BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G11570.1 Length=1446 Score E Sequences producing significant alignments: (Bits) Value Ahg940633 jgi|Araly1|940633|scaffold_601177.1 2156 0.0 > Ahg940633 jgi|Araly1|940633|scaffold_601177.1 Length=1488 Score = 2156 bits (1167), Expect = 0.0 Identities = 1360/1453 (94%), Gaps = 14/1453 (1%) Strand=Plus/Plus Query 1 ATGGATCAAGAAGCTCTTCTCGTCGGAAGAACT-CTTCTGAAGCGCGGTATTCCGACCAT 59 ||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||| Sbjct 23 ATGGATCAAGAAGCTCTTCTCGTCGGAAGAACTACTTC-AAAACGCGGTATTCCGACCAT 81 Query 60 TCCTTTCATTCTAGCAAGTCAGGCTTTGGAGAAACTTGCATATTTTGGTTTGGTACCGAA 119 |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 82 TCCTTTCATTCTAGCAAGTCAGGCGTTGGAGAAACTTGCATATTTTGGATTGGTACCGAA 141 Query 120 CATGATACTCTTCTTGACGGTGGAATACGGCATGGGAACAGCGGAAGCGGCCAACATCCT 179 ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 142 TATGATACTCTTCTTGACGGTGGAATACGGTATGGGAACAGCCGAAGCGGCCAACATCCT 201 Query 180 TTTCCTCTGGTCTGCCGCCACCAATTTCTTCCCTCTTGTTGGTGCTTTTATCGCTGATTC 239 ||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||| Sbjct 202 ATTCCTCTGGTCCGCCGCCACCAATTTCTTCCCTCTTGTGGGTGCTTTTATTGCTGATTC 261 Query 240 TTACACCGGTCGGTTTCCTCTGATCGGGTTTGGATCCTCCATCAGCCTTACGGGAATGGT 299 |||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||| Sbjct 262 TTACACGGGTCGGTTTCCTCTGATCGGGTTTGGATCCTCTATCAGCCTTATGGGAATGGT 321 Query 300 TTTGTTATGGCTGACAACAATAATTCGACCAGAATGCGATAAATTAACAAACGTGTGCCA 359 ||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| Sbjct 322 TTTATTATGGCTGACAACACTAATTCGACCAGAATGCGATAAATTAACGAACGTGTGCCA 381 Query 360 ACCCACCACACTGCTCAAAAGTGTTCTTCTATATTCCTTTTTTGCCCTCACCGCCATTGG 419 |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| Sbjct 382 ACCCACCACACTGCTCAAAAGTCTTCTCCTATATTCCTTTTTTGCCCTCACCGCCATTGG 441 Query 420 TGCCGGCGGCGTTAGATCCTCCTGCTTAGCCTTCGCTGCCGACCAGCTCCAACCTAATCA 479 |||||||| || || |||||||||||||||||||| || |||||||| ||||||||||| Sbjct 442 CGCCGGCGGAGTCAGGTCCTCCTGCTTAGCCTTCGCCGCTGACCAGCTTCAACCTAATCA 501 Query 480 GACATCACGTGTCACCACATCATCCCTAGAAACGCTCTTCAACTGGTACTACTTCTCCGT 539 ||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||| Sbjct 502 GACATCACGTGTCGCCATATCAGCCCTAGAAACGCTCTTCAACTGGTACTACTTCTCCGT 561 Query 540 CATGGTCGCATGCTTTCTTTCTCAGTCTTTGCTCGTCTTCGTTCAGACAACGTATGGTTG 599 |||| | |||||||||||||||||||| ||||||||||||||||||||||| |||||||| Sbjct 562 CATGCTAGCATGCTTTCTTTCTCAGTCGTTGCTCGTCTTCGTTCAGACAACATATGGTTG 621 Query 600 GCAGATCGGTTTTGGAGTTTCTGTCGCTGCCATGGCTCTATCGGTCGCTTTGTTCTTCGC 659 | |||| |||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 622 GAAGATTGGTTTTGGAGTTTCTGTCGCTGCCATGGCTCTATCGGTCGCTTTGTTCTTTGC 681 Query 660 GGCGTCTCCGTACTATGTAAGGTTTCAGAAACCGA--CACGG-AACTCAAGGAATCCATG 716 ||| ||||| ||||||||||||||| | | ||| | ||| | ||| |||||||||| Sbjct 682 GGCTTCTCCATACTATGTAAGGTTT-A-AGTGCGAGTC-CGGCGAGTCACGGAATCCATG 738 Query 717 GAAGCTATGTAGGGTGCAACAAGTAGAAGATCTTAAATCTCTCATCAATGTCATACCAAT 776 ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| || Sbjct 739 GAAGCTATGTAGGGTTCAACAAGTAGAAGATCTTAAATCTCTCATCAATGTCCTACCCAT 798 Query 777 TTGGTCAACAGGGATCATCTTGTCACTTGTCACGGCTTGCCAAGTCTCCTTCATAGTCCT 836 |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 799 ATGGTCAACGGGGATCATCTTGTCACTTGTCACAGCTTGCCAAGTCTCCTTCATAGTCCT 858 Query 837 TCAAGCTAAGACCATGGATCGCCACACCTTCATTCAGGGTTTCGAGATTCCTCCAGGCTC 896 |||||| ||| ||||||||||||||||||| ||||||||||| |||||||| |||||||| Sbjct 859 TCAAGCCAAGGCCATGGATCGCCACACCTTTATTCAGGGTTTTGAGATTCCCCCAGGCTC 918 Query 897 TTACGGCATTTTCTTGGTCATCTCCTTTTTGCTCTTCCTTGGTCTTTACGATCTTGTTAT 956 |||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||| Sbjct 919 TTACGGCATTTTCTTGGTCATCTCCTTTGTGCTGTTCCTTGGTCTTTATGATCTTGTTAT 978 Query 957 CGTCCCATTACTTTCTTGGGCTCTAAG-AGAACCCTTTCGATTGGGAGTTATGGTGAGAA 1015 ||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||| Sbjct 979 CGTCCCATTACTTTCTTGGGCTCTAAGAAG-GCCCTTTCGATTGGGAGTTATGGCGAGAA 1037 Query 1016 TGTGG-GCTGGGTATGTAATATCGGTTTTGTGCATCTCCGCTCTTGCGGCTACGGAGTAC 1074 || || ||||||||||||||||||||| ||||||||||| ||||||||||| |||||||| Sbjct 1038 TG-GGAGCTGGGTATGTAATATCGGTTATGTGCATCTCCACTCTTGCGGCTGCGGAGTAC 1096 Query 1075 GCGAGGAGAAAAA-CAGCGAGAGACGAGAGTGGTACCAAGTTGTCGGCGATGTGGCTATT 1133 || |||| ||||| | || ||||||||||||||||||| |||||| || ||||||||||| Sbjct 1097 GCCAGGAAAAAAATC-GCTAGAGACGAGAGTGGTACCATGTTGTCTGCCATGTGGCTATT 1155 Query 1134 ACCGTACATGATATTAGGAGGCATTGCGGAAGCACTTAATACAATAGCACAGAACGAGTT 1193 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1156 ACCGTACATGATATTAGGAGGCATTGCGGAAGCACTTAATACAATAGCACAGAACGAGTT 1215 Query 1194 CTTCTACTCAGAACTTCCCAAAACCATGTCAAGCGTCGCCACCACACTCTCCAGTCTCAA 1253 ||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||| Sbjct 1216 CTTCTACTCTGAACTTCCCAAATCCATGTCAAGCGTCGCCACCACACTCTCCAGCCTCGG 1275 Query 1254 CATGGCCGCAGCAAGCCTCATCTCCTCCTGGATCATCACCATCGTTGACGTTACCACTTA 1313 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1276 CATGGCCGCAGCAAGCCTCATCTCCTCCTGGATCATCACCATCGTTGACGTCACCACTTA 1335 Query 1314 CGGGAGCTGGATCACAGAGAATATAGACGAGGGACACTTGGACTATTACTACTGGCTCTT 1373 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1336 CGGGAGCTGGATCACAGAGAATATAGACGAGGGACACTTGGACTATTACTACTGGCTCTT 1395 Query 1374 GGTGGGATTATCTTTGCTGAATGTTTTGTATTTTGTGTGGTGTAAGAAATCTTATGGTAA 1433 ||| ||||||||| |||| |||||| |||||||||||||||||||||||||||||||||| Sbjct 1396 GGTAGGATTATCTGTGCTCAATGTTCTGTATTTTGTGTGGTGTAAGAAATCTTATGGTAA 1455 Query 1434 ATGTAGTATATAA 1446 ||||||||||||| Sbjct 1456 ATGTAGTATATAA 1468 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54088147900 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5