BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G11450.1
Length=1140
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487981 jgi|Araly1|487981|fgenesh2_kg.6__1115__AT5G11450.1 1637 0.0
> Ahg487981 jgi|Araly1|487981|fgenesh2_kg.6__1115__AT5G11450.1
Length=1068
Score = 1637 bits (886), Expect = 0.0
Identities = 1013/1074 (94%), Gaps = 9/1074 (1%)
Strand=Plus/Plus
Query 34 GAACACGCCATAGCTATGGCTCTTCTCTGTCCTTCTCTTCCCTCTCCGAATTCTCGTCTT 93
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 GAACACGCCATAGCTATGGCTCTTCTCTGTCCTTCTCTTCCCTCTCCCAATTCTCGTCTT 60
Query 94 TTCAGGTGCAGGAGCAGCAATATTTCGAGCAAGTATCATGGAGCCTCAAAGGAGCTGATG 153
|||||||||||||||||||| |||||||| ||||||||||||| |||||||||||| ||
Sbjct 61 TTCAGGTGCAGGAGCAGCAACATTTCGAGTAAGTATCATGGAGAATCAAAGGAGCTGTTG 120
Query 154 ATTGCTCGTTCTGGTGTGTCTACGAGATCAATTTCTTCGGAAAAGGGGCTTTCTCGTAGG 213
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 121 ATTGCTCGTTCTGGTGTGTCTACGAGATCAATTTCTTCGGAAAAGGGGCTCTCTCGTAGG 180
Query 214 GATTTAGTGCTCATTGGTCTCTCTTCTCCGTTGTCTATGTTCTTGCCATTGTCTTCTCCA 273
||||| ||||| ||||||||||||||||| ||||||||| |||||||| |||| |||||
Sbjct 181 GATTTGGTGCTAATTGGTCTCTCTTCTCCTTTGTCTATGCTCTTGCCACTGTCGTCTCCT 240
Query 274 GTCACTCATGCAGAAGAAGACGTGAAAATGAGTGGAGAAGAATTGAAAATGGGTACAATG 333
||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||
Sbjct 241 GTCACTCATGCAGAAGAAGACCTGAAAATGGGTACAGAAGAATTGAAAATGGGTACAATG 300
Query 334 GTGGATGATATTAATGCTTATTCTTATGCTTACCCATTGGATTATCCATCTGAGAAGCTT 393
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 301 GTGGATGATATTAATGCTTACTCTTATGCTTACCCATTGGATTATCCATCTGAGAAGCTT 360
Query 394 GTCTTCAAATGGGTTGAATCAAGAAAGCCTGAAAGATACTCTTCAGCTGCACCACTCTCT 453
|||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 361 GTCTTCAAATGGGTCGAATCAAGAAAGCCCGAACGATACTCTTCAGCTGCACCACTCTCT 420
Query 454 CCTGATGCACGTTTACGGATTGTTTCTGAACGAGTTGACCT-AACTGACAACCTCGTCAT 512
||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||
Sbjct 421 CCTGATGCACGTTTACGGATTGTTTCTGAACGAGTTGACCTCATC-GACAACCTCGTCAT 479
Query 513 TTCTATTTCGATAGGTCCCCCAAACTCAAGATTAACATCAAAAGAAAAGAAAACATGGTC 572
|||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 480 TTCTGTTTCGATAGGTCCCCCAAACTCGAGATTAACATCAAAAGAAAAGAAAACATGGGC 539
Query 573 CGCTAAAGAAGTTGCTGATTCTGTTTTGTCTGATAAATCAGCATTGCGTGTCACCTCAAG 632
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CGCTAAAGAAGTTGCTGACTCTGTTTTGTCTGATAAATCAGCATTGCGTGTCACCTCAAG 599
Query 633 TCAGCGTCTTGAAGAGAGTTCGGTTCTTGATGCTCATGCTAGTGATATTGATGGGGAGCC 692
||||||||| |||||||| |||||||| ||||| ||||||| ||||||||||||||||||
Sbjct 600 TCAGCGTCTCGAAGAGAGCTCGGTTCTCGATGCACATGCTACTGATATTGATGGGGAGCC 659
Query 693 TTACTGGTACTACGAGTACCTTGTCCGCAAATCACCAACCAAAATTGCTGAAGCATCAAA 752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TTACTGGTACTACGAGTACCTTGTCCGCAAATCACCAACCAAAATTGCTGAAGCATCAAA 719
Query 753 GCTTTACAGACACTATATTTCTTCAACAGCTGAACGTGATGGATACTTATACACCATAAA 812
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 720 GCTTTACAGACACTATATTTCTTCAACAGCTGAACGTGATGGGTACTTATACACCATAAA 779
Query 813 TGCTTCAACCCTTGGCAAGCAGTGGGACAAGATGGGACCGGTGTTAGAAAGAGCAGTAGG 872
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 780 CGCTTCAACTCTTGGCAAGCAATGGGACAAGATGGGACCGGTGTTAGAAAGAGCAGTAGG 839
Query 873 ATCCTTTAGGCTTCTTCCTCCTACTGATAGTTATGTTCCTCCATACAAGGATCCATGGAG 932
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 ATCCTTTAGGCTTCTTCCTCCTACTGATAGTTATGTTCCTCCATACAAGGATCCATGGAG 899
Query 933 GTTTTGGTGATGCTTCCATCTGCCTCATG-AAATTTCTTTTTTC-GAAATTGTCGTTAAT 990
||||||||||||||| ||||| ||||| | |||| |||||||| |||||||| ||||||
Sbjct 900 GTTTTGGTGATGCTTTCATCTACCTCA-GCAAATA-CTTTTTTCCGAAATTGTTGTTAAT 957
Query 991 TTTGATAGGAGAGGAGGTTATGAAAGTTGTAGTGTGAGAAATGAGCCAAGCGAAGTGATT 1050
|||||||||||||| |||||||| ||||||||||||||||||| ||||||||| | |
Sbjct 958 TTTGATAGGAGAGG---TTATGAAAAATGTAGTGTGAGAAATGAGCGAAGCGAAGTAAGT 1014
Query 1051 TTTCCAAATCCGAATATCTTGTTCACTATCAGATGTATTGAGATTGAGATATAA 1104
| |||||||| ||| ||||||||||| | || |||||||||||| |||||||||
Sbjct 1015 TGTCCAAATCTGAAAATCTTGTTCACAACCAAATGTATTGAGATGGAGATATAA 1068
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42507052455
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5