BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G11440.1
Length=901
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487980 jgi|Araly1|487980|fgenesh2_kg.6__1114__AT5G11440.1 941 0.0
> Ahg487980 jgi|Araly1|487980|fgenesh2_kg.6__1114__AT5G11440.1
Length=818
Score = 941 bits (509), Expect = 0.0
Identities = 627/678 (92%), Gaps = 32/678 (5%)
Strand=Plus/Plus
Query 205 GTTGAAGTGTCAATGCCGAAGAAATCCTCTGAAATGGCTTATAAGCAGATCAGGGATGAT 264
||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 148 GTTCAAGTGTCAATGCCGAAGAAATCCTCTGAAATGGCTTACAAGCAGATCAGGGATGAT 207
Query 265 GATTTGGATTTGGAGATGGATATAGACATGGATATTGAATACCTTCTTGTCACTTTCTCT 324
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 208 GATTTGGATTTGGAGATGGATATTGACATGGATATTGAATACCTTCTTGTGACTTTCTCT 267
Query 325 GGTCTCTCACAAGAGTCTATCACTGATGTTTACCTCGCTAATGGCGGTGATCTTGAAGCA 384
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 268 GGTCTCTCACAAGAGTCTATTACTGATGTTTACCTCGCGAATGGCGGTGATCTTGAAGCA 327
Query 385 ACCATTGAGATGCTGAATCAGCTTGAGATATACAGCACTGAATCTGAAGAAAACCTGCCA 444
||||||||||||||||||||||||||||||||||| |||||||| || ||||| ||||||
Sbjct 328 ACCATTGAGATGCTGAATCAGCTTGAGATATACAGTACTGAATCGGAGGAAAATCTGCCA 387
Query 445 GAGACACTTGATATTGGGGATATCTCTGAGTCAGGGCCTTCAACATCAAAATCTACTGAA 504
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 388 GAGACACTTGATATTGGGGATATCTCTGAGTCAGGGCCTTCAACCTCAAAAGCTACTGAA 447
Query 505 GTCGCTGCATCCACATCATCGGTTATCCCTAATGCACCTGTATCGGCCTGATCTCATGAA 564
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 448 GTCGCTGCATCCACATCATCGGTTATCCCTAATGCACCTGTATCGGCCTGAT-TCATGAA 506
Query 565 TCCTTTAGTTGTGAAG-ttttgcttcttc------ttctttttcttttgttttggtttgC 617
||| |||||||||||| |||||||||||| || ||||| |||||| |||||||||
Sbjct 507 TCC-TTAGTTGTGAAGTTTTTGCTTCTTCTTTTTTTTTTTTTTTTTTTGTATTGGTTTGC 565
Query 618 ATACCCATAATAAGTACAGTAATGGGGG-TA---T-T-GTATCAATGAAGTTGATGGTAT 671
|||||| |||||||||||| |||||||| || | | ||||||||||||||||||||||
Sbjct 566 ATACCCTTAATAAGTACAGCAATGGGGGTTAGGGTATGGTATCAATGAAGTTGATGGTAT 625
Query 672 CTAAGAGAAATGATGATATGTGAGTAGTTGGAAAATGTATAGTTTTGGAAGTTCAAATCT 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 626 CTAAGAGAAATGATGATATGTGAGTAGTTGGAAAATGTATAGTTTTGGAAGTTCAAATCT 685
Query 732 GAGTGGTGTGTTGTT-T-GGGCAGATTAGATTAGT--CTGGTCttttttgaccccttttt 787
||||||||||||||| | ||||||||||||||||| |||||||||| |||||||||||
Sbjct 686 GAGTGGTGTGTTGTTGTTGGGCAGATTAGATTAGTGTCTGGTCTTTT--GACCCCTTTTT 743
Query 788 ttattttGCAGCTCCATCTGTGGATTGGATTTTCCTATGAATAATA-TGATA--T--T-- 840
| || |||||||||||||||||||||||||||||| |||||||| ||||| | |
Sbjct 744 GT-TT--GCAGCTCCATCTGTGGATTGGATTTTCCTAAGAATAATACTGATAAATGATAA 800
Query 841 -GATATGTTTATTATGGT 857
|||||||||||||||||
Sbjct 801 TGATATGTTTATTATGGT 818
Score = 180 bits (97), Expect = 2e-44
Identities = 113/120 (94%), Gaps = 3/120 (3%)
Strand=Plus/Plus
Query 88 ATGAAGCCAGGAGCATTTGCATTGAATCCACATGCAGCATCGTATGTACCAATCTCCAAA 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAAGCCAGGAGCATTTGCATTGAATCCACATGCAGCATCGTATGTACCAATCTCCAAA 60
Query 148 AGAGTGGATTATGGTGGCGGTG---ATGATGGTTTGGTGTTTGCAGCAAAGTCCCCCACG 204
||| |||||| |||||| |||| ||||||||||| |||||||||||||||||||||||
Sbjct 61 AGAATGGATTGTGGTGGTGGTGGTGATGATGGTTTGATGTTTGCAGCAAAGTCCCCCACG 120
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33395675292
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5