Query  231  TATTATACATGTTAATATGGTTTGCGATAGAGAAACGGGACGATCAGAGGGTTATGGTTT  290
             ||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct  195  AATTATCCATGTTAATGTGGTTTGTGATAGAGAAACGGGACGATCAGAGGGTTATGGTTT  254

Query  291  TGTCACGTTTAGAGATGCTGAATCTGCAACGAGAGCTTGCCAGAATCCAAAACCGGTCAT  350
            ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct  255  TGTCACGTTTAGAGATGTTGAATCTGCAACGAGAGTTTGCCAGAATCCAAAACCGGTCAT  314

Query  351  AGACGGACGAGAGGCCAAGTGCAATCTTGCTTATATTGGTGGTAGGGTTAACAATAACCA  410
            |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct  315  AGACGGACGAGAGGCCAAGTGCAACCTTGCTTATATTGGTGCTAGGGTTAACAATAACCA  374

Query  411  AAACGCCCAACAACAACAAGTACTACCTATGTACCCAACTGGGACCAGTTTCCAC----C  466
            |||||||||||||  | |||| |||  |  |||||||||||| ||||||||| |     |
Sbjct  375  AAACGCCCAACAAGTAGAAGT-CTA--T--GTACCCAACTGGAACCAGTTTC-AGTTTGC  428

Query  467  ACCCCAATATCATACCTACACACCTTATGGTTATTGGACACCCCATGGCCCTTACTACGT  526
            |||  ||||| || ||||||||| || | ||||||||||||  |||||  |||||| |||
Sbjct  429  ACCAGAATATGATCCCTACACACTTTGTTGTTATTGGACACAACATGGTTCTTACTGCGT  488

Query  527  GAACCAAC  534
            ||||||||
Sbjct  489  GAACCAAC  496



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31489529442


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5