BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G11550.1
Length=1238
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487992 jgi|Araly1|487992|fgenesh2_kg.6__1126__AT5G11550.1 1690 0.0
> Ahg487992 jgi|Araly1|487992|fgenesh2_kg.6__1126__AT5G11550.1
Length=1225
Score = 1690 bits (915), Expect = 0.0
Identities = 1144/1249 (92%), Gaps = 38/1249 (3%)
Strand=Plus/Plus
Query 1 GGTTCGAATCAATTATTTTCTTCCTA-TTTAAAACAGAGACGCTTCCCTTCACTTCACTC 59
||| |||| |||| |||||| ||||| ||||||| |||||||||||||||||||||||||
Sbjct 1 GGTGCGAACCAATAATTTTCCTCCTATTTTAAAA-AGAGACGCTTCCCTTCACTTCACTC 59
Query 60 CACTTCACTTGAAAGTCCCACACAGTCTCCCTAGTGAGCGATGATGAAAGCAAACCAGAA 119
|||||||||| | | | || | || ||||||||||||||||||||||||||||
Sbjct 60 CACTTCACTT---A-----A-A-AG--T-CC-AGTGAGCGATGATGAAAGCAAACCAGAA 105
Query 120 ACCGAAACCCCACGCGCCACCGCGTCCTCTCTTCTCCTGTGGCTTCTTCCGCCGCTGCAC 179
||||||||| |||||||| || |||||||||||||| |||||||||||||||||||||||
Sbjct 106 ACCGAAACCACACGCGCCGCCACGTCCTCTCTTCTCATGTGGCTTCTTCCGCCGCTGCAC 165
Query 180 ACAATCCGTCCTCAGCCCAACCTCTCCTCACCAGCAGCAACCTCGCCGTAAAGCCACCAC 239
||| ||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 166 ACAGTCCGTACTCAGTCCAACCTCTCCTCACCAGCAGCAACCTCGCCGTAAACCCACCAC 225
Query 240 CACTTCCTCCTCATCTTCCTCCTCCTCAACCTCAACTTCCCAAAGCTTCACTCAATGGCG 299
||| || ||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 226 CACATCATCCTCCTCTTCTTCCTCCTCAACCTCAACTTCCCAAAGCTTCACTCAATGGCG 285
Query 300 CTTtcctcatcatcttgatcaaactccatccaccgctcctcctcctcctcatccacctcc 359
||| |||||||| ||||||||||||||||||||||||||||| ||| | | |||||| ||
Sbjct 286 CTTCCCTCATCACCTTGATCAAACTCCATCCACCGCTCCTCCACCT-C-C-TCCACCACC 342
Query 360 tccaccaccgcctcttccggtcaccaccactctccaAGAAACCTTCCAGATCGCAGAGCT 419
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 343 TCCACCTCCGCCTCTTCCGGTAACCACCACTCTCCAAGAAACCTTCCAGATCGCAGAGCT 402
Query 420 TCACCTCACATCCGTCTCTGAATCCGACAAGCTCCTCGCTCTACAGCTACTCGAGCGGGT 479
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 403 TCACCTCACATCCGTCTCTGAATCCGACAAGCTCCTCGCTCTTCAGCTACTCGAGCGTGT 462
Query 480 AGTCGTACCTGACCCGCCATCTGATCCGACTTGTCCACCGGGTCTCATGCGAGGTCTCGT 539
|||||||| |||||||| ||||||||||||||||||||||||||||||||| | |||||
Sbjct 463 CGTCGTACCCGACCCGCCTTCTGATCCGACTTGTCCACCGGGTCTCATGCGATGCCTCGT 522
Query 540 CTCTTGCCTTCGTAGCAACAACAAGATCGTAACGGCAAAATACGTCACCAAGATCCTACT 599
||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||
Sbjct 523 CTCTTGCCTTCGTAGCAACAACAAGATCGTAACCGCCAAATACGTCACCAAGATCCTCCT 582
Query 600 CGCTCTCTGCCTCGCCGAAGGAAACCGCCACGTGGCGGTCGAGGCTGGAGCCGC-ACGAG 658
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 583 CGCTCTCTGCCTCGCCGAAGGAAACCGCCACGTGGCGGTCGAGGCTGGAGCCGCCA-GAG 641
Query 659 CGGTGGTGGAAACAGCGGCAGGACTAGAGATCTCAGCGGTGGAGCGAGCCTTAGCTGCTC 718
||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||
Sbjct 642 CGGTGGTGGAAACAGCGGCGGGGCTAGAGATCTCAGCGGTGGAACGAGCCTTAGCTGCG- 700
Query 719 TT-GAGCTAATGTGTACAACGGCAGAAGGAGCGGCGGAGGTTCGCGCTCACGCGATGACG 777
|| ||||| ||||| || || || | |||||| ||||||||||| |||||||||||||||
Sbjct 701 TTAGAGCTCATGTGCACGACAGCGGGAGGAGCTGCGGAGGTTCGTGCTCACGCGATGACG 760
Query 778 GTGCCGGCGATGGTAGCGGTGATGGCGAGATTGGCTGGTAGAGGGA-GAGAATACGCCAT 836
|||||||| ||||| ||||||||||||||| | || || || |||| |||||||||| ||
Sbjct 761 GTGCCGGCAATGGTGGCGGTGATGGCGAGACTAGCAGGGAG-GGGAAGAGAATACGCTAT 819
Query 837 AAGCATCCTTTCCGTGGTCTACGGGAAAGGCGGCGAAGGAGGGGATTCCGGCGAGGAAAT 896
|||||| |||||| | |||||||||||||| |||| |||||| |||||||||||||| ||
Sbjct 820 AAGCATACTTTCCATAGTCTACGGGAAAGGAGGCGGAGGAGGAGATTCCGGCGAGGAGAT 879
Query 897 CGCGGTGGCGCCGGCGGAAGAAGTGGCTCGGGCGGTGGCGTTGGCGCTGGAAGGAGAGTG 956
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 880 CGCGGTGGCGCCGGCGGAAGAGGTGGCTCGGGCGGTGGCGTTGGCGCTGGAAGGAGAGTG 939
Query 957 TACGGCGAGAGGAAAAAGAAAAGGGGCCCAACTATTGAAGACACTAGAGGAATATGGACG 1016
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 940 TACGGCGAGAGGAAGAAGAAAAGGGGCCCAACTATTGAAGACACTGGAGGAATATGGACG 999
Query 1017 GTTGGATCTGAGTCAGAATGGGACCTGAGAAA-TGAAATCTAACGGTTGCA-ATTATGTC 1074
|||||||||||||||||||||||| ||||||| |||||||||||||| | | ||||||||
Sbjct 1000 GTTGGATCTGAGTCAGAATGGGACATGAGAAAATGAAATCTAACGGTGG-AGATTATGTC 1058
Query 1075 AGATGAAAAATAATAAATCTGAAAGCTAGTTTTATTTTGGGGTCACGGGCTTGTTGTTCT 1134
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 1059 AGATGAAAAATAATAAATCTGAAAGCTAGTTTT-TTT-GGGGTCACGGGCTTGTTGTTCT 1116
Query 1135 TTTGTTAAAGATGTGTGGGCCTTCGTCTCTGTCTCCCCTATCT-TT------GTATATAT 1187
||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1117 TTTGTTAAAGATGTGTGGGCCTTCGTCTCTGTCTCCCCTATCTATTAATTATGTATATAT 1176
Query 1188 TACATTA-TAATCCCTTTTAATTATTAATGTCAAAAATTATTAGGTTTT 1235
||||||| | ||||||||||||||| ||||||||| ||||||||||||
Sbjct 1177 TACATTAATTGTCCCTTTTAATTATTTATGTCAAAATTTATTAGGTTTT 1225
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46243098321
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5