BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G11412.1 Length=851 Score E Sequences producing significant alignments: (Bits) Value Ahg487975 jgi|Araly1|487975|fgenesh2_kg.6__1109__AT5G11412.1 566 1e-160 > Ahg487975 jgi|Araly1|487975|fgenesh2_kg.6__1109__AT5G11412.1 Length=673 Score = 566 bits (306), Expect = 1e-160 Identities = 430/488 (88%), Gaps = 15/488 (3%) Strand=Plus/Plus Query 55 TTTCT-AATTGTTGGAACTTTCTTGTCACTAAtttt-tt-ttGATAC-TTGTGACAGAGA 110 ||||| |||||||| |||||||| | ||| |||| || || | || |||||||||||| Sbjct 16 TTTCTCGATTGTTGGGACTTTCTTTTTACT-TTTTTCTTCTTAAGACTTTGTGACAGAGA 74 Query 111 CGTGGCTCAACATTACGCGAACGAAAACGTTGACACTAGATACACTAAGATATACGTGGG 170 | |||||||||||||||||||| ||||||| ||||| |||||||| |||||||||||||| Sbjct 75 CATGGCTCAACATTACGCGAACCAAAACGTCGACACGAGATACACCAAGATATACGTGGG 134 Query 171 AGGTCTGCCTTGGGAAACAAGAAACGAAGGTTTGAGAAGTTACTTCGAACAATTTGGAGA 230 |||| |||||||| |||||||||| |||||||||| ||| |||||| ||||||||||||| Sbjct 135 AGGTTTGCCTTGGAAAACAAGAAATGAAGGTTTGAAAAGCTACTTCCAACAATTTGGAGA 194 Query 231 TATTATACATGTTAATATGGTTTGCGATAGAGAAACGGGACGATCAGAGGGTTATGGTTT 290 ||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||| Sbjct 195 AATTATCCATGTTAATGTGGTTTGTGATAGAGAAACGGGACGATCAGAGGGTTATGGTTT 254 Query 291 TGTCACGTTTAGAGATGCTGAATCTGCAACGAGAGCTTGCCAGAATCCAAAACCGGTCAT 350 ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| Sbjct 255 TGTCACGTTTAGAGATGTTGAATCTGCAACGAGAGTTTGCCAGAATCCAAAACCGGTCAT 314 Query 351 AGACGGACGAGAGGCCAAGTGCAATCTTGCTTATATTGGTGGTAGGGTTAACAATAACCA 410 |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| Sbjct 315 AGACGGACGAGAGGCCAAGTGCAACCTTGCTTATATTGGTGCTAGGGTTAACAATAACCA 374 Query 411 AAACGCCCAACAACAACAAGTACTACCTATGTACCCAACTGGGACCAGTTTCCAC----C 466 ||||||||||||| | |||| ||| | |||||||||||| ||||||||| | | Sbjct 375 AAACGCCCAACAAGTAGAAGT-CTA--T--GTACCCAACTGGAACCAGTTTC-AGTTTGC 428 Query 467 ACCCCAATATCATACCTACACACCTTATGGTTATTGGACACCCCATGGCCCTTACTACGT 526 ||| ||||| || ||||||||| || | |||||||||||| ||||| |||||| ||| Sbjct 429 ACCAGAATATGATCCCTACACACTTTGTTGTTATTGGACACAACATGGTTCTTACTGCGT 488 Query 527 GAACCAAC 534 |||||||| Sbjct 489 GAACCAAC 496 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31489529442 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5