BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G11430.1
Length=2882
Score E
Sequences producing significant alignments: (Bits) Value
Ahg350338 jgi|Araly1|350338|fgenesh1_pg.C_scaffold_6000931 3007 0.0
Ahg489410 jgi|Araly1|489410|fgenesh2_kg.6__2544__AT5G25520.2 525 7e-148
> Ahg350338 jgi|Araly1|350338|fgenesh1_pg.C_scaffold_6000931
Length=2460
Score = 3007 bits (1628), Expect = 0.0
Identities = 1824/1916 (95%), Gaps = 24/1916 (1%)
Strand=Plus/Plus
Query 840 ATCTTGGCGAAACGAAGGATTATGGAACCGGTGGTGAAAAGTCATTTCAGGATCCAAAAC 899
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 548 ATCTTGGCGAGACGAAGGATTATGGAACCGGTGGTGAAAAGTCATATCAGGATCCAAAAC 607
Query 900 TTTTGGCATCTAAAATTGAAATGGAACTGTATAAGCTATTTGGTGGTGTGAACAAAAAGT 959
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 608 TTTTGGCATCTAAAATTGAAATGGAACTGTATAAGCTATTTGGAGGTGTGAACAAAAAGT 667
Query 960 ACAGAGAGAGGGGAAGGTCCCTCTTATTCAACTTGAAGGATAAGAACAATCCTGAGCTAA 1019
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 668 ACAGAGAGAGGGGAAGGTCCCTCTTATTCAATTTGAAGGATAAGAACAATCCTGATCTAA 727
Query 1020 GAGAAAGAGTTATGTCGGAAGAAATTTCTGCTGAGAGGTTGTGTTCTATGACAGCCGAAG 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 728 GAGAAAGAGTTATGTCGGAAGAAATTTCTGCTGAGAGGTTGTGTTCTATGACAGCCGAAG 787
Query 1080 AATTGGCTTCTAAGGAGCTTTCTCAGTGGCGTCAAGCCAAAGCTGAAGAGATGGCAAAGA 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 788 AATTGGCTTCTAAGGAGCTTTCTCAGTGGCGTCAAGCCAAAGCTGAAGAGATGGCAAAGA 847
Query 1140 TGGTTGTCCTGCAGGATACAGATATTGATGTCAGAAGTCTGGTGAGGAAAACACACAAGG 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 848 TGGTTGTCCTGCAGGATACAGATATTGATGTCAGAAGTCTGGTGAGGAAAACACATAAGG 907
Query 1200 GTGAATTCCAGGTTGAAATTGAACCAGTTGACAGGGGCACAGTAGATGTCTCTGGTGGCA 1259
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 908 GTGAATTCCAGGTTGAGATTGAACCAGTTGACAGGGGCACGGTAGATGTCTCTGGTGGCA 967
Query 1260 TCATGTCACGTAGCAAACGTCGACCCAGAGCCAAATCTCATTCTGTCAAAACCGCTCTCA 1319
||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||
Sbjct 968 TCATGTCACGTAGCAAACGCCGACCCAAAGCCAAATCTCATTCTGTCAAAACCACTCTCA 1027
Query 1320 AAGATGAGGCAGCAAAAGCTGACAATGAGAAATCACGCTCAACTCCTCCCTCAACTGAAG 1379
|||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||
Sbjct 1028 AAGATGAGGCAGCAAAAGCTGATAGTGAAAAATCACGCTCAACTCCTCCCTCAACTGAAG 1087
Query 1380 AGATAGATCCCATGCAAGGTTTGGGGATCGATGATGAATTGAAGGACGTGGAGTTTCTTC 1439
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1088 AGATCGATCCCATGCAAGGTTTGGGGATCGATGATGAATTGAAGGACGTGGGGTTTCTTC 1147
Query 1440 CTCCAATTGTATCACTTGATGAATTCATGGAATCCCTAGACTCTGAGCCTCCATTTGAAA 1499
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1148 CTCCAATTGTATCACTTGATGAATTCATGGAATCTCTAGACTCTGAGCCTCCATTTGAAA 1207
Query 1500 GTCCGCATGGTAATTCTGAAATGCAGGTGTCTCCGTCTGAGAAAAGTGATTCCGAAGCTG 1559
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1208 GTCCGCATGGTAATTCTGAAATGCAGGTGTCTCCGTCTGAGAAAAGTGATTCTGAAGCTG 1267
Query 1560 GGTCAGACTCAAAATCTCCTAAAGGATCTCCTAAGGAACTAAGTGATAAAAGTTTGCCTG 1619
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1268 GGTCAGACTCAAAATCTCCTAAAGGATCTCCTAAGGAACCAAGTGATAAAAGTTTGCCTG 1327
Query 1620 AAGCAAAACCAGAAAAGATTGATGAAGTAACCCCTGA-GTTTGATGCCAATGTCAAAGTT 1678
|| ||||||||||||||||||||||||| |||| || | |||||||||| |||||||||
Sbjct 1328 AACCAAAACCAGAAAAGATTGATGAAGTGTCCCC-GAAGGTTGATGCCAACGTCAAAGTT 1386
Query 1679 GATGACGATATCTCTAGAGTTGAGAAAGCAGCTGCACTTAGTGATGATAAGGGAGAAAGA 1738
||||||||| || ||||| |||||||| || |||||||||||||||||||||||||||||
Sbjct 1387 GATGACGATGTCGCTAGACTTGAGAAAACATCTGCACTTAGTGATGATAAGGGAGAAAGA 1446
Query 1739 GCATGGGATGGAATACTGCAACTGAGTATGTCTTCCGTAGTCCCTGTCGCTGGCATTTTC 1798
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1447 GCATGGGATGGAATACTGCAACTGAGTATGTCTTCCGTAGTCCCTGTCACTGGCATTTTC 1506
Query 1799 AAAAGTGGTGAGAAAGCAGAAACTAGCGAGTGGCCGGCGATGGTGGAAGTTAAGGGTAGA 1858
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1507 AAAAGTGGTGAGAAAGCAGAGACGAGCGAGTGGCCGGCGATGGTGGAAGTTAAGGGTAGA 1566
Query 1859 GTTAGGCTGAGTGGGTTTGGGAAATTTATTCAAGAGCTTCCCAAGTCTCGAACCCGTGCC 1918
|||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1567 GTTAGGCTAAGTGGGTTTGGGAAGTTTATTCAAGAGCTTCCTAAGTCTCGAACCCGTGCC 1626
Query 1919 CTAATGGTAATGTACTTGGCTTATAAAGACGGCATTTCTGAGAGCCAGCGTGGAAGCCTT 1978
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1627 CTAATGGTAATGTACTTGGCTTGTAAAGACGGCATTTCTGAGAGCCAGCGTGGAAGCCTT 1686
Query 1979 ATTGAGGTTATTGATTCCTACGTTGCTGATCAGAGAGTTGGCTACGCAGAGCCAGCTTCA 2038
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1687 ATTGAGGTTATTGATTCCTACGTTGCTGATCAGAGAGTTGGCTACGCAGAGCCAGCCTCA 1746
Query 2039 GGAGTGGAGCTTTACCTTTGCCCAACACGTGGGGAGACTCTAGATTTGCTAAACAAAGTC 2098
|||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||
Sbjct 1747 GGAGTGGAGCTTTACCTTTGCCCAACACGTGGCGAGACTCTGGATTTGCTAAGCAAAGTC 1806
Query 2099 ATCTCTCAAGAACAGCTCGATGAGGTCAAGTCTTTGGATATTGGATTGGTTGGAGTTGTT 2158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1807 ATCTCTCAAGAACAGCTCGATGAGGTCAAGTCTTTGGATATTGGATTGGTTGGAGTTGTT 1866
Query 2159 GTGTGGAGACGAGCCGTCGTTCCCAAGCCCGGTTCCGGTTCAAAACGTCAGCATTCTTTT 2218
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1867 GTGTGGAGACGAGCCGTCGTTCCCAAGCCCGGTTCCGGTTCAAGACGTCAGCATTCTTCT 1926
Query 2219 TCTTCTTCTATTGGTTCTAAAACCTCTGTTTTGCCTGTAAACAAGAAGCAGAGAGTGCAT 2278
||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1927 TCTTCTTTTCTTGGTTCTAAAACCTCTGTTTTGCCTGTAAACAAGAAGCAGAGAATGCAT 1986
Query 2279 GT-TACAGAGAAACCTCTTGTTGTTGCATCAATGAGAAATCACCATCATGGTTATG---- 2333
|| | | ||||||||||||||||||||||| || || |||| ||||||||||||
Sbjct 1987 GTCTCC-GAGAAACCTCTTGTTGTTGCATCTATAAGGAATCGTAATCATGGTTATGGAGG 2045
Query 2334 TGAA------A--CATGATACTGCTGCTGATGATGATG-TG-----CCGCCTGGATTTGG 2379
|||| | |||||| |||||| ||||||||||| || ||||||||||||||
Sbjct 2046 TGAAGGTGTGAAACATGATGCTGCTGGTGATGATGATGATGATGTGCCGCCTGGATTTGG 2105
Query 2380 TCCTGTGGCTTCAAGAGACGAAGATGATTTACCGGAATTTAACTTTAATTCCTCGGTTGT 2439
|||||| ||||| ||||| || ||||||||||||||||||||||| | |||||| |||||
Sbjct 2106 TCCTGTAGCTTCGAGAGATGATGATGATTTACCGGAATTTAACTTCAGTTCCTCCGTTGT 2165
Query 2440 GCCAGTTTCTTCTCCTCAGCCATTACCAGCTCAATCTAAGTCTTTGGATCAAGTAAGAAA 2499
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2166 GCCAGTTTCTTCTCCCCAGCCATTACCAGCTCAATCTAAGTCTTTGGATCAAGTAAGAAA 2225
Query 2500 GCTCATACACAAGTATGGAAAATCTGCAAGCA-CTTATGATGATGATGACGATGAGGACG 2558
|||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||
Sbjct 2226 GCTCATACACAAGTATGGAAAATCTGCAAGCATCT-ATGATGATGATGACGATGAAGACG 2284
Query 2559 ACATACCTGAATGGCAGCCACACGTCCCTAGCCACCAGCTTCCACCACCGCCGCCTCCAC 2618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2285 ACATACCTGAATGGCAGCCACACGTCCCTAGCCACCAGCTTCCACCACCGCCGCCTCCAC 2344
Query 2619 CTCTCGGCTTCAGACCCGAGGTATTTAGACCGCCTCAAGATGGTTGGTATGATAATCAAA 2678
||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 2345 CTCCCGGCTTCAGACCCGAGGTGTTTAGACCGCCTCAAGATGGTTGGTGGGATAATCAAA 2404
Query 2679 ACGGAGGATCAGGGCAACACTATGAGCGGAACCAGTCAAGAAACAGAGGATTTTAA 2734
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2405 ATGGAGGATCAGGGCAACACTATGAGCGGAACCAGTCAAGAAACAGAGGATTTTAA 2460
Score = 734 bits (397), Expect = 0.0
Identities = 504/555 (91%), Gaps = 10/555 (2%)
Strand=Plus/Plus
Query 119 ATGGCCGAGATAAATGGGTCCATGCAGCTAGTAGGAAAGCACAAGTCACTACCTCAGACC 178
||||| ||||||||||||||||||||||||| |||||||| ||||||||| || |||||
Sbjct 1 ATGGCTGAGATAAATGGGTCCATGCAGCTAGCAGGAAAGCGCAAGTCACTGCCGGAGACC 60
Query 179 ACTCTCGGTGGTGGTTCTGCATCCGAGGCACCAAACAAGCAGGT-TAGACCATGGTTACA 237
|||||| |||||||||||||| ||||||||||||||||| | |||||||||||||||
Sbjct 61 ACTCTC---GGTGGTTCTGCATCTGAGGCACCAAACAAGCA-CTATAGACCATGGTTACA 116
Query 238 GCAGTTGTCTCCAGCAAGCAATGGGATTCTGCATATTCCTACTAAAATACTTTCTCAAGA 297
||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
Sbjct 117 GCAATTGTCTCCAGCAAGCAATGGGATTCTGCATATTCCTACTAATATGCTTTCTCAAAA 176
Query 298 GACACTACATTCTCTGATGCATGGCAAGAAAG-CGACGCAAACAGAATCCGCTCCCCAGA 356
|||||||||||| |||||||||||||||| || | ||||||||||||||| ||| |||||
Sbjct 177 GACACTACATTCACTGATGCATGGCAAGAGAGTC-ACGCAAACAGAATCCCCTCTCCAGA 235
Query 357 AACCGGCAAAGCCGGTTGTAAACAAGAAGCAGCATGTCCCTCCTCCACAAAGGTCAGTGA 416
|| | | |||||| ||||||| |||||| ||||| | | || || |||||||||||||
Sbjct 236 AATCTGTAAAGCCTGTTGTAAGCAAGAAACAGCAAAT--C-CCACCGCAAAGGTCAGTGA 292
Query 417 AAGCGATGGAGGAAGTAAATGAGTCGGTGAGGTCTAAAATGAGGGAGTCATTAGCATCCG 476
|||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 293 AAGCCATGGATGAAGTAAATGAGTCTGTGAGGTCTAAAATGAGGGAGTCATTAGCATCTG 352
Query 477 CGTTGGCCTTGGTTAAGAAAGATGACGATTCTCCCAAAGGGAAAGAGAATATAGGGACTG 536
|||||||||||||| ||||||||||||| ||||| || ||||||||||||||||||||||
Sbjct 353 CGTTGGCCTTGGTTCAGAAAGATGACGAATCTCCTAAGGGGAAAGAGAATATAGGGACTG 412
Query 537 TAGAAACTCCTGTGATTACTCAGGAGAATACTCAAAGTTTTCAGCCTGCCTCACCTGCTA 596
| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 413 TGGAAACTCCTGTGATTACTCAGGAGAATACTCAAAGTTTTCAGCCTGTCTCACCTGCTA 472
Query 597 GCATCAGTGTCCCTGTAGGCGAAGGGACCATGTCAGAAATGCCCACCAGTGTTGAAAGTT 656
|||||| ||||||| |||| ||||||| ||||||||||||||||||| ||||||||||||
Sbjct 473 GCATCACTGTCCCTATAGGTGAAGGGATCATGTCAGAAATGCCCACCGGTGTTGAAAGTT 532
Query 657 CTGTGCAGAAGGACA 671
|||||||||||||||
Sbjct 533 CTGTGCAGAAGGACA 547
> Ahg489410 jgi|Araly1|489410|fgenesh2_kg.6__2544__AT5G25520.2
Length=3370
Score = 525 bits (284), Expect = 7e-148
Identities = 730/934 (78%), Gaps = 75/934 (8%)
Strand=Plus/Plus
Query 702 ATGTT-ATCAAATTTAATGTACTTAAGTCCCAATATGACGAGGTTTT-CCCTCGGGATAA 759
||||| ||| ||| | |||||| || | |||| |||||||||||| |||| | ||| |
Sbjct 1023 ATGTTAATC-AATCTGATGTACAGAAAACTCAATTTGACGAGGTTTTCCCCT-GTGATGA 1080
Query 760 TGTTCCTTTTACTGATATTATTTTTCCAAACGATGATCTTTTACATGGTAATGAACTCTC 819
||||| ||||| ||||| ||||||| | ||||| |||||||| ||||||| |||||
Sbjct 1081 TGTTCGTTTTAGTGATAGTATTTTTTCTGGGGATGAACTTTTACAGGGTAATGGCCTCTC 1140
Query 820 ATGGGATCTGGAA---GTTTCAGATCTTGGCGAAACGAAGGATTATGGAACCGGTGGTGA 876
||||| | ||||| ||||||||| |||| | | | || || ||||| | |
Sbjct 1141 ATGGGTTTTGGAACCTGTTTCAGATTTTGG-G----G-A-GA--AT-GAACC-----TCA 1185
Query 877 AAAGTCATTTCAGGATCCAAAACTTTTGGCATCTAAAATTGAAATGGAACTGTATAAGCT 936
|||||| ||| |||||||| | || ||||||||||||||||| ||||||| | ||||||
Sbjct 1186 AAAGTCGTTTGAGGATCCAGAGCTCTTGGCATCTAAAATTGAGTTGGAACTTTTTAAGCT 1245
Query 937 ATTTGGTGGTGTGAACAAAAAGTACAGAGAGAGGGGAAGGTCCCTCTTATTCAACTTGAA 996
|||||| ||||||||||| ||||||| ||||| ||||||||| ||||||||||| |||||
Sbjct 1246 ATTTGGAGGTGTGAACAAGAAGTACAAAGAGAAGGGAAGGTCTCTCTTATTCAATTTGAA 1305
Query 997 GGATAAGAACAATCCTGAGCTAAGAGAAAGAGTTATGTC-GGAAGAAATTTCTGCTGAGA 1055
|||||||||||||||||||||||||||||| || ||||| |||| | || ||| | ||||
Sbjct 1306 GGATAAGAACAATCCTGAGCTAAGAGAAAGTGTCATGTCCGGAA-AGATATCTCCAGAGA 1364
Query 1056 GGTTGTGTTCTATGACAGCCGAAGAA-TTGGCTTCTAAGGAGCTTTCTCAGTGGCGTCAA 1114
| |||||| ||||||||| || ||| ||| ||||||||||||||||||||||||| |||
Sbjct 1365 GATTGTGTAATATGACAGCTGAGGAACTTG-CTTCTAAGGAGCTTTCTCAGTGGCGACAA 1423
Query 1115 GCCAAAGCTGAAGAGATGGCAAAGATGGTTGTCCTGCAGGATACAGATATTGATGTCAGA 1174
|| ||||| ||||||||||| ||||||||||||||| |||| |||| ||||||||||||
Sbjct 1424 GCAAAAGCAGAAGAGATGGCGGAGATGGTTGTCCTGCGGGATGCAGACATTGATGTCAGA 1483
Query 1175 AGTCTGGTGAGGAAAACACACAAGGGTGAATTCCAGGTTGAAATTGAACCAGTTGACAG- 1233
| ||||||||||||||| || || ||||| |||||||| |||||||| || ||||| ||
Sbjct 1484 AATCTGGTGAGGAAAACGCATAAAGGTGAGTTCCAGGTAGAAATTGATCCTGTTGATAGT 1543
Query 1234 GGGCACAGTAGATGTCTCTGGTG-GCATCATGTCACGTAGCAAACGTCGACCCAGAGCCA 1292
||| ||||| ||||| |||| || | || | |||| ||| |||| |||| ||| ||| |
Sbjct 1544 GGG-ACAGTGGATGTGTCTGCTGAG-ATTACCTCACATAGTAAACCTCGAGCCAAAGCAA 1601
Query 1293 AATCT-CAT--TC-TGT-CAAAA-CCGCTCTCAAAGATGA--GGCA-GCA--A-AAG--C 1338
|||| || || | | | ||| || || | ||||| | ||| | | | ||| |
Sbjct 1602 AATCCGCAAAATCATCTACCAAATCCACTTT-AAAGAAAAATGGCTCGAATGATAAGAAC 1660
Query 1339 -TGA--C--AATGAG--AA-ATCA-C-GCTCA--ACTCCT-CCCTCAACTGAAGAGATAG 1385
| | | || || || |||| | ||| | |||| | ||| |||| || ||||| |
Sbjct 1661 ATAAAACTCAACCAGGGAACATCATCTGCT-ATGACTC-TGCCCCCAACAGAGGAGATTG 1718
Query 1386 ATCCCATGCAAGGTTTGGGGATCGATGATGA-ATTGAAGGACGTGGAGTTT-CTTCCTCC 1443
|||| ||||| ||| || || |||||||| || |||||| |||| |||| ||||||||
Sbjct 1719 ATCCAATGCATGGTCTGTCAATGGATGATGAGAT-GAAGGATGTGG-GTTTTCTTCCTCC 1776
Query 1444 AATTGTATCACTTGATGAATTCATGGAATCCCTAGA-CTCTGAGCCTCCATTTGAAAGTC 1502
||||||||| |||||||| |||||||||||||| || ||| || |||||||||| ||||
Sbjct 1777 AATTGTATCGCTTGATGAGTTCATGGAATCCCT-GAACTCAGAACCTCCATTTGGCAGTC 1835
Query 1503 CGCATG-GTAAT--TC-TG-AAATGCAGGTGTCTCCGTCTGAGAAAAGTGATTCCGAAGC 1557
| |||| | | | || || ||| | || | || | |||||||| ||||| || |||
Sbjct 1836 CACATGAGCA-TCCTCCTGTAAAGGAAGA-GCCTGCATCTGAGAAGAGTGACTCTAAAGA 1893
Query 1558 TGGGTCAGACTCAAAATCTCCTA-AAGGATCTCC 1590
||||||| | |||||||| ||| ||| ||||||
Sbjct 1894 TGGGTCACATTCAAAATCACCTTCAAG-ATCTCC 1926
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108785739720
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5