BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G11460.1 Length=1439 Score E Sequences producing significant alignments: (Bits) Value Ahg487982 jgi|Araly1|487982|fgenesh2_kg.6__1116__AT5G11460.1 2017 0.0 > Ahg487982 jgi|Araly1|487982|fgenesh2_kg.6__1116__AT5G11460.1 Length=1429 Score = 2017 bits (1092), Expect = 0.0 Identities = 1346/1460 (92%), Gaps = 52/1460 (4%) Strand=Plus/Plus Query 1 GAGAGAGAGAAGAGTACCTCACAAGACTTGCACAGATATAT--ACGTAAGACTTCTCATT 58 ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| Sbjct 1 GAGAGAGAGAAGAGTACCTCACAAGACTTGCACAGATATATAGACGAAAGACTTCTCATT 60 Query 59 GTCTGctttcttctccttctccttctccttccttcttcttcAACTTTTACCTCAGAAGCA 118 | | | ||||| | | | | ||||| | ||||||||||||||| ||||||||||||| | Sbjct 61 G--T-C-TTCTT-T-C-T-T-CTTCTTC-TCCTTCTTCTTCAAC-TTTACCTCAGAAGGA 109 Query 119 AGAACAAGTCCTGAAG-AA--CCCAGATCATCAATCATGTCTCAGCATTCCAACTATCAA 175 |||||||||||||||| || |||||||||||||||||||||||||||||||||||||| Sbjct 110 AGAACAAGTCCTGAAGAAATTTCCAGATCATCAATCATGTCTCAGCATTCCAACTATCAA 169 Query 176 ATGACCACTGCTTCTGATTACTATTCGACAAAACCGGTCTTGTCAGCGATT-AGAAGCCA 234 ||| |||||||||||||||||||||||||||||||||||||||||| |||| || ||||| Sbjct 170 ATGGCCACTGCTTCTGATTACTATTCGACAAAACCGGTCTTGTCAGGGATTAAG-AGCCA 228 Query 235 CAAACTCATCTCTAGTGTGTTTGAAGGAAAGTGTCCATCTGACTATGAATCAGCTTGGAG 294 |||||||||||||||| ||||||||||||||| ||||||||| | ||||||||||||||| Sbjct 229 CAAACTCATCTCTAGTTTGTTTGAAGGAAAGTCTCCATCTGATTGTGAATCAGCTTGGAG 288 Query 295 CCCAACTTCTCCTTTGGATTTCAGATTGTTCTCCACTTTAGGGAACCC-TTT--TGCTGC 351 ||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||| | Sbjct 289 CCCAACTTCTCCTTTGGATTTCAGATTGTTCTCGACTTTAGGGAACCCTTTTGGTGCTTC 348 Query 352 TTCTTCTTC---GAGGTCAATCTGGAGAGGGAAACAAAGGAGCTGGGATTCTGGTAAAGT 408 ||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||| Sbjct 349 TTCTTCTTCTTTGAGGTCAATCTGGAAAGGGAAACAAAAGAGCTGGGATTCTGGTAAAGT 408 Query 409 AGGCTTGAGCATTGTGCATTCTCTTGTTGATGATCATCACACTGATTCATCAGCAACGAT 468 |||||||||||||| |||||||||||||||| ||||||||||||||||| ||| ||| Sbjct 409 TGGCTTGAGCATTGTTCATTCTCTTGTTGATG---ATCACACTGATTCATCATCAAGGAT 465 Query 469 TGTTTTACCATCACCGGATAGTAAAAACATAATCTTTGGATCTTTGATGAGAAGTGGCCA 528 |||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct 466 TGTTCTACCATCACCGGATAGTAAAAACATAATCTTTGGGTCCTTGATGAGAAGTGGCCA 525 Query 529 GAAACCTCATCTACTCTCTCAACCCTTTACCAAAGCTTTGATGCCCAAGGATGTTATACC 588 ||||||||||||||||||||||||| || ||||||||||||| |||||| ||| |||||| Sbjct 526 GAAACCTCATCTACTCTCTCAACCCCTTGCCAAAGCTTTGATCCCCAAGAATGATATACC 585 Query 589 AAATGCTGTTTTTGAGATTGGACATGATGTGATTGATGTGCTTGAGCTTCGAAAATCTGG 648 |||| ||||||||||||||||| ||||||| |||||||| ||||||| | ||||||||| Sbjct 586 CAATGTTGTTTTTGAGATTGGACCTGATGTGCTTGATGTGGTTGAGCTACAAAAATCTGG 645 Query 649 CTCCGTCGATGCTGCTTACTGTTCCGGTGCTGAGAACTTCAGTGTGAACAACAATGCTTG 708 ||| ||| ||||||||||| |||||||||| ||||||||||||||||||||||||||| Sbjct 646 CTCGGTC---GCTGCTTACTGCTCCGGTGCTGGGAACTTCAGTGTGAACAACAATGCTTG 702 Query 709 TCAGGTGACCAAGCAAGACCCAGGATCACTTAATGGGGGTACTGAAAGTGACATGGAGAT 768 |||||||| |||||||| |||||||||||||||||||||||| | ||||||||| |||| Sbjct 703 TCAGGTGATCAAGCAAGCCCCAGGATCACTTAATGGGGGTACAGGAAGTGACATTGAGAC 762 Query 769 CTCAGAGGACTACACTTGTGTTATTTCACATGGTCCTAACCCCAAAACCACCCATTTTTA 828 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 763 CTCAGAGGACTACACTTGTGTTATTTCACATGGTCCTAACCCCAAAACCACCCATTTTTA 822 Query 829 CGGGGATCAGGTTATGGAGTCCGTAGAGCGCGAGGAGTTGAAGAACCGTTGTTGCAAG-A 887 ||||||||||||| |||||||||||||| | | |||||||||||| |||||||| || | Sbjct 823 CGGGGATCAGGTTCTGGAGTCCGTAGAGAACAATGAGTTGAAGAACAGTTGTTGC-AGTA 881 Query 888 ACGAGAAAGAGAGCATTTTTGCTGTTGCTCCTCTCGACTTGACAACACCTGTTGATGTGT 947 || ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 882 ACAAGAAAAAGAGCATTTTTGCAGTTGCTCCTCTCGACTTGACAACACCTGTTGATGTGT 941 Query 948 TACCTCCCAAAGACTTCTTGAGCTTCTGCTACGGCTGTAGCAAGAAGTTGGGTATGGGAG 1007 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | Sbjct 942 TACCTCCCAAAGACTTCTTGAGCTTCTGCTACGGCTGTAGCAAGAAGTTGGTTATGGG-G 1000 Query 1008 AA-GATATATACATGTACAGTGGATACAAAGCGTTCTGCAGTAGTGAGTGCCGTTCAAAG 1066 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1001 AAAGATATATACATGTACAGTGGATACAAAGCGTTCTGCAGTAGTGAGTGCCGTTCAAAG 1060 Query 1067 GAGATAGATCTGGATGAGGAAATGGAGGATGGAGATGAAGAAGAAGCAATCAAGTCTGTC 1126 |||||||||| ||||||| |||||||||||| | | ||||||| |||||||||||| | Sbjct 1061 GAGATAGATCGGGATGAGAAAATGGAGGATG-A-A-GAAGAAG---CAATCAAGTCTGCC 1114 Query 1127 TCGTCTTCAGACAAGGA---GTCTAAGAAGAAGAGTAACGGTGTGTTCTTCACCGTGGGC 1183 ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1115 TCGTCTTCAGAGAAGGACCTGTCTAAGAAGAAGAGTAACGGTGTGTTCTTCACCGTGGGC 1174 Query 1184 TAATTCCAATACTCCCACCATTTCCATGATCGATTTGAGTCCATGAAAAGAGGAAAAGTA 1243 | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1175 TGATTCCAATGCTCCCACCATTTCCATGATCGATTTGAGTCCATGAAAAGAGGAAAAGTA 1234 Query 1244 GAAGCTTGAGCTGATCATCTGTTCAAGAAAAAAGAGCTGTTGGTTTCTTTAAACTGAGGC 1303 |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| Sbjct 1235 GAAGCTTGAGCTGATCATCTGTTCAAGAAAAA-GAGCTGTTGGTTTCTTTAAACCGAGGC 1293 Query 1304 GGCCATGGATGATCATTTTTGTATATTGCTTGTGCTTCTGCTTACCTAACaaaaaaaaaa 1363 |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1294 GGCCATGGATGATCATTTTTGTATATTGCTTGTGCTTCTGCT-ACCTAACAAAAAAA--- 1349 Query 1364 TACTTTTGGTCTCATCTCTCATGGTTTTGGTGGGTGATTG-GTC---CTATGGCTATTGT 1419 ||||||||||||||||||||||||||| |||||||||||| || |||||||| |||| Sbjct 1350 TACTTTTGGTCTCATCTCTCATGGTTTGGGTGGGTGATTGAGTGGAACTATGGCTCTTGT 1409 Query 1420 TATGGATATTTATAATTATG 1439 |||||||||||||||||||| Sbjct 1410 TATGGATATTTATAATTATG 1429 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53821516185 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5