BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G11540.1
Length=1758
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487991 jgi|Araly1|487991|fgenesh2_kg.6__1125__AT5G11540.1 2634 0.0
> Ahg487991 jgi|Araly1|487991|fgenesh2_kg.6__1125__AT5G11540.1
Length=1755
Score = 2634 bits (1426), Expect = 0.0
Identities = 1651/1761 (94%), Gaps = 9/1761 (1%)
Strand=Plus/Plus
Query 1 ATGCGTTACTCTCATACTCTCCAGCAGTTCTCAATTCTATCTTTCTTCGTTACAATATGG 60
|||||| ||||||||||||| | || ||||||||||||||||||||||| || ||||||
Sbjct 1 ATGCGTCACTCTCATACTCT-C--CATTTCTCAATTCTATCTTTCTTCGTCACTATATGG 57
Query 61 ACCGTTCAATCAGTACCACCACAACCACCGATTCGATGCGACCAAACCGGCTGCACCGTC 120
||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 58 ACCGTCCAATCCGTACCACCACAACCACCGGTTCGATGCGACCAAACCGGCTGCACCGTC 117
Query 121 TCCAACGCGTACGGCACGTGGCCTGACCGCAAAACCTGTCACGCGGCTAACGTCACATAC 180
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 118 TCCAACGCGTACGGCACGTGGCCTGACCGCAAAACCTGCCACGCGGCTAACGTCACATAT 177
Query 181 CCAACGACGGAGGAAGACCTTCGTAAAGCCGTTGCTTACGCGGCTGAGCACAATCTCAAA 240
|||||||||||||| || |||||||||||||| ||||||||||||||||| | |||||||
Sbjct 178 CCAACGACGGAGGAGGAGCTTCGTAAAGCCGTGGCTTACGCGGCTGAGCATACTCTCAAA 237
Query 241 GTCAAAACCGTCACCAAATTCTCTCACACCATACCGAAACTCGCTTGTCCTTCAGGTTCA 300
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 238 GTCAAAACCGTCACCAAATTCTCTCACACTATACCGAAACTCGCTTGTCCTTCCGGTTCA 297
Query 301 GACGCATTGCTAATTAGTACGTCGAAATATAATTCGGTTATCGAGATTGAACCGGAACTG 360
|||||| |||||||||||||||||||||| ||||||||||||||||||||||| || | |
Sbjct 298 GACGCAATGCTAATTAGTACGTCGAAATACAATTCGGTTATCGAGATTGAACCAGACCGG 357
Query 361 TTAACGGTCACGGCTGATTCTGGAGTTTCGTTGAGAGAGCTGATCGAGAAAGTTGAAGGA 420
|| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 358 TTGACGGTTACGGCTGATTCTGGAGTTTCGTTGAGAGAGCTGATCGATAAAGTTGAAGGA 417
Query 421 GCTGGGTTTAGCATCGGAACGTCACCGTACTGGGAAGGAGTGAGTATCGGTGGGCTGATT 480
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 GCTGGGTTTAGCATCGCAACGTCACCGTACTGGGAAGGAGTGAGTATCGGTGGGCTGATT 477
Query 481 AGTACTGGCTCCCACGGGAGTTCGTGGTCTGGACGAGGTGGTTCGGTTCATGACCATGTT 540
|| || || || ||||| || |||||||| |||||||| |||||||||||||||||||||
Sbjct 478 AGCACAGGGTCACACGGAAGCTCGTGGTCGGGACGAGGCGGTTCGGTTCATGACCATGTT 537
Query 541 GTCGGAATCAGCCTTGTGGTTCCGGCGAAC-CAATCAGAAGGTTTCGCGAAGGTTGTTAG 599
||||||||||||||||||||||||||||| || || ||||||||||| |||||||||||
Sbjct 538 GTCGGAATCAGCCTTGTGGTTCCGGCGAATTCA-TCGGAAGGTTTCGCCAAGGTTGTTAG 596
Query 600 ACTCGAAGAAGGGAGAGATGATACGCTTCTTAACGCCGTTAAAGTGTCGTTGGGTGTTTT 659
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 597 ACTCGAAGAAGGGAGAGATGATAAGCTTCTTAACGCCGTTAAAGTGTCGTTGGGTGTTTT 656
Query 660 AGGAGTCATTTCAAAGGTTAAGCTTTCGATAGAGAAAGCATTTAAGAGAAGTGTGACGTA 719
||||||||| |||||||| || |||||||||||||||||||||||||||||| |||||||
Sbjct 657 AGGAGTCATCTCAAAGGTGAAACTTTCGATAGAGAAAGCATTTAAGAGAAGTATGACGTA 716
Query 720 CAACTTCACATCTGACGTAGCACTTGAAGACATTTTTATGGAGCATGGGAAAAAATACGA 779
|||||||||||||||||||||||||||||||||||||||||||||||||| | || |||
Sbjct 717 TAACTTCACATCTGACGTAGCACTTGAAGACATTTTTATGGAGCATGGGAAGACATTCGA 776
Query 780 ATTCGGAGACATAACTTGGTATCCTTCTAGAAAAACTGCTGTTTACCGTTACGATATCCG 839
||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 777 ATTCGGAGACATAACGTGGTATCCTTCCAGAAAAACTGCGGTTTACCGTTACGATATCCG 836
Query 840 AGCACCGGTCAATGTCTCCGGCAACGGAGTCAACGACTTT-CTTGGTTTTCAGTCTAATC 898
| |||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 837 ATCACCGGTCAACGTCTCCGGCAACGGAGTCAACGACTTTACT-GGTTTTCAGTCTAATC 895
Query 899 CTATCTTGATCTCTAAAGGGGTACGAGCATTAGAGAAGGGGTTTGAATCTAGCAAGAATG 958
||||||||||||||| |||||| ||||||||||||||||| ||||||||| |||||| |
Sbjct 896 CTATCTTGATCTCTAGAGGGGTTCGAGCATTAGAGAAGGGACTTGAATCTACCAAGAACG 955
Query 959 AGAATGGAAAATGCACCACTGCAGATACTACGTTGGCATACAAGAAATTAA-TCGGGAAC 1017
|||||||||||||||||||||| |||||||||||||| ||||||||| ||| | ||||||
Sbjct 956 AGAATGGAAAATGCACCACTGCGGATACTACGTTGGCCTACAAGAAACTAACT-GGGAAC 1014
Query 1018 GGTTTAAAGAATAGTGGTTTAATCTTTACTGGATATCCGGTTATCGGAAGACAAGGCAAG 1077
||| ||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1015 GGTCTAAAGAACAATGGTTTAATCTTTACTGGATATCCGGTTATCGGGAGACAAGGCAAG 1074
Query 1078 ATCCAGACTTCTGGGTCTTGTCTTTACTCATCTTCAATTAGAATTGATGTCGCTTGCGCA 1137
||||| ||||| |||||||| || |||||||||||||||||||||||||| |||||||||
Sbjct 1075 ATCCAAACTTCCGGGTCTTGCCTCTACTCATCTTCAATTAGAATTGATGTGGCTTGCGCA 1134
Query 1138 TGGGACCCGAGATATAACGGTCTTTTCTTTTATGAAACGACTGCAATATTCCCAGTTTCT 1197
|||||||||||||||| ||||||||||| ||||||||||| || |||||||| ||||||
Sbjct 1135 TGGGACCCGAGATATAGTGGTCTTTTCTTCTATGAAACGACAGCTATATTCCCCGTTTCT 1194
Query 1198 AGGTTTAGAGATTTTCTTCTCGACGTGAAGAAGCTACGAGACATGAAACCCGAAAGATTG 1257
||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||| |
Sbjct 1195 AGGTTTAGAGATTTTCTCCTCGACGTGAAGAAGCTACGAGACTTGAAACCCGCAAGACTA 1254
Query 1258 TGCGGGATCGATATCTATAACGGTATCTTCATACGTTTCATAAAGGGCTCAAAGGCTTAT 1317
|||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 1255 TGCGGGATTGATATCTATAACGGTATCCTCATACGTTTCATCAAGGGCTCAAAGGCTTAT 1314
Query 1318 CTTGGCCAGACAGAGGATTCAGTGGTCATTGACTTTAATTATTACCGAGCGGATGATGAG 1377
|||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||
Sbjct 1315 CTTGGCCAGACAGAGGATTCTGTGGTTATTGACTTTAATTATTACCGAGCGGACGATGAG 1374
Query 1378 TTGACCCCGAGGTTGAACCAAGATGTGATGGAGGAGATGGAGCAGATGGCGTTTGTCAAA 1437
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1375 TTGACCCCGAGGTTGAACCAAGATGTGATGGAGGAGATGGAGCAGATGGCGTTTGTTAAA 1434
Query 1438 CACGGCGCAAAGCCGCATTGGGGGAAGAATAGGAAAGTGGGTTTCTTCGGCGTGAAGCAA 1497
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 1435 CACGGCGCAAAGCCGCATTGGGGGAAGAATAGGAAAGTGGGTTTCTTTGGCGTGAAGAAA 1494
Query 1498 AAGATTGGACCTAACTTTGATAAATTCTTGGAAGTAAAGAACAAGTTAGATCCTAAGAAG 1557
||| |||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 1495 AAGCTTGGACCTAATTTTGATAGATTCTTGGAAGTGAAGAACAAGTTAGATCCTAAGAAG 1554
Query 1558 ATGTTCTCTAGTGAATGGTCTGATGAGATTCTCTTAGGAACAGAAGCTTCCAAGTATGAC 1617
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 1555 ATGTTCTCTAGTGAATGGTCTGATGAGATTCTCTTTGGAATAGAAGCTTCCAAGTATGAC 1614
Query 1618 GGATGTGCCTTGGAAGGAAATTGTGTGTGTTCAGAAGAAAGACATTGTAACCCTTCCAAA 1677
||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 1615 GGATGTGCCCTGGAAGGAAATTGTGTGTGTTCAGAAGACAGACATTGTAGCCCTTCCAAA 1674
Query 1678 GGTTACTTTTGTAAGGAAGGCCTTGTTTATACACAAGCTAGGGTTTGCAGATTCTCGCCA 1737
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1675 GGTTACTTTTGTAAGCAAGGCCTTGTTTATACACAAGCTAGGGTTTGCAGATTCTCTCCA 1734
Query 1738 GCTCAAGTTATAGTGATGTAA 1758
||||||||| |||||| ||||
Sbjct 1735 GCTCAAGTTCTAGTGACGTAA 1755
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65972304340
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5