BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G11500.1
Length=1222
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940626 jgi|Araly1|940626|scaffold_601170.1 1498 0.0
> Ahg940626 jgi|Araly1|940626|scaffold_601170.1
Length=870
Score = 1498 bits (811), Expect = 0.0
Identities = 851/870 (98%), Gaps = 3/870 (0%)
Strand=Plus/Plus
Query 106 GAGAGAGGGGGAAACCCTAGATTCGATCTCCATTCGATTTGATTCGTTTCTCGAATCGAA 165
|||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 1 GAGAGA-GGGGAAACCCTAGATTCGATCTCCATTCGATTTGGTTCGTTTGTCGAATCGAA 59
Query 166 GCGATGGTTTTCTACTTCAAGGCCCGTCCTGATGCTGGCGACTACACCATCTTCATGGGG 225
|||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 60 GCGATGGTGTTCTACTTCAAGGCCCGACCGGATGCTGGCGACTACACCATCTTCATGGGG 119
Query 226 CTTGATAAGTTCGAGAACGAGGAGCTCATCAAGTACGGCTTCCCTGAAGATGTCTGGTTT 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CTTGATAAGTTCGAGAACGAGGAGCTCATCAAGTACGGCTTCCCTGAAGATGTCTGGTTT 179
Query 286 CACGTGGATAAAATGTCGTCAGCTCATGTTTACTTGAGGCTTCATAGAGGCCAAAGTTTT 345
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 180 CACGTGGATAAAATGTCGTCAGCTCATGTTTACCTGAGGCTTCACAGAGGCCAAAGTTTT 239
Query 346 GATGACATTAGTGAAGGTGTGCTGGAGGACTGTGCTCAGCTTGTGAAAGCTAACTCCATT 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GATGACATTAGTGAAGGTGTGCTGGAGGACTGTGCTCAGCTTGTGAAAGCTAACTCCATT 299
Query 406 CAAGGCAACAAGGTGAACAACGTTGATGTTGTGTACACTCCGTGGTCCAACTTGAAGAAA 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CAAGGCAACAAGGTGAACAACGTTGATGTTGTGTACACTCCGTGGTCCAACTTGAAGAAA 359
Query 466 ACTGCCTCCATGGATGTTGGTCAAGTTGGTTTCCACAATTCAAAGATGGTCCGGACTATC 525
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 ACTGCTTCCATGGATGTTGGTCAAGTTGGTTTCCACAATTCAAAGATGGTCCGGACTATC 419
Query 526 AGAGTGGAGAAGCGAGTCAATGAAATAGTTAACAGACTGAACAAAACAAAAGTTGAAAGA 585
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 420 AGAGTGGAGAAGCGAGTCAATGAAATAGTTAACAGATTGAACAAAACAAAAGTTGAAAGA 479
Query 586 ACCCCTGATCTGAGAGCCGAGAGAGAAGCAGTGAATGCCGCAGAAAGGGCAGAGAGGAAA 645
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 480 ACTCCTGATCTGAGAGCCGAGAGAGAAGCAGTGAATGCTGCAGAAAGGGCAGAGAGGAAA 539
Query 646 CAACATCTGAGGGAGAAGAAGAAACGTGAAGAGATAGATAGGCTTGAGAAGGAGAGGCAA 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CAACATCTGAGGGAGAAGAAGAAACGTGAAGAGATAGATAGGCTTGAGAAGGAGAGGCAA 599
Query 706 TCAGAGATGAGGAGTTACAAGGGACTAATGGTAACTGATAAAATGACATCCAACAAAGAC 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TCAGAGATGAGGAGTTACAAGGGACTAATGGTAACTGATAAAATGACATCCAACAAAGAC 659
Query 766 ATTGCTTCAAGCAACAAATCGCTTCAAGAACTTGAAGACGATTTCATGTAAAAGCTCTGA 825
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 660 ATTGCTTCAAGCAACAAATCGCTTCAAGAACTGGAAGACGATTTCATGTAAAAGCTCTGA 719
Query 826 AGAAATGAGAAACAAAACAAACCAAGTCGGTAACATTCTGCCAGAGATGATCTGGTACCG 885
|||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 720 AGAAATGAGAAA-AAA-CAAACCAAGTCGGTAACATTCTGCCAGAGGTGATCTGGTACCG 777
Query 886 TCCTTCAAAGAAGGCTTATGATGTTCTACTCGCCTTAACTATGATGTTGATGGTTGTCCG 945
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 778 TCCTTCAAAGAAGGCTTATGATGTTCTACTCGCCTTAATTATGATGTTGATGGTTGTCCG 837
Query 946 GTTCTATGTTTTCTTTaaaaaaaTCTTGAA 975
||| |||||||||||| |||||||||||||
Sbjct 838 GTTTTATGTTTTCTTTCAAAAAATCTTGAA 867
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45633131649
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5