BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G11470.1
Length=2413
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487983 jgi|Araly1|487983|fgenesh2_kg.6__1117__AT5G11470.1 2953 0.0
> Ahg487983 jgi|Araly1|487983|fgenesh2_kg.6__1117__AT5G11470.1
Length=2088
Score = 2953 bits (1599), Expect = 0.0
Identities = 1910/2052 (93%), Gaps = 54/2052 (3%)
Strand=Plus/Plus
Query 100 ATGGAAGAATCTGTAGCATCTGAAGGCTTAGAATTTAAGTGGGGTAAAAAGAAAGGTGTT 159
||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 ATGGAAGAATCAGTAACATCTGAAGGCTTAGAATTTAAGTGGGGTAAAAAGAAATGTGTT 60
Query 160 GGTGGGAAAAAGAAAGATGTCCAGTTCTATGAATCTTTCACCTATGATGGCGATGAATAC 219
||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||
Sbjct 61 GGTGGGAAAAAGAAAGATGTCCAATTCTATGAATCTTTCATCTATGATGGCGATGAGTAC 120
Query 220 CGTCTTTATGACTGTGTCTTAGTTGGCAATGCCAGTGAACCAGACTCTACTGAACCCTTC 279
| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 121 CATCTTTATGACTGTGTCTTAGTTGGCGATGCCAGTGAACCAGACTCTACTGAACCCTTC 180
Query 280 ATTGGCATGATCATAAAAATTTGGGAACACGCTAATAAGCATATCCCAAAGAAAGTCAAG 339
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 181 ATTGGCATGATCATAAAAATTTGGGAACACGCTAATAAGCATATCCCAAGGAAAGTCAAG 240
Query 340 CTTCTCTGGTTCTTTAAACCTTCTGAGATTGCGCCATATCTTGAAGGAGTCCCGA-ATGT 398
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 241 CTTCTCTGGTTCTTTAAACCTTCTGAGATTGCGCCATATCTTGAAGGAGTCCC-AGATGT 299
Query 399 ACTTGCCAATGAAGTGTTTTTAGCATCGGGTGAAGGTCTTGGCCTTGCTAATACCAACCA 458
||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 300 ACTTGCCAATGAACTGTTTTTAGCATCGGGTGAAGGTCTTGGCCTCGCTAATATCAACCA 359
Query 459 ATTGGAAGCAATCGGTGGAAAATGCTCTGTTCTATGCATTTCAAAAGACAAAAGAAATCC 518
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 360 ATTGGAAGCAATCGGGGGAAAATGCTCTGTTCTATGCATTTCAAAGGACAAAAGAAATCC 419
Query 519 ACAACCCTCGGATGAAAAATTCAACTCAGCGGACTTCGTGTTTTGCCGAGCATTTGATGT 578
||||||||||||||||||| |||||||||| |||||||||||| ||||| ||||||||||
Sbjct 420 ACAACCCTCGGATGAAAAAATCAACTCAGCAGACTTCGTGTTTCGCCGATCATTTGATGT 479
Query 579 T-GGAAGTTGCAAAGTTGTGGATACGATTGATGATAAGATTGCTGGAGTTGACGTTAAAT 637
| || |||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 480 TAGG-AGTTGCAAAGTTGTGGATACGATTGATGATAAAATTGCTGGAGTTGATGTTAAAT 538
Query 638 TTATCTTTAACAGAGCGTGCTCTGAGAAAGAAGCAACTGCGGTGCAGAATATTGAAGCAG 697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TTATCTTTAACAGAGCGTGCTCTGAGAAAGAAGCAACTGCGGTGCAGAATATTGAAGCAG 598
Query 698 ACGTAAATGGGAAGTCAGATAGTTTGAAACCAAATGGTCCTTTAGCTAGGGGAGCTAGTG 757
||||||||||||| |||||||||||||||||||||||||| || | ||||||||
Sbjct 599 ACGTAAATGGGAATTCAGATAGTTTGAAACCAAATGGTCC-TT---T-----AGCTAGTG 649
Query 758 GTTCAGTTAGGAAAATCGAAGACAGCGC-TTTTGAATCTTCTGACTGTAAAGAAA-ACAG 815
|||||| ||||||||| ||||||||| | |||||||||||||||||||||| ||| |||
Sbjct 650 GTTCAGGTAGGAAAATTGAAGACAGC-CATTTTGAATCTTCTGACTGTAAA-AAAGGCAG 707
Query 816 TAATGGTTGCAAAGAAGAGAAAGAAAAAGGTCACTACCAACTCGCTATaaaaaaaTCTAC 875
||||||||| | |||||||||||||||||||||| ||||| |||| ||||||| ||||
Sbjct 708 TAATGGTTGTATTCAAGAGAAAGAAAAAGGTCACTATCAACTGGCTACAAAAAAAGCTAC 767
Query 876 ACTTGCAGAAGAAAGGTCTAACAAGGATTCTGGCTCTAGGGGAAATCATTATAATGGCAA 935
| |||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||
Sbjct 768 AGTTGCAGAAGAAAGGTCCAACAAGGATTCTGGCTCTAGGGGAAATCATTTTGATGGCAA 827
Query 936 AGATCAAGAAAGTGAAGTTAAAAAACAGTTAACTAAACAAAAATCTATGCCTGGC-GAAG 994
|| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 828 AGCTCAAGAAAGTGAAGTTAAAAAACAGTTAACTAAACAAAAATCTATGCCT-GCAGAAG 886
Query 995 AAAGATATAGTAACTCTTTTGAAGCTTCTGGCTCCAGGACAATTCATTCCATTTCAAAGA 1054
|||||||||||||||| | |||||||||||||||||||| ||||||||||||||| | ||
Sbjct 887 AAAGATATAGTAACTCGTGTGAAGCTTCTGGCTCCAGGATAATTCATTCCATTTCCAGGA 946
Query 1055 AAGCTCAAGAAAATGATGTTAAAAAGCAGTTGACTAAACAAAAATCTATGCCCGCTGGAG 1114
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 947 AAGCTCAAGTAAATGATGTTAAAAAACAGTTGACTAAACAAAAATCTATGCCCGCTGAAG 1006
Query 1115 AAAGATATAGTCAAGAGTCGAGTGGATTGGATGACAGGCCTCTGAAGAAACAGAAACTTG 1174
|||||||| || |||| | |||| ||||||||||||||||||||||||||||||||| |
Sbjct 1007 AAAGATATGGTAAAGACTTGAGTAGATTGGATGACAGGCCTCTGAAGAAACAGAAACGAG 1066
Query 1175 ATGGTTCTGTTACAGTACGAGATGGATGGGATACAACCATTTTGCAGAACATTACTTCTG 1234
|||||||||||||| ||| ||||||| || |||||||| |||||||||||||||||||||
Sbjct 1067 ATGGTTCTGTTACAATACCAGATGGACGGAATACAACCCTTTTGCAGAACATTACTTCTG 1126
Query 1235 ATGGTAAAAAGGATACAGGATCTTTTAAGAGACCTAGAGACAAAGTGACTATAGAGGAAG 1294
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1127 ATGGTAAAAAGGATACAGGATCTTTCAAGAGACCTAGAGACAAAGTGACTATAGAGGAAG 1186
Query 1295 TCCCTCCCGAAAAGCGCAGCTTTGTTAAGAACCGAGATCTTGTAGTGTCAGTATCTGAAG 1354
|||||||||| |||||||||||||||||||| || ||||| | |||||||||||||||||
Sbjct 1187 TCCCTCCCGAGAAGCGCAGCTTTGTTAAGAAGCGGGATCTGGGAGTGTCAGTATCTGAAG 1246
Query 1355 GAAAAACTACAAAAACTGTAACTGAAAAAGGTATATCCAAGAAGCCCAGCTTTGGACGTG 1414
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||
Sbjct 1247 GAAAAACTACAAAAACTGTAACTGAAAAAGGTTTATCCAAGAAGCCCAGCTTTGGTCATG 1306
Query 1415 CTGAGGACAAGATGTCGGCAGATGATAATGAAAGAAACTATCAAGTAACTGAAGTGTGCC 1474
|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1307 CTGAAGACAAGATGTTGGCAGATGATAATGAAAGAAACTATCAAGTAACTGAAGTGTGCC 1366
Query 1475 GAAGGCCGGATGCT----C-G----TGTTGTAAAATCTTTAGATGCAAGGATGTGGTTTT 1525
|||||||||||||| | | ||||||||||||| |||||||||||||||||||||
Sbjct 1367 GAAGGCCGGATGCTATTTCAGAGCGTGTTGTAAAATCTATAGATGCAAGGATGTGGTTTT 1426
Query 1526 GCAAGAACACAATTCTAAAAGGAGCAGTTTTGTTTTACAGTCCTTCACACTGTATGTTGT 1585
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1427 GCAAGAACACAATTCTAAAAGGAGAAGTTTTGTTTTACAGTCCTTCACACTGTATGTT-- 1484
Query 1586 ATAGTTGTAGTGATGTTCTGTCATTC-TTCTCATCTTATTATGTTACCACAATGCTT--G 1642
|| || | |||| | || | ||| || ||| | | || | | | || || |
Sbjct 1485 AT--TT-T--TGAT-TCCT-T-ATTTATT-TCAGGGAAAAA-GT-A--A-A-TGGTTCCG 1529
Query 1643 GTAA-CATTGAGCCTTGGGAAGAAAGTATGAGGGAAGCAGaaaaaaaaGGGACTGTGGTA 1701
| | | || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1530 G-AGTC-TT---CCTTGGGAAGAAAGTATGAGGGAAGCAGAAAAAAAAGGGACTGTGGTA 1584
Query 1702 CTTCTTCAAAACTTGGATCCTACTTATACATCTGATGAAGTGGAGGATATAGTCTATTCT 1761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1585 CTTCTTCAAAACTTGGATCCTACTTATACATCTGATGAAGTGGAGGATATAGTCTATTCT 1644
Query 1762 GCTTTGAACCAGCAATGCGAAGCGAGGATGATAGAGCGTACATCAGTCACTATTCCTCAT 1821
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1645 GCTTTGAACGAGCAATGCGAAGCGAGGATGATAGAGCGTACATCAGTCACTATTCCTCAT 1704
Query 1822 ATTGGTGAAGCTTTGGTCATTTTCAAAACAAGAGAAGTTGCAGAAAGGGTGATTAGAAGA 1881
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1705 GTTGGTGAAGCTTTGGTCATTTTCAAAACAAGAGAAGTTGCAGAAAGGGTGATTAGAAGA 1764
Query 1882 CTAGATGAGGGATGCTTGTTGCTATCAAGTGGGAGGCCCCTTGTTGCTTCTTTCGCTAAG 1941
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1765 CTAGATGAGGGATGCTTGTTGCTATCAAGTGGGAGGCCCCTTGTTGCTTCTTTCGCTAAG 1824
Query 1942 ATTACTCCACCAGGGAAGCCGTCATTATTCTCAGGCCATATCAAACTACACAAAACTCAA 2001
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1825 ATTACTCCACCAGGGAAGCCGTCATCATTCTCAGGCCATATCAAACTACACAAAACTCAA 1884
Query 2002 ACGCGACGGGAGATGAGAGATGCCGTGGCTACATCACATTCTTCTCAGCCTAACAACCTT 2061
|||||||| |||||||||||||| |||||||||||||||| ||||||||| |||||||||
Sbjct 1885 ACGCGACGAGAGATGAGAGATGCTGTGGCTACATCACATTGTTCTCAGCCGAACAACCTT 1944
Query 2062 GAATTTGACATGGCCATGGAATGGTGTTTGCACCAAGCCAGACACGAGCAGGCGTCTGAA 2121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1945 GAATTTGACATGGCCATGGAATGGTGTTTGCACCAAGCCAGACACGAGCAGGCGTCTGAA 2004
Query 2122 AGTGTATCTAAG 2133
||||| ||||||
Sbjct 2005 AGTGTGTCTAAG 2016
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90921414815
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5