BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G11530.1
Length=4059
Score E
Sequences producing significant alignments: (Bits) Value
Ahg893068 jgi|Araly1|893068|Al_scaffold_0006_1064 4959 0.0
> Ahg893068 jgi|Araly1|893068|Al_scaffold_0006_1064
Length=3309
Score = 4959 bits (2685), Expect = 0.0
Identities = 3115/3320 (94%), Gaps = 40/3320 (1%)
Strand=Plus/Plus
Query 386 ATGGGATCTTCCATCAAGATCAACTCAATATCCATAGATCTCGCAGGTGCTGCCAACGAG 445
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGGGATCATCCATCAAGATCAACTCAATATCCATAGATCTCGCAGGCGCTGCCAACGAG 60
Query 446 ATTGATATGGTGAAATGTGATCATTTTTCCATGCGTGGATTCGTAGCTGAAACTCGTGAG 505
|||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||
Sbjct 61 ATTGATATGGTGAAATGTGATCATTTCTCCATACGTGGATTCGTAGCTGAAACCCGTGAG 120
Query 506 AGAGACCTTAGAAAATGTTGGCCGTTTT-CAGAAGAGAGTGTTAGTTTAGTAGACCAACA 564
||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||
Sbjct 121 AGAGACCTTAGAAAATGTTGGCC-TTTTGCAGAAGAGAGTGTTAGTTTAGTGGACCAACA 179
Query 565 AAGCTATACTCTTCCTACTTTATCTGTTCCAAAGTTTAGATGGTGGCATTGTATGAGCTG 624
|| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AAACTATTCTCTTCCTTCTTTATCTGTTCCAAAGTTTAGATGGTGGCATTGTATGAGCTG 239
Query 625 CATCAAAGATATAGATGCTCATGGGCCAAAAGATTGTGGACTGCATTCAAACTC-AAAAG 683
||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||
Sbjct 240 CATCAAAGATATAGATGCTCATGGGACAAAAGATTGTGGACTGCATTCAAACTCGAGAA- 298
Query 684 CTATTGGAAACTCTTCTGTTA-TCGAAAGTAAAAGCAAGTTCAATTCGCTAACTATCATT 742
|||||||||||||||| |||| || ||||| |||||| || |||||||| |||||||||
Sbjct 299 CTATTGGAAACTCTTCGGTTATTC-CAAGTAGAAGCAAATTGAATTCGCTTACTATCATT 357
Query 743 GATCACGAGAAAGAAAAGAAAACTGATATTGCAGATAATGCTATTGAGGAGAAAGTGGGT 802
|||||||||||||||||||||| ||||||||||| ||||||| |||||||||| ||||||
Sbjct 358 GATCACGAGAAAGAAAAGAAAATTGATATTGCAGGTAATGCTGTTGAGGAGAATGTGGGT 417
Query 803 GTAAACTGTGAGA-A--T------GATGATCAGACAGCTACTACGTTTCTCAAGAAAGCA 853
|| |||||||||| | | ||||||||||||||||||||||||||||||||||
Sbjct 418 GTTAACTGTGAGAGACCTCAGAAGGATGATCAGACAGCTACTACGTTTCTCAAGAAAGTT 477
Query 854 CGTGGTCGACCTATGGGTGCTTCTAATGTTAGGAGCAAGAGCAGAAAGCTTGTGAGTCCG 913
|||| ||||||||||| |||||||| || ||||||||||||||||||||| | ||||||
Sbjct 478 CGTGCTCGACCTATGGATGCTTCTACTGGTAGGAGCAAGAGCAGAAAGCTCGCGAGTCCA 537
Query 914 GAGCAGGTAGGAAACAACAGATCTAAAGAAAAACTAAACAAACCATCGATGGATATTAGC 973
||||||||||| ||||| ||||||||||||||| |||||||| |||||||||||||||||
Sbjct 538 GAGCAGGTAGGCAACAAGAGATCTAAAGAAAAAGTAAACAAATCATCGATGGATATTAGC 597
Query 974 AGCTGGAAAG---AGAAACAAAATGTGGATCAGGCTGTGACAACGTTCGGCTCATCTGAA 1030
|||||||||| ||||||| ||||||||||||||| ||||||| ||||| |||||||||
Sbjct 598 AGCTGGAAAGATCAGAAACATAATGTGGATCAGGCTATGACAACTTTCGGGTCATCTGAA 657
Query 1031 ATTGCTGGTGTGGTTGAGGATACACCACCTAAGGCAACCAAGAATCATAAAGGCATTCGC 1090
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 658 ATTGCTGGTGTGGTTGAGGATACACCACCCAAGGCAACCAAGAATCATAAAGGCATTCGT 717
Query 1091 GGTCTGATGGAATGCGATAACGGGTCATCAGAAAGTATAAATCTTGCTATGAGTGGGTTG 1150
|||||||||||||| || || ||||||||||| |||||||||||||||||||||||||||
Sbjct 718 GGTCTGATGGAATGTGACAATGGGTCATCAGAGAGTATAAATCTTGCTATGAGTGGGTTG 777
Query 1151 CAGCGTAGGAAATCTCGCAAGGTTCGTCTACTCAGTGAGTTGCTTGGTAATACAAAAACC 1210
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 778 CAGCGTAGGAAATCTCGCAAGGTTCGTCTACTCAGTGAGTTGCTTGGTAATACGAAAACC 837
Query 1211 AGTGGTGGTAGTAACATCAGAAAAGAAGAGTCTGCTTTGAAGAAGGAATCAGTTAGAGGT 1270
||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 838 AGTGGTGGTAGTAGTATCAGAAAAGAAGAGTCTGCTTTGAAAAAGGAATCGGTTAGAGGG 897
Query 1271 CGAAAAAGAAAGTTGTTACCTGAAAACAATTATGTCAGCCGGATATTGAGTACAATGGGT 1330
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 AGGAAAAGAAAGTTGTTACCTGAAAACAATTATGTCAGCCGGATATTGAGTACAATGGGG 957
Query 1331 GCAACCTCTGAAAATGCTTCCAAAAGTTGTGACTCTGATCAAGGTAATAGTGAATCAACT 1390
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 GCAACCTCTGAAAATGCCTCCAAAAGTTGTGACTCTGATCAAGGTAATAGTGAATCAACT 1017
Query 1391 GATAGTGGGTTTGACAGAACTCCATTTAAGGGTAAGCAGAGAAACAGAAGATTTCAGGTT 1450
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 GATAGTGGATTTGACAGAACTCCATTTAAGGGTAAGCAGAGAAACAGAAGATTTCAGGTT 1077
Query 1451 GTTGACGAGTTTGTACCATCACTTCCTTGTGAAACTTCACAAGAAGGTATCAAGGAGCAT 1510
||||||||||||||||||||||||||||||||| |||||||||| || ||| |||||||
Sbjct 1078 GTTGACGAGTTTGTACCATCACTTCCTTGTGAAGCTTCACAAGAGGGCGTCATGGAGCAT 1137
Query 1511 GATGCAGATCCTAGTAAGAGATCAACTCCTGCGCACTCTTTATTCACTGGAAACGATTCT 1570
||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||| |
Sbjct 1138 GATGCAGATCCCAGTAAGAGATCAACTCCTGTGCACTCTTTATTCACTGGAAAAGATT-T 1196
Query 1571 -GTTCCTTGTCCTCCGGGTACTCAGAGAACAGAGAGGAAGCTCAGTTTACCCAAGAAGAA 1629
||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 1197 GGTTCCTTGTCCTCCGAGTACTCAGAGAACAGAGAGGAAGCCCAGTTTAGCCAAGAAGAA 1256
Query 1630 GACAAAGAAGCCTGTAATCGATAATGGGAAGAGCACTGTGATCAGTTTTAGTAACGGCAT 1689
|||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||
Sbjct 1257 GACAAAGAAGCCTGTAATAGATAATGGGAAGAGCACCGTGATCAGTTTTAGTACCGGCAT 1316
Query 1690 TGATGGAAGTCAAGTTAACTCGCATACTGGTCCTTCCATGAA-CACAGTATCCCAAACTC 1748
|||||||| ||||||||| ||||| |||||||||||||| || ||| || ||||||||||
Sbjct 1317 TGATGGAAATCAAGTTAAATCGCAAACTGGTCCTTCCAT-AAGCACTGTTTCCCAAACTC 1375
Query 1749 GAGACTTATTGAATGGGAAAAGGGTGGGCGGTTTATTTGACAACCGTTTGGCTTCAGATG 1808
||| || ||||||| ||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1376 AAGATTTGTTGAATGAGAAAAGGGTGGGCAGTATATTTGACAACCGTTTGGCTTCAGATG 1435
Query 1809 GATATTTCAGAAAATATCTCTCTCAGGTTAATGATAAGCCGATAACATCTTTGCATTTGC 1868
|||||||||| |||||| || ||||| |||||||||||| ||||| |||||||||||||
Sbjct 1436 GATATTTCAGGAAATATATCACTCAGCCTAATGATAAGCCCATAACTTCTTTGCATTTGC 1495
Query 1869 AAGACAATGATTATGTGAGGTCAAGAGACGCGGAACCAAACTGTCTTCGAGATTTTAGTT 1928
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1496 AAGACAATGATTATGTGAGGTCAAGAGACGCGGAACCAAACTGTCTTCGAGATTTTAGTT 1555
Query 1929 CCTCTTCTAAATCCAGCTCAGGTGGATGGTTGAGAACTGGAGTAGATATTGTTGACTTCA 1988
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1556 CCTCTTCTAAATCCAGCTCAGGTGGATGGTTGAGAACTGGAGTAGATATTGTTGACTTCA 1615
Query 1989 GAAACAACAACCACAATACAAACAGATCGTCTTTCTCGAACTTGAAGCTAAGATACCCCC 2048
|||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||||
Sbjct 1616 GAAACAACAACCACAATACAAATAGATTGTCTTTCTCGAACTTGAACCTAAGATACCCCC 1675
Query 2049 CTTCTTCTACTGAAGTTGCGGATTTATCTCGGGTGCTGCAAAAGGATGCTTCTGGTGCAG 2108
|||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 1676 CTTCTTCTACTGAATTTGCGGAAGTATCTCGGGTGCTGCAAAAGGATGCTTCTGGTGTAG 1735
Query 2109 ATAGAAAGGGGAAGACTGTTATGGTCCAAGAACATCATGGAGCACCAAGAAGCCAAAGTC 2168
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1736 ACAGAAAGGGGAAGACTGTTATGGTCCAAGAACATCATGGAGCACCAAGAAGCCAAAGCC 1795
Query 2169 ACGATAGAAAGGAGACTACGACTGAAGAGCAAAACAACGATGATATTCCAATGGAGATAG 2228
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1796 ACGATAGAAAGGAGACTACGACTGAAGAGCAAAACAACGATGATATTCCCATGGAGATAG 1855
Query 2229 TGGAGCTCATGGCCAAAAACCAGTACGAGAGGTGTCTTCCCGACAAAGAAGAAGATGTTA 2288
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1856 TGGAGCTCATGGCCAAAAACCAGTACGAGAGGTGTCTTCCCGACAAAGAAGAAGACGTTA 1915
Query 2289 GCAACAAACAGCCATCACAAGAAACAGCACACAAATCCAAGAATGCTCTACTGATTGATC 2348
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1916 GCAACAAACAGCCATCACAAGAAACGGCACACAAATCCAAGAATGCACTACTGATTGATC 1975
Query 2349 TCAATGAAACCTACGATAACGGGATCTCACTTGAGGACAACAACACATCAAGACCACCAA 2408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1976 TCAATGAAACCTACGATAACGGGATCTCACTTGAGGACAACAACACATCAAGACCACCAA 2035
Query 2409 AACCGTGTAGTAGCAACGCAAGGAGGGAAGAACATTTTCCTATGGGAAGACAGCAGAACT 2468
|||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 2036 AACCGTGTGGTAGCAACGCAAGGAGGGAAGAATATTTTCCTATGGGAAAACAGCAGAACT 2095
Query 2469 CTCATGACTTCTTCCCAATAAGTCAGCCTTATGTGCCTTCTCCGTTTGGGATCTTTCCTC 2528
||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2096 CTCATGATTTTTTCCCAATAAGTCAGCCTTATGTGCCTTCTCCTTTTGGGATCTTTCCTC 2155
Query 2529 CTACCCAAGAAAACCGAGCCAGCTCCATCCGGTTTTCTGGTCACAACTGTCAGTGGCTTG 2588
| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2156 CCACGCAAGAAAACCGAGCCAGCGCCATCCGGTTTTCTGGTCACAACTGTCAGTGGCTTG 2215
Query 2589 GGAATTTGCCAACTGTGGGTAATCAGAACCCTTCTCCATCCTCATTTCGGGTATTACGTG 2648
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2216 GGAATTTGCCAACTGTGGCTAATCAGAACCCTTCTCCATCCTCATTTCGGGTATTACGTG 2275
Query 2649 CTTGTGATACTTGCCAGAGTGTTCCTAATCAATACAGAGAAGCTTCTCATCCAATTTGGC 2708
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2276 CTTGCGATACGTGCCAGAGTGTTCCTAATCAATACAGAGAAGCTTCTCATCCAATTTGGC 2335
Query 2709 CATCTTCCATGATACCACCACAGAGTCAATAC-AAGCCAGTTTCTTTAAATATTAATCAG 2767
|||| ||||||||||||||||||||||| | | |||||||||||||| ||||| |||||
Sbjct 2336 CATCCTCCATGATACCACCACAGAGTCA-TCCCAAGCCAGTTTCTTTCAATATGGATCAG 2394
Query 2768 TCAACAAATCCGGGTACGCTTTCACAGGCATCTAACAATGAAAATACATGGAACCTCAAC 2827
|||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 2395 TCAACAAAGCCGGGTACGCTTTCACAGGCATCTAATAATGAAAATACGTGGAACCTCAAC 2454
Query 2828 TTTGTTGCTGCCAACGGGAAGCAAAAATGTGGGCCTAATCCAGAATTTTCATTTGGCTGC 2887
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 2455 TTTGTTGCTGCCAACGGGAAGCAAAAATGTGGGCCTAATTCAGAATTCTCATTTGGCTGC 2514
Query 2888 AAACATGCTGCTGGGGTtagtagtagtagtagtag--G-CCAATAGATAACTTTTCTAGT 2944
||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||
Sbjct 2515 AAACATGCTGCTGGGGTTAGTAGTAGTAGTAGTAGTAGGCCAATTGATAACTTTTCTAGT 2574
Query 2945 GAGAGCTCTATACCGGCATTGCATCTACTCAGCCTTCTGGATCCTCGCCTGAGGTCAACG 3004
|||||||||||||| ||||||||||||||||||||| |||||||||| || ||||||||
Sbjct 2575 GAGAGCTCTATACCAGCATTGCATCTACTCAGCCTTATGGATCCTCGGCTAAGGTCAACC 2634
Query 3005 ACTCCCGCTGACCAACACGGAAACACTAAATTTACTAAAAGACATTTTCCGCCAGCCAAC 3064
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2635 ACTCCTGCTGACCGACACGGAAACACTAAATTTACTAAAAGACATTTTCCGCCAGTCAAC 2694
Query 3065 CAGTCCAAAGAGTTTATAGAGCTTCAAACAGGGGACTCTAGTAAGTCAGCCTACTCAACT 3124
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2695 CAGTCCAAGGAATTTATAGAGCTTCAAACAGGGGACTCTAGTAAGTCAGCCTACTCAACT 2754
Query 3125 AAGCAGATACCTTTTGATCTATACAGCAAGAGATTCACACAAGAGCCTTCCCGGAAGAGT 3184
|| ||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||
Sbjct 2755 AAACAGATACCTTTTGATCTATACAGCAAGAGATTCGCACACGAGACTTCCCGGAAGAGT 2814
Query 3185 TTCCCCATCACTCCACCTATTGGGACGTCTTCACTTTCATTTCAAAATGCT-----T-CA 3238
|||||||||| ||||||| |||||||||||||| ||||||||||||||||| | ||
Sbjct 2815 TTCCCCATCATTCCACCTCTTGGGACGTCTTCATTTTCATTTCAAAATGCTCAAGCTTCA 2874
Query 3239 TGGAGTCCTCATCATCAAGAGAAGAAAACCAAGAGAAAAGACACCTTTGCTCCTGTTTAC 3298
|||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||
Sbjct 2875 TGGAGTCCTCATCA--A-GAGAAGAAAACCAAGAGAAAAGACACCTATGCTCCTGTTTAC 2931
Query 3299 AATACTCATGAAAAGCCGGTGTTTGCAAGCAGCAACGACCAAGCGAAGTTCCAGCTGCTG 3358
||||||||||||||| | ||||||||||||| ||||||||||||||| |||||||| |||
Sbjct 2932 AATACTCATGAAAAGTCTGTGTTTGCAAGCACCAACGACCAAGCGAAATTCCAGCTTCTG 2991
Query 3359 GGAGCATCGAATTCCATGATGCTTCCTTTGAAATTTCACATGACGGATAAAGAAAAGAAA 3418
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 2992 GGAGCATCGAATTCCATGATGCTCCCTTTGAAATTTCACATGACAGATAAAGAAAAGAAA 3051
Query 3419 CAAAAGAGAAAAGCAGAGAGCTGCAATAACAATGCCTCTGCG-GGACCTGTGAAGAACAG 3477
|||||||||||||||||||||||||| || |||||||||||| || ||||| ||||||||
Sbjct 3052 CAAAAGAGAAAAGCAGAGAGCTGCAACAATAATGCCTCTGCGTGG-CCTGTCAAGAACAG 3110
Query 3478 TTCTGGACCCATTGTGTGCAGCGTCAATAGAAACCCTGCTGATTTCACCATTCCTGAACC 3537
||||||| | |||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 3111 TTCTGGATCTATTGTGTGCAGCATCAACAGAAACCCTGCTGATTTCACCATTCCTGAACC 3170
Query 3538 TGGGAATGTTTACATGTTAACGGGTGAACATCTGAAAGTCCGTAAACGCACAACCTTCAA 3597
|||||||||||||||||||||||| |||||||| |||| |||||||||||||||||| ||
Sbjct 3171 TGGGAATGTTTACATGTTAACGGGGGAACATCTTAAAGCCCGTAAACGCACAACCTTGAA 3230
Query 3598 GAAAAAGCCA-GCCGTGTGTAAGCAGGACGCAATGAAGCAGACCAAGAAGCCGGTTTGTC 3656
|||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 3231 GAAAAAGCCAAGCT-TGTGTAAGCAGGACGCAATGAAGCAGACAAAGAAGCCGGTTTGTC 3289
Query 3657 CACCTACACAAAATGCCTAA 3676
|| | ||| |||||||||||
Sbjct 3290 CAGCAACAGAAAATGCCTAA 3309
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 153448134336
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5