BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G11480.1
Length=1217
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940624 jgi|Araly1|940624|scaffold_601168.1 1607 0.0
> Ahg940624 jgi|Araly1|940624|scaffold_601168.1
Length=999
Score = 1607 bits (870), Expect = 0.0
Identities = 957/999 (96%), Gaps = 6/999 (1%)
Strand=Plus/Plus
Query 85 AGAA-GAGAATCGATCAGATATGATTTTAGCGCATCTTCCAAGATTCCATCTCTCAATCC 143
|||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 4 AGAAGGA-AATCGATCAGATATGATTTTAGCGCAGCTTCCAAGATTCCATCTCTCAATCC 62
Query 144 TCGCGAAACcttctttctctctctcttcttcGCATTTCAGTTTCTTAAACCCTAAGCCTT 203
||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |
Sbjct 63 TCGCGAAACCTTCTTTCGCTCTCTCTTCTTCGCATTTCAATTTCTTAAACCCTAAGCCGT 122
Query 204 CGG-TAACAGTATCTCGAACCCTTTTCTCATTCGCGTCTAAATCGAATCTCGCCACTGTT 262
||| | | |||| ||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 123 CGGTTGA-AGTAGCTCGAACCCTTTTCTCATTCGCGTCTAAATCCAGTCTCGCCACTGTT 181
Query 263 GAACCCATACCATTATCGGTCTCAGATTCAACCGATTTGGATGATGCACCTGTCGAGATT 322
|||||||||||| |||||||||| |||||| |||||||||||||||| ||||||||||||
Sbjct 182 GAACCCATACCACTATCGGTCTCGGATTCATCCGATTTGGATGATGCTCCTGTCGAGATT 241
Query 323 GCGCTCGACAAGCTTTTTATTCCGCCGGAGACCGATATATCCGGTGAAGACTCGGCGAGT 382
|||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||
Sbjct 242 TCGCTCGACAAGCTTTTTATTCCTCCGGAGACTGATATATCCGGTGAAGACTCGACGAGT 301
Query 383 TTAACGACGAGGATACTTAAGGGTTCGAATATTGTGCTGAGCAAGTACGCGAGGGACGCA 442
||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 302 CTAACGGCGAGGATACTGAAGGGTTCGAATATAGTGCTGAGCAAGTACGCGAGGGACGCA 361
Query 443 CAGGTGGTTCAGGCTGATTATGTGAAGAGTAGTGTCAAGACGGAGGATTGTCCGGCCGAT 502
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 362 CAGGTGGTTCAGGCTGATTATGTGAAGAGCAGTGTCAAGACGGAGGATTGTCCGGCCGAT 421
Query 503 GGGTTGCCGGAGTTTGCGCTTGTTGGGAGATCCAATGTTGGGAAATCATCGCTTCTCAAT 562
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 422 GGGTTGCCGGAGTTTGCGCTTGTCGGGAGATCCAATGTTGGGAAATCCTCGCTTCTCAAT 481
Query 563 TCGTTGGTGAGGAGGAAACGCCTTGCCTTGACTTCTAAGAAACCTGGAAAGACGCAATGC 622
|||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||
Sbjct 482 TCGTTGGTGAGGAGGAAACGCCTTGCTTTGACCTCTAAGAAACCTGGAAAAACGCAATGC 541
Query 623 ATTAATCATTTCCGGATCAACGACAAGTGGTACTTGGTAGATTTGCCTGGTTACGGGTAT 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 ATTAATCATTTCCGGATCAACGACAAGTGGTACTTGGTAGATTTGCCTGGTTACGGGTAT 601
Query 683 GCATCAGCACCGCATGAACTCAAA-CAAGACTGGAACAAATTCACCAAAGACTATTTTCT 741
|||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||| ||
Sbjct 602 GCATCAGCACCGCATGAACT-AAAGCAAGACTGGAACAAATTCACCAAGGACTATTTCCT 660
Query 742 AAATCGATCAACATTGGTCTCGGTGTTTTTACTAGTTGATGCCAGCATTCCTGTAAAGCC 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AAATCGATCAACATTGGTCTCGGTGTTTTTACTAGTTGATGCCAGCATTCCTGTAAAGCC 720
Query 802 AATCGATCTCGAGTATGCAAGCTGGCTTGGTCAAAACCAGGTTCCAATGACTTTGATATT 861
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 AATCGATCTCGAGTACGCAAGCTGGCTTGGTCAAAACCAGGTTCCAATGACTTTGATATT 780
Query 862 CACAAAATGCGACAAGAGAAAGAAGAAGAAAAATGGAGGGAAGAAACCGGAGGCGAACAT 921
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 781 CACAAAATGCGACAAGAGAAAGAAGAAGAAAAATGGAGGGAAAAAACCGGAGGAGAACAT 840
Query 922 AAAGGAGTTCCAAGACTTGATCCAAGGGTTCTTTGAGACAACACCGCCATGGATTATGAC 981
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 841 AAAGGAGTTCCAAGACTTGATCCAAGGGTTCTTTGAGACAACACCACCATGGATTATGAC 900
Query 982 CAGCAGTGTGACGAATCAAGGTCGGGACGAGATATTGTTGCATATGGCTCAGCTAAGAAA 1041
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 CAGCAGTGTGACGAATCAAGGTCGGGACGAGATATTGTTGCATATGGCTCAGCTAAGAAA 960
Query 1042 CTACTGGCTCAAACACTGAGAACCAAAACAACACTTCTC 1080
||||||||| ||||||| |||||| |||| |||||||||
Sbjct 961 CTACTGGCTGAAACACTAAGAACCCAAACCACACTTCTC 999
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45442517064
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5