BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G11416.1 Length=231 Score E Sequences producing significant alignments: (Bits) Value Ahg487976 jgi|Araly1|487976|fgenesh2_kg.6__1110__AT5G11416.1 233 3e-61 > Ahg487976 jgi|Araly1|487976|fgenesh2_kg.6__1110__AT5G11416.1 Length=195 Score = 233 bits (126), Expect = 3e-61 Identities = 161/177 (91%), Gaps = 6/177 (3%) Strand=Plus/Plus Query 60 AGAAACAGAGCGCTTAAGCTACCGTCGTGCCACTGTCTCTCATCACCC-T-TCTC---TT 114 |||||||||||||| |||| ||||||||||||||||||||| |||||| | |||| || Sbjct 20 AGAAACAGAGCGCTAAAGCCACCGTCGTGCCACTGTCTCTCCTCACCCTTCTCTCTTATT 79 Query 115 ACATGCAACACTTCTTTTACTATCTCACGGGCCCATGACCCGACTTACACCACTTATAAC 174 |||| ||||||||||||||| |||||||| |||||| |||||||| ||||||||||||| Sbjct 80 ACATACAACACTTCTTTTACCCTCTCACGGCCCCATGTCCCGACTT-CACCACTTATAAC 138 Query 175 AAAGCAGACACAATTTATGGATCATATATTATATCATTCAATGACAAATTCTTATAG 231 |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| Sbjct 139 AAAGCAGACACAATTTATGGATCATATAATATATCATTCAATGACAAATTATTATAG 195 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 7943158288 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5