BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G11420.1
Length=1513
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487977 jgi|Araly1|487977|fgenesh2_kg.6__1111__AT5G11420.1 2128 0.0
> Ahg487977 jgi|Araly1|487977|fgenesh2_kg.6__1111__AT5G11420.1
Length=1444
Score = 2128 bits (1152), Expect = 0.0
Identities = 1353/1446 (94%), Gaps = 30/1446 (2%)
Strand=Plus/Plus
Query 31 TGCTGGCTCCTCTCCCAATTTCCCATAATTTACTAAATATCACT-T-TCTAGTCTCTTCT 88
|||||||||||||||||||||||||||||||| |||| | | || | |||||||||||||
Sbjct 1 TGCTGGCTCCTCTCCCAATTTCCCATAATTTAGTAAA-A-C-CTGTCTCTAGTCTCTTCT 57
Query 89 CTTTACTTTGGTCGTCCACAATGAAAGGAGGCAGCCTCTCGTTTCTCTTCGTTCTCCTAA 148
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 58 CTTTACTTTGGTCGTTCACAATGAAAGGAGGCAGCCTCTCGTTTCTCCTCGTTCTCCTAA 117
Query 149 TCGCCACCATCACTTCCGTCATTTGCTTCAGTGACGGGATGTTACCAAACGGCGACTTTG 208
|||||||||||||||||||| | |||||||| |||||||||||||| ||||| |||||||
Sbjct 118 TCGCCACCATCACTTCCGTCCTCTGCTTCAGCGACGGGATGTTACCGAACGGTGACTTTG 177
Query 209 AACTAGGACCAAAACCATCGGACATGAAAGGAACGCAAGTAATAAACAAGAAGGCGATTC 268
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 178 AGCTAGGACCAAAACCATCGGACATGAAAGGAACGCAAGTAATAAACAAGAACGCGATTC 237
Query 269 CTAGCTGGGAGCTTTCAGGCTTCGTCGAATACATAAAGTCCGGTCAAAAACAAGGAGACA 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 CTAGCTGGGAGCTTTCAGGCTTCGTCGAATACATAAAGTCCGGTCAAAAACAAGGAGACA 297
Query 329 TGCTTCTCGTAGTCCCGGCCGGAAAGTTCGCAATCCGGCTAGGCAACGAGGCATCGATCA 388
|||||||||| || ||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 298 TGCTTCTCGTCGTACCGGCAGGAAAATTCGCAATCCGGCTAGGCAACGAGGCATCGATCA 357
Query 389 AACAAAGACTTAACGTTACAAAAGGAATGTATTACTCACTGACGTTCAGTGCCGCAAGGA 448
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 358 AACAAAGACTTAACGTTACAAAAGGAATGTATTATTCACTCACGTTCAGTGCCGCAAGGA 417
Query 449 CATGTGCCCAAGACGAACGGCTCAACATATCGGTGGCACCTGACTCAGGCGTTATTCCTA 508
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 418 CATGTGCCCAAGACGAACGGCTCAACATATCGGTGGCACCTGACTCGGGTGTTATTCCTA 477
Query 509 TACAGACGGTGTACAGTAGCAGTGGATGGGACCTTTACGCATGGGCGTTCCAAGCCGAGA 568
|||||||||||||||||||||||||||||||||| ||||| |||||||| || ||| |||
Sbjct 478 TACAGACGGTGTACAGTAGCAGTGGATGGGACCTCTACGCTTGGGCGTTTCAGGCCAAGA 537
Query 569 GTAACGTGGCAGAGATCGTGATTCATAATCCTGGTGAGGAGGAAGATCCTGCTTGTGGAC 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 GTAACGTGGCAGAGATCGTGATTCATAATCCTGGTGAGGAGGAAGATCCTGCTTGTGGAC 597
Query 629 CACTCATTGATGGTGTGGCAATCAAAGCTCTATACCCTCCTCGGCCCACCAATAAGAATA 688
|||| ||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 598 CACTTATTGATGGTGTCGCAATCAAAGCTCTCTACCCTCCTCGACCCACCAATAAGAATA 657
Query 689 TATTGAAGAACGGAGGATTTGAAGAAGGTCCCTACGTACTCCCAAACGCAACAACCGGCG 748
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 658 TATTGAAAAACGGAGGATTTGAAGAAGGTCCCTATGTACTCCCAAACGCAACAACCGGCG 717
Query 749 TTCTGGTTCCTCCCTTTATAGAAGATGACCACTCTCCTTTACCCGCGTGGATGGTCGAAT 808
||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||
Sbjct 718 TTCTGGTTCCTCCCTTTATAGAAGATGACCACTCTCCTTTACCTGCTTGGATGATCGAAT 777
Query 809 CACTCAAAGCCATCAAATACGTTGATGTCGAGCATTTCTCGGTCCCACAAGGCCGTCGAG 868
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 778 CACTCAAAGCCATCAAATACGTTGATGTCGAACATTTCTCGGTCCCACAAGGCCGTCGAG 837
Query 869 CCGTGGAGCTAGTGGCAGGCAAAGAAAGCGCAATCGCTCAGGTAGCTAGGACCGTTGTGG 928
|||||||||| || ||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 838 CCGTGGAGCTGGTCGCAGGCAAAGAAAGCGCAATCGCTCAGGTGGCTCGGACCGTTGTGG 897
Query 929 GAAAAACTTACGTGCTTTCGTTTGCGGTTGGAGATGCTAACAATGCTTGCCAAGGATCGA 988
|||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 898 GAAAGACTTACGTGCTCTCGTTTGCGGTTGGAGATGCTAACAACGCTTGCCAAGGATCGA 957
Query 989 TGGTGGTCGAGGCATTTGCGGGAAAAGACACTCTAAAGGTACCTTATGAGTCTCGAGGCA 1048
|| | || |||||||||||||||||||||||| ||||||||||||||||||| ||||| |
Sbjct 958 TGATAGTTGAGGCATTTGCGGGAAAAGACACTTTAAAGGTACCTTATGAGTCGCGAGGGA 1017
Query 1049 AAGGAGGGTTCAAACGCGCTTCTCTACGGTTTGTGGCGGTTTCGACCCGCACAAGAGTTA 1108
||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1018 AAGGAGGATTCAAACGCGCATCTCTGCGGTTTGTGGCGGTTTCGACCCGCACAAGGGTTA 1077
Query 1109 TGTTTTACAGCACATTTTACTCGATGAGAAGCGATGATTTCTCATCACTGTGTGGGCCCG 1168
||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1078 TGTTTTACAGCACGTTTTACTCGATGAGAAGCGATGATTTCTCGTCGCTGTGTGGGCCCG 1137
Query 1169 TGATCGATGATGTTAAGCTCCTCAGTGCTCGTAAGCCGTAAGATGGCCATTGTTTTATTT 1228
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1138 TGATCGATGATGTTAAGCTCCTCAGTGCTCGTAAGCCGTAAGATGACCATTGTTTTATTT 1197
Query 1229 CT-AAGGTTCTTCGTATAAGCCAGTGTGGTTTTTTATATAAATATGATTTTCTTAATCTC 1287
| || ||| |||||||||||||||||| |||| |||||||||||||||
Sbjct 1198 -TGAAAGTTGTTCGTATAAGCCAGTGTG-------ATAT------GATTTTCTTAATCTC 1243
Query 1288 TAATGCTTTTGAAATGAGATGAGTAATACTGAAAGGGTGTTTGTGGTGTAGGGTTTTATA 1347
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1244 TAATGCTTTTGAAATGAGATGAGTAATACTGAAAGGGTGTT-GTGGTGTAGGGTTTTATA 1302
Query 1348 TAAGGCAAAAAGGTCTTGCTTATATATATTTTCTTGTATGAGAAGGCTAAAGAAATGTTG 1407
||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 1303 TAAGGCAGAAAGGTCTTGCTTATATCTATTTTCTTGTATGAGAAGGCTGAAGAAATGTTG 1362
Query 1408 TCTGTTTTTACTA-A-AT-T-GGGTTCTT-T-C-AAGGAGA-TCGGGTGATTGTGAGAAT 1459
||| ||||||||| | || | |||||||| | | || |||| | |||||||| ||||||
Sbjct 1363 TCTTTTTTTACTATATATATTGGGTTCTTCTTCTAAAGAGACT-GGGTGATTACGAGAAT 1421
Query 1460 AAAAAT 1465
||||||
Sbjct 1422 AAAAAT 1427
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56640194315
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5