BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G11510.1
Length=3406
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487987 jgi|Araly1|487987|fgenesh2_kg.6__1121__AT5G11510.1 5040 0.0
> Ahg487987 jgi|Araly1|487987|fgenesh2_kg.6__1121__AT5G11510.1
Length=3333
Score = 5040 bits (2729), Expect = 0.0
Identities = 3072/3234 (95%), Gaps = 38/3234 (1%)
Strand=Plus/Plus
Query 169 GATTGGATTTACTTTGGGCATTTTGGTCTCTCCAGTTTCTGGGTATCGTCGTTGTCTCTC 228
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 120 GATTGGATTTACTTTGGACATTTTGGTCTCTCCAGTTTCTGGGTATCGTCATTGTCTCTC 179
Query 229 TCCGATTTATGAACCACTTCCATTTCTGAAGCTCGCATAGAGAAGAAAGGCAACGTATGG 288
| |||||| || | | |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 180 TTCGATTTCTG-ATTAGTTCCATTTCTAAAGCTCGCATAGAGAAGAAAGGCAACGTATGG 238
Query 289 GAATTGGGGTGACTATTTTTGCATTTTCATTGACTAGTTATGG-AAGCTGAGTCTT---C 344
|||||||||| ||||||||||||||||||||||| || ||||| ||| |||||||| |
Sbjct 239 GAATTGGGGTAACTATTTTTGCATTTTCATTGACAAGGTATGGAAAG-TGAGTCTTCAAC 297
Query 345 -A----A-CCCCTCAGGAACGGATCCCGAAATTGCGTCACGGGAGGACTAGTGGCCCTGC 398
| | ||||||| ||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 298 TATCTCAGCCCCTCACGAAGGGATCCCGAAATCGCGTCACGGGAGGACTAGTGGCCCTGC 357
Query 399 AAGACGTTCAACTCGAGGCCAATGGACAGCTGAGGAGGATGAGATCTTGAGAAAAGCTGT 458
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 358 AAGACGTTCAACTCGAGGTCAATGGACAGCTGAGGAGGATGAGATCTTGAGAAAAGCTGT 417
Query 459 CCATAGTTTCAAAGGAAAAAACTGGAAGAAGATAGCTGAATACTTCAAGGATCGAACTGA 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 CCATAGTTTCAAAGGAAAAAACTGGAAGAAGATAGCTGAATACTTCAAGGATCGAACTGA 477
Query 519 TGTCCAGTGCCTCCACAGGTGGCAAAAGGTCCTTAATCCTGAACTTGTTAAAGGGCCCTG 578
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||
Sbjct 478 TGTCCAGTGCCTCCACAGGTGGCAGAAGGTCCTTAATCCTGAACTTGTTAAAGGACCGTG 537
Query 579 GACGAAGGAGGAAGATGAAATGATCGTTCAGTTAATCGAAAAATATGGGCCGAAGAAGTG 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 GACGAAGGAGGAAGATGAAATGATCGTTCAGTTAATCGAAAAATATGGGCCGAAGAAGTG 597
Query 639 GTCCACTATTGCTCGATTTTTACCTGGCCGTATTGGAAAGCAATGTAGAGAGAGGTGGCA 698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 GTCCACTATTGCTCGATTTTTACCTGGCCGTATTGGAAAGCAATGTAGAGAGAGGTGGCA 657
Query 699 CAATCATCTCAATCCTGCCATAAACAAAGAAGCTTGGACTCAAGAAGAAGAGCTGCTTCT 758
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 658 CAATCATCTCAATCCTGCCATAAACAAAGAAGCTTGGACTCAAGAAGAAGAGCTGGTTCT 717
Query 759 GATTCGTGCTCATCAAATATATGGTAATAGATGGGCTGAGTTAACAAAGTTCTTGCCTGG 818
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 718 GATTCGTGCTCATCAAATATACGGTAATAGATGGGCAGAGTTAACAAAGTTCTTGCCTGG 777
Query 819 AAGGTCGGATAATGGAATTAAAAATCACTGGCACAGTTCAGTCAAGAAGAAACTTGATTC 878
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 AAGGTCGGATAATGGAATTAAAAATCACTGGCACAGTTCAGTCAAGAAGAAACTTGATTC 837
Query 879 CTACATGTCGTCTGGCCTTTTGGATCAGTACCAAGCCATGCCTCTAGCTCCTTATGAGAG 938
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 CTACATGTCGTCTGGCATTTTGGATCAGTACCAAGCCATGCCTCTAGCTCCTTATGAGAG 897
Query 939 AAGTTCTACATTACAATCAACTTTTATGCAAAGTAATATAGATGGAAATGGCTGCCTAAA 998
|||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 898 AAGTTCCACATTACAATCAAGTTTTATGCAAAGCAATATAGATGGAAATGGCTGCCTAAA 957
Query 999 TGGACAGGCAGAGAACGAAATAGACAGCCGTCAAAATTCAAGCATGGTTGGCTGCTCACT 1058
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 958 CGGACAGGAAGAGAACGAAATAGACAGCCGTCAAAATTCAAGCATGGTTGGCTGCTCGCT 1017
Query 1059 ATCTGCAAGAGACTTTCAAAATGGAACTATCAATATTGGGCATGATTTCCACCCCTGTGG 1118
|||||||||||| |||||||||||| | || ||||| |||||||||||||||||||||||
Sbjct 1018 ATCTGCAAGAGATTTTCAAAATGGAGCCATAAATATGGGGCATGATTTCCACCCCTGTGG 1077
Query 1119 AAACTCTCAAGAGAATGAGCAAACTGCGTATCATTCAGAGCAGT-TTTACTATCCGGAAT 1177
|||||||||||||||||||||||||| ||||||||||| |||| ||| |||||||||||
Sbjct 1078 AAACTCTCAAGAGAATGAGCAAACTGTATATCATTCAGATCAGTATTT-CTATCCGGAAT 1136
Query 1178 TGGAGGATATCTCAGTCTCCATCTCCGAAGTCTCTTATGACATGGAAGACTGTTCACAGT 1237
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1137 TGGAAGATATCTCAGTCTCCATCTCAGAAGTCTCTTATGACATGGAAGACTGTTCACAGT 1196
Query 1238 TTCCTGATCATAATGTCTCGACTTCTCCAAGCCAGGATTACCAATTTGATTTTCAGGAAC 1297
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1197 TTCCTGATCATAATGTCTCAACTTCTCCGAGCCAGGATTACCAATTTGATTTTCAGGAAC 1256
Query 1298 TATCAGATATATCACTCGAGATGAGACATAATATGTCAGAAATACCAATGCCATACACCA 1357
| || ||||| ||||| |||||||||||| |||||||||| |||||||||||||||| |
Sbjct 1257 TCTCGGATATTTCACTGGAGATGAGACATGATATGTCAGAGATACCAATGCCATACATGA 1316
Query 1358 AGGAGAGCAAGGAATCTACTCTGGGAGCTCCAAACTCCACATTAAATATTGATGTGGCTA 1417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 AGGAGAGCAAGGAATCTACTCTGGGAGCTCCAAACTCCACATTAAATATTGATGTGGCTA 1376
Query 1418 CTTACACCAACTCAGCAAACGTTTTGACACCTGAAACGGAATGTTGCAGGGTACTTTTCC 1477
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 CTTACACCAACTCAGCAAATGTTTTGACACCTGAAACGGAATGTTGCAGGGTACTTTTCC 1436
Query 1478 CTGATCAAGAGAGTGAAGGGCACAGTGTTTCTAGATCTTTGACCCAAGAGCCAAACGAGT 1537
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1437 CTGATCAAGAGAGTGAAGGGCACAGTGTTTCTAGATCTTTGACCCAAGAGTCAAACCAGG 1496
Query 1538 TTAACCAGGTAGACCGTCGAGATCCTATCTTGTATTCATCAGCTTCAGACAGACAGATAT 1597
|| |||||| |||||| |||||||||||||||| | ||||||||||||||||||||||||
Sbjct 1497 TTGACCAGGCAGACCGCCGAGATCCTATCTTGTGTGCATCAGCTTCAGACAGACAGATAT 1556
Query 1598 CAGAAGCTACAAAATCTCCTACGCAGAGCTCTTCTTCAAGGTTCACTGCAACGGCCGCCT 1657
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1557 CAGAAGCTACAAAATCTCCTACGCAGAGCTCTTCTTCAAGGTTCATTGCAACGGCCGCCT 1616
Query 1658 CAGGAAAAGGAACTCTTCGGCCAGCTCCCTTAATCATATCACCAGACAAGTATAGCAAGA 1717
|||| |||| |||||||||||||||||||||||||||||| || |||||||||| |||||
Sbjct 1617 CAGGCAAAGAAACTCTTCGGCCAGCTCCCTTAATCATATCGCCCGACAAGTATACCAAGA 1676
Query 1718 AGTCATCTGGATTGATATGTCATCCCTTTGAGGTAGAACCAAAGTGCACAACAAATGGAA 1777
||||||||||||||||||| ||||| ||||||| || |||||||||||||||||||||||
Sbjct 1677 AGTCATCTGGATTGATATGCCATCCTTTTGAGGCAGTACCAAAGTGCACAACAAATGGAA 1736
Query 1778 ATGGTAGCTTCATATGCATCGGTGATCCATCAAGCTCCACTTGTGTTGATGAAGGGACCA 1837
||||||||||||||||||||| |||| |||||| ||||||||||||||||||||| ||||
Sbjct 1737 ATGGTAGCTTCATATGCATCGATGATTCATCAATCTCCACTTGTGTTGATGAAGGAACCA 1796
Query 1838 ATAACTCCAGCGAAGAAGATCAATCATATCATGTGAATGATCCCAAAAAGTTGGTTCCAG 1897
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1797 ATAACTCCAGCGAAGAAGATCAATCATATCATGTGAGTGATCCCAAAAAGTTGGTTCCAG 1856
Query 1898 TGAATGATTTTGCTTCTCTGGCAGAAGATAGGCCACACTCTCTACCTAAGCATGAGCCAA 1957
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1857 TGAATGATTTTGCTTCTCTGGCGGAAGATAGGCCACACTCTCTTCCTAAGCATGAGCCAA 1916
Query 1958 ACATGACAAACGAGCAGCATCATGAGGATATGGGGGCATCATCAAGTCTTGG-TTTCCCA 2016
||||||||| |||||||||||||||||||| |||||||||||| |||||||| ||||| |
Sbjct 1917 ACATGACAAGCGAGCAGCATCATGAGGATACGGGGGCATCATCTAGTCTTGGGTTTCC-A 1975
Query 2017 AGCTTCGACTTACCTGTTTTTAACTGTGATCTTCTACAATCTAAAAATGATCCTCTACAC 2076
||||| ||| ||||||| || | |||||||||||||||||| ||||| ||||||||||||
Sbjct 1976 AGCTTGGACCTACCTGTGTTCAGCTGTGATCTTCTACAATCCAAAAACGATCCTCTACAC 2035
Query 2077 GATTATAGCCCACTTGGCATACGCAAGCTACTGATGTCCACCATGACGTGCATGAGTCCC 2136
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2036 GATTATAGCCCTCTTGGCATACGCAAGCTACTGATGTCCACCATGACGTGCATGAGTCCC 2095
Query 2137 CTTCGACTGTGGGAATCTCCCACTGGGAAAAAGACGTTGGTTGGTGCACAGTCAATCCTT 2196
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2096 CTTCGACTGTGGGAATCTCCCACTGGGAAAAAGACGTTGGTTGGTGCACAGTCAATCCTG 2155
Query 2197 AGGAAACGGACCCGTGATCTGCTGACACCGTTATCTGAGAAAAGAAGTGATAAAAAGCTT 2256
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2156 AGGAAACGAACTCGTGATCTGCTGACACCGTTATCTGAGAAAAGAAGTGATAAAAAGCTT 2215
Query 2257 GAAATTGATATAGCAGCCAGTCTGGCAAAAGACTTTTCACGTTTAGATGTGATGTTTGAT 2316
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 2216 GAAATTGATATAGCAGCCAGTCTGGCAAAAGATTTTTCACGTCTAGATGTGATGTTTGAT 2275
Query 2317 GAGACTGAGAATCGGCAATCTAATTTT-GGAAATAGCACTGGTGTCATCCATGGAGATAG 2375
|| | ||||||||| ||||||| | || |||||||||||||||||||| |||||||||||
Sbjct 2276 GAAAGTGAGAATCGACAATCTA-TCTTCGGAAATAGCACTGGTGTCATTCATGGAGATAG 2334
Query 2376 AGAAAACCACTTTCACATTTTGAA-TGGAGACGGTGAAGAATGGAGTGGCAAGCCTTCTT 2434
||||||||||||||| ||||| || |||||| ||||||||| | ||| ||||||||||
Sbjct 2335 AGAAAACCACTTTCAAATTTT-AAGTGGAGAAGGTGAAGAAA--ATTGG-AAGCCTTCTT 2390
Query 2435 CACTCTTTAGTCACAGAATGCCAGAAGAAACCATGCATATCAGAAAATCGCTTGAGAAAG 2494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2391 CACTCTTTAGTCACAGAATGCCAGAAGAAACCATGCATATCAGAAAATCGCTTGAGAAAG 2450
Query 2495 TAGACCAAATTTGCATGGAGGCAAATGTCAGGGAAAAGGATGATTCTGAACAAGATGTTG 2554
||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2451 CAGATCAAACTTGCATGGAGGCAAATGTCAGGGAAAAGGATGATTCTGAACAAGATGTTG 2510
Query 2555 AGAATGTTGAATTTTTCTCTGGTATTCTTTCTGAGCACAATACCGGTAAGCCAGTCCTGT 2614
||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||
Sbjct 2511 AGAATGTTGAATTTTTCTCTGGTGTTCTTTCTGAGCACAACACCGGCAAGCCAGTCCTGT 2570
Query 2615 CTACTCCTGGTCAGTCAGTTACTAAAGCAGAGAAGGCGCAAGTTTCAACCCCAAGAAATC 2674
|| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2571 CTTCTCCTGGTCAATCAGTTACTAAAGCAGAGAAGACGCAAGTTTCAACCCCAAGAAATC 2630
Query 2675 AGTTGCAAAGAACTCTCATGGCTACGTCTAACAAAGAACATCATTCCCCTTCAAGTGTTT 2734
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2631 AATTGCATAGAACTCTCATGGCTACGTCTAACAAAGAACATCATTCCCCTTCAAGTGTTT 2690
Query 2735 GTTTAGTGATTAATTCGCCTTCTCGAGCGAGAAACAAGGAGGGTCATCTTGTTGACAATG 2794
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 2691 GTTTAGTGATTAATTCGCCTTCTCGAGCAAGAAGCAAGGAGGGTCATCTTGTTGACAATG 2750
Query 2795 GGACAAGCAATGAGAATTTTAGCATATTCTGTGGAACTCCATTCAGGAGAGGTCTTGAAT 2854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2751 GGACAAGCAATGAGAATTTTAGCATATTCTGTGGAACTCCATTCAGGAGAGGTCTTGAAT 2810
Query 2855 CTCCCTCAGCCTGGAAATCTCCATTTTACATAAACTCTCTCTTGCCCAGCCCAAGGTTTG 2914
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2811 CTCCCTCAGCCTGGAAATCTCCATTTTACATAAACTCTCTCTTGCCCAGCCCAAGGTTTG 2870
Query 2915 ACACAGAT-TTAACTATCGAGGACATGGGCTACATTTTCAGTCCTGGGGAGAGAAGCTAC 2973
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2871 ACACAGATATTA-CTATCGAGGACATGGGCTACATTTTCAGTCCTGGGGAGAGAAGC-A- 2927
Query 2974 GAGAGCATAGGAGTGATGACACAGATAAATGAACATACAAGTGCATTTGCAGCTTTTGCA 3033
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2928 -------TAGGAGTGATGACACAGATAAATGAACATACAAGTGCATTTGCAGCTTTTGCA 2980
Query 3034 GATGCAATGGAGGTTTCAATTTCACCTACTAATGATGATGCGAGGCAGAAGAAGGAATTG 3093
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2981 GATGCAATGGAAGTTTCAATTTCACCAACTAATGATGATGCGAGGCAGAAGAAGGAATTG 3040
Query 3094 GATAAAGAGAATAATGATCCTCTACTGGCGGAGCGTCGAGTGCTGGACTTCAACGATTGC 3153
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3041 GATAAAGAGAACAATGATCCTCTACTGGCGGAGCGTCGAGTGCTGGACTTCAACGATTGC 3100
Query 3154 GAGTCTCCAATCAAAGCAACAGAAGAAGTCTCATCCTACCTCTTGAAGGGATGTAGGTAA 3213
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3101 GAGTCTCCCATCAAAACAACAGAAGAAGTCTCATCCTACCTCTTGAAGGGATGTAGGTAA 3160
Query 3214 AATGCCAAAAGCTTATACATAATATGCAAAATGCACCATACATGAACAATGTATAAATAT 3273
||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 3161 AATGCCAAAAGCTCATACATAATATGCAAAATGCAT-ATACATGAACAATGTATAAAAAT 3219
Query 3274 GTATGTGCATCTTTTATGAATTATCCCTGGCTGGATCA-Atttttttt-CTCTGTTTCTT 3331
|||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||
Sbjct 3220 GTATGTGCATCTTTTATGAATTATCCCTGGCTGGATCATATTTTTTTTTCTTTGTTTCTT 3279
Query 3332 TTTAATGGATCAATTGGAGTGAATTTATGTAGA-TTCTGTGTTCAATATATATA 3384
|||| ||||||| |||||||||||||||||| | ||||||||||||||||||||
Sbjct 3280 TTTATTGGATCAGTTGGAGTGAATTTATGTAAAATTCTGTGTTCAATATATATA 3333
Score = 126 bits (68), Expect = 9e-28
Identities = 82/88 (93%), Gaps = 3/88 (3%)
Strand=Plus/Plus
Query 13 TTTTGAATTTCCGCCAGTCTTGTTTTG-AAATAGCTCTGCCGACCGTTTAGATTTCTCTC 71
||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1 TTTCGAATTTCCGCCATTCTTGTTTTGAAAATAGCTCTGCCGACCGTTTAGATTTCTCTC 60
Query 72 TTTTATCTATCTTCTCTGGGAAAATTTT 99
|| ||||||||||||||| ||||||||
Sbjct 61 ATT-ATCTATCTTCTCTGG-AAAATTTT 86
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 128596539167
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5