BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G11460.1
Length=1439
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487982 jgi|Araly1|487982|fgenesh2_kg.6__1116__AT5G11460.1 2017 0.0
> Ahg487982 jgi|Araly1|487982|fgenesh2_kg.6__1116__AT5G11460.1
Length=1429
Score = 2017 bits (1092), Expect = 0.0
Identities = 1346/1460 (92%), Gaps = 52/1460 (4%)
Strand=Plus/Plus
Query 1 GAGAGAGAGAAGAGTACCTCACAAGACTTGCACAGATATAT--ACGTAAGACTTCTCATT 58
||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 1 GAGAGAGAGAAGAGTACCTCACAAGACTTGCACAGATATATAGACGAAAGACTTCTCATT 60
Query 59 GTCTGctttcttctccttctccttctccttccttcttcttcAACTTTTACCTCAGAAGCA 118
| | | ||||| | | | | ||||| | ||||||||||||||| ||||||||||||| |
Sbjct 61 G--T-C-TTCTT-T-C-T-T-CTTCTTC-TCCTTCTTCTTCAAC-TTTACCTCAGAAGGA 109
Query 119 AGAACAAGTCCTGAAG-AA--CCCAGATCATCAATCATGTCTCAGCATTCCAACTATCAA 175
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 110 AGAACAAGTCCTGAAGAAATTTCCAGATCATCAATCATGTCTCAGCATTCCAACTATCAA 169
Query 176 ATGACCACTGCTTCTGATTACTATTCGACAAAACCGGTCTTGTCAGCGATT-AGAAGCCA 234
||| |||||||||||||||||||||||||||||||||||||||||| |||| || |||||
Sbjct 170 ATGGCCACTGCTTCTGATTACTATTCGACAAAACCGGTCTTGTCAGGGATTAAG-AGCCA 228
Query 235 CAAACTCATCTCTAGTGTGTTTGAAGGAAAGTGTCCATCTGACTATGAATCAGCTTGGAG 294
|||||||||||||||| ||||||||||||||| ||||||||| | |||||||||||||||
Sbjct 229 CAAACTCATCTCTAGTTTGTTTGAAGGAAAGTCTCCATCTGATTGTGAATCAGCTTGGAG 288
Query 295 CCCAACTTCTCCTTTGGATTTCAGATTGTTCTCCACTTTAGGGAACCC-TTT--TGCTGC 351
||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||| |
Sbjct 289 CCCAACTTCTCCTTTGGATTTCAGATTGTTCTCGACTTTAGGGAACCCTTTTGGTGCTTC 348
Query 352 TTCTTCTTC---GAGGTCAATCTGGAGAGGGAAACAAAGGAGCTGGGATTCTGGTAAAGT 408
||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 349 TTCTTCTTCTTTGAGGTCAATCTGGAAAGGGAAACAAAAGAGCTGGGATTCTGGTAAAGT 408
Query 409 AGGCTTGAGCATTGTGCATTCTCTTGTTGATGATCATCACACTGATTCATCAGCAACGAT 468
|||||||||||||| |||||||||||||||| ||||||||||||||||| ||| |||
Sbjct 409 TGGCTTGAGCATTGTTCATTCTCTTGTTGATG---ATCACACTGATTCATCATCAAGGAT 465
Query 469 TGTTTTACCATCACCGGATAGTAAAAACATAATCTTTGGATCTTTGATGAGAAGTGGCCA 528
|||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 466 TGTTCTACCATCACCGGATAGTAAAAACATAATCTTTGGGTCCTTGATGAGAAGTGGCCA 525
Query 529 GAAACCTCATCTACTCTCTCAACCCTTTACCAAAGCTTTGATGCCCAAGGATGTTATACC 588
||||||||||||||||||||||||| || ||||||||||||| |||||| ||| ||||||
Sbjct 526 GAAACCTCATCTACTCTCTCAACCCCTTGCCAAAGCTTTGATCCCCAAGAATGATATACC 585
Query 589 AAATGCTGTTTTTGAGATTGGACATGATGTGATTGATGTGCTTGAGCTTCGAAAATCTGG 648
|||| ||||||||||||||||| ||||||| |||||||| ||||||| | |||||||||
Sbjct 586 CAATGTTGTTTTTGAGATTGGACCTGATGTGCTTGATGTGGTTGAGCTACAAAAATCTGG 645
Query 649 CTCCGTCGATGCTGCTTACTGTTCCGGTGCTGAGAACTTCAGTGTGAACAACAATGCTTG 708
||| ||| ||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 646 CTCGGTC---GCTGCTTACTGCTCCGGTGCTGGGAACTTCAGTGTGAACAACAATGCTTG 702
Query 709 TCAGGTGACCAAGCAAGACCCAGGATCACTTAATGGGGGTACTGAAAGTGACATGGAGAT 768
|||||||| |||||||| |||||||||||||||||||||||| | ||||||||| ||||
Sbjct 703 TCAGGTGATCAAGCAAGCCCCAGGATCACTTAATGGGGGTACAGGAAGTGACATTGAGAC 762
Query 769 CTCAGAGGACTACACTTGTGTTATTTCACATGGTCCTAACCCCAAAACCACCCATTTTTA 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 763 CTCAGAGGACTACACTTGTGTTATTTCACATGGTCCTAACCCCAAAACCACCCATTTTTA 822
Query 829 CGGGGATCAGGTTATGGAGTCCGTAGAGCGCGAGGAGTTGAAGAACCGTTGTTGCAAG-A 887
||||||||||||| |||||||||||||| | | |||||||||||| |||||||| || |
Sbjct 823 CGGGGATCAGGTTCTGGAGTCCGTAGAGAACAATGAGTTGAAGAACAGTTGTTGC-AGTA 881
Query 888 ACGAGAAAGAGAGCATTTTTGCTGTTGCTCCTCTCGACTTGACAACACCTGTTGATGTGT 947
|| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 882 ACAAGAAAAAGAGCATTTTTGCAGTTGCTCCTCTCGACTTGACAACACCTGTTGATGTGT 941
Query 948 TACCTCCCAAAGACTTCTTGAGCTTCTGCTACGGCTGTAGCAAGAAGTTGGGTATGGGAG 1007
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 942 TACCTCCCAAAGACTTCTTGAGCTTCTGCTACGGCTGTAGCAAGAAGTTGGTTATGGG-G 1000
Query 1008 AA-GATATATACATGTACAGTGGATACAAAGCGTTCTGCAGTAGTGAGTGCCGTTCAAAG 1066
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1001 AAAGATATATACATGTACAGTGGATACAAAGCGTTCTGCAGTAGTGAGTGCCGTTCAAAG 1060
Query 1067 GAGATAGATCTGGATGAGGAAATGGAGGATGGAGATGAAGAAGAAGCAATCAAGTCTGTC 1126
|||||||||| ||||||| |||||||||||| | | ||||||| |||||||||||| |
Sbjct 1061 GAGATAGATCGGGATGAGAAAATGGAGGATG-A-A-GAAGAAG---CAATCAAGTCTGCC 1114
Query 1127 TCGTCTTCAGACAAGGA---GTCTAAGAAGAAGAGTAACGGTGTGTTCTTCACCGTGGGC 1183
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1115 TCGTCTTCAGAGAAGGACCTGTCTAAGAAGAAGAGTAACGGTGTGTTCTTCACCGTGGGC 1174
Query 1184 TAATTCCAATACTCCCACCATTTCCATGATCGATTTGAGTCCATGAAAAGAGGAAAAGTA 1243
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1175 TGATTCCAATGCTCCCACCATTTCCATGATCGATTTGAGTCCATGAAAAGAGGAAAAGTA 1234
Query 1244 GAAGCTTGAGCTGATCATCTGTTCAAGAAAAAAGAGCTGTTGGTTTCTTTAAACTGAGGC 1303
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 1235 GAAGCTTGAGCTGATCATCTGTTCAAGAAAAA-GAGCTGTTGGTTTCTTTAAACCGAGGC 1293
Query 1304 GGCCATGGATGATCATTTTTGTATATTGCTTGTGCTTCTGCTTACCTAACaaaaaaaaaa 1363
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1294 GGCCATGGATGATCATTTTTGTATATTGCTTGTGCTTCTGCT-ACCTAACAAAAAAA--- 1349
Query 1364 TACTTTTGGTCTCATCTCTCATGGTTTTGGTGGGTGATTG-GTC---CTATGGCTATTGT 1419
||||||||||||||||||||||||||| |||||||||||| || |||||||| ||||
Sbjct 1350 TACTTTTGGTCTCATCTCTCATGGTTTGGGTGGGTGATTGAGTGGAACTATGGCTCTTGT 1409
Query 1420 TATGGATATTTATAATTATG 1439
||||||||||||||||||||
Sbjct 1410 TATGGATATTTATAATTATG 1429
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53821516185
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5