BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G11416.1

Length=231
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg487976 jgi|Araly1|487976|fgenesh2_kg.6__1110__AT5G11416.1         233    3e-61


> Ahg487976 jgi|Araly1|487976|fgenesh2_kg.6__1110__AT5G11416.1
Length=195

 Score =  233 bits (126),  Expect = 3e-61
 Identities = 161/177 (91%), Gaps = 6/177 (3%)
 Strand=Plus/Plus

Query  60   AGAAACAGAGCGCTTAAGCTACCGTCGTGCCACTGTCTCTCATCACCC-T-TCTC---TT  114
            |||||||||||||| |||| ||||||||||||||||||||| |||||| | ||||   ||
Sbjct  20   AGAAACAGAGCGCTAAAGCCACCGTCGTGCCACTGTCTCTCCTCACCCTTCTCTCTTATT  79

Query  115  ACATGCAACACTTCTTTTACTATCTCACGGGCCCATGACCCGACTTACACCACTTATAAC  174
            |||| |||||||||||||||  |||||||| |||||| |||||||| |||||||||||||
Sbjct  80   ACATACAACACTTCTTTTACCCTCTCACGGCCCCATGTCCCGACTT-CACCACTTATAAC  138

Query  175  AAAGCAGACACAATTTATGGATCATATATTATATCATTCAATGACAAATTCTTATAG  231
            |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct  139  AAAGCAGACACAATTTATGGATCATATAATATATCATTCAATGACAAATTATTATAG  195



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 7943158288


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5