BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G11570.1
Length=1446
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940633 jgi|Araly1|940633|scaffold_601177.1 2156 0.0
> Ahg940633 jgi|Araly1|940633|scaffold_601177.1
Length=1488
Score = 2156 bits (1167), Expect = 0.0
Identities = 1360/1453 (94%), Gaps = 14/1453 (1%)
Strand=Plus/Plus
Query 1 ATGGATCAAGAAGCTCTTCTCGTCGGAAGAACT-CTTCTGAAGCGCGGTATTCCGACCAT 59
||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||
Sbjct 23 ATGGATCAAGAAGCTCTTCTCGTCGGAAGAACTACTTC-AAAACGCGGTATTCCGACCAT 81
Query 60 TCCTTTCATTCTAGCAAGTCAGGCTTTGGAGAAACTTGCATATTTTGGTTTGGTACCGAA 119
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 82 TCCTTTCATTCTAGCAAGTCAGGCGTTGGAGAAACTTGCATATTTTGGATTGGTACCGAA 141
Query 120 CATGATACTCTTCTTGACGGTGGAATACGGCATGGGAACAGCGGAAGCGGCCAACATCCT 179
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 142 TATGATACTCTTCTTGACGGTGGAATACGGTATGGGAACAGCCGAAGCGGCCAACATCCT 201
Query 180 TTTCCTCTGGTCTGCCGCCACCAATTTCTTCCCTCTTGTTGGTGCTTTTATCGCTGATTC 239
||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 202 ATTCCTCTGGTCCGCCGCCACCAATTTCTTCCCTCTTGTGGGTGCTTTTATTGCTGATTC 261
Query 240 TTACACCGGTCGGTTTCCTCTGATCGGGTTTGGATCCTCCATCAGCCTTACGGGAATGGT 299
|||||| |||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 262 TTACACGGGTCGGTTTCCTCTGATCGGGTTTGGATCCTCTATCAGCCTTATGGGAATGGT 321
Query 300 TTTGTTATGGCTGACAACAATAATTCGACCAGAATGCGATAAATTAACAAACGTGTGCCA 359
||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 322 TTTATTATGGCTGACAACACTAATTCGACCAGAATGCGATAAATTAACGAACGTGTGCCA 381
Query 360 ACCCACCACACTGCTCAAAAGTGTTCTTCTATATTCCTTTTTTGCCCTCACCGCCATTGG 419
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 382 ACCCACCACACTGCTCAAAAGTCTTCTCCTATATTCCTTTTTTGCCCTCACCGCCATTGG 441
Query 420 TGCCGGCGGCGTTAGATCCTCCTGCTTAGCCTTCGCTGCCGACCAGCTCCAACCTAATCA 479
|||||||| || || |||||||||||||||||||| || |||||||| |||||||||||
Sbjct 442 CGCCGGCGGAGTCAGGTCCTCCTGCTTAGCCTTCGCCGCTGACCAGCTTCAACCTAATCA 501
Query 480 GACATCACGTGTCACCACATCATCCCTAGAAACGCTCTTCAACTGGTACTACTTCTCCGT 539
||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 502 GACATCACGTGTCGCCATATCAGCCCTAGAAACGCTCTTCAACTGGTACTACTTCTCCGT 561
Query 540 CATGGTCGCATGCTTTCTTTCTCAGTCTTTGCTCGTCTTCGTTCAGACAACGTATGGTTG 599
|||| | |||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 562 CATGCTAGCATGCTTTCTTTCTCAGTCGTTGCTCGTCTTCGTTCAGACAACATATGGTTG 621
Query 600 GCAGATCGGTTTTGGAGTTTCTGTCGCTGCCATGGCTCTATCGGTCGCTTTGTTCTTCGC 659
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 622 GAAGATTGGTTTTGGAGTTTCTGTCGCTGCCATGGCTCTATCGGTCGCTTTGTTCTTTGC 681
Query 660 GGCGTCTCCGTACTATGTAAGGTTTCAGAAACCGA--CACGG-AACTCAAGGAATCCATG 716
||| ||||| ||||||||||||||| | | ||| | ||| | ||| ||||||||||
Sbjct 682 GGCTTCTCCATACTATGTAAGGTTT-A-AGTGCGAGTC-CGGCGAGTCACGGAATCCATG 738
Query 717 GAAGCTATGTAGGGTGCAACAAGTAGAAGATCTTAAATCTCTCATCAATGTCATACCAAT 776
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 739 GAAGCTATGTAGGGTTCAACAAGTAGAAGATCTTAAATCTCTCATCAATGTCCTACCCAT 798
Query 777 TTGGTCAACAGGGATCATCTTGTCACTTGTCACGGCTTGCCAAGTCTCCTTCATAGTCCT 836
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 799 ATGGTCAACGGGGATCATCTTGTCACTTGTCACAGCTTGCCAAGTCTCCTTCATAGTCCT 858
Query 837 TCAAGCTAAGACCATGGATCGCCACACCTTCATTCAGGGTTTCGAGATTCCTCCAGGCTC 896
|||||| ||| ||||||||||||||||||| ||||||||||| |||||||| ||||||||
Sbjct 859 TCAAGCCAAGGCCATGGATCGCCACACCTTTATTCAGGGTTTTGAGATTCCCCCAGGCTC 918
Query 897 TTACGGCATTTTCTTGGTCATCTCCTTTTTGCTCTTCCTTGGTCTTTACGATCTTGTTAT 956
|||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||
Sbjct 919 TTACGGCATTTTCTTGGTCATCTCCTTTGTGCTGTTCCTTGGTCTTTATGATCTTGTTAT 978
Query 957 CGTCCCATTACTTTCTTGGGCTCTAAG-AGAACCCTTTCGATTGGGAGTTATGGTGAGAA 1015
||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||
Sbjct 979 CGTCCCATTACTTTCTTGGGCTCTAAGAAG-GCCCTTTCGATTGGGAGTTATGGCGAGAA 1037
Query 1016 TGTGG-GCTGGGTATGTAATATCGGTTTTGTGCATCTCCGCTCTTGCGGCTACGGAGTAC 1074
|| || ||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||
Sbjct 1038 TG-GGAGCTGGGTATGTAATATCGGTTATGTGCATCTCCACTCTTGCGGCTGCGGAGTAC 1096
Query 1075 GCGAGGAGAAAAA-CAGCGAGAGACGAGAGTGGTACCAAGTTGTCGGCGATGTGGCTATT 1133
|| |||| ||||| | || ||||||||||||||||||| |||||| || |||||||||||
Sbjct 1097 GCCAGGAAAAAAATC-GCTAGAGACGAGAGTGGTACCATGTTGTCTGCCATGTGGCTATT 1155
Query 1134 ACCGTACATGATATTAGGAGGCATTGCGGAAGCACTTAATACAATAGCACAGAACGAGTT 1193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1156 ACCGTACATGATATTAGGAGGCATTGCGGAAGCACTTAATACAATAGCACAGAACGAGTT 1215
Query 1194 CTTCTACTCAGAACTTCCCAAAACCATGTCAAGCGTCGCCACCACACTCTCCAGTCTCAA 1253
||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 1216 CTTCTACTCTGAACTTCCCAAATCCATGTCAAGCGTCGCCACCACACTCTCCAGCCTCGG 1275
Query 1254 CATGGCCGCAGCAAGCCTCATCTCCTCCTGGATCATCACCATCGTTGACGTTACCACTTA 1313
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1276 CATGGCCGCAGCAAGCCTCATCTCCTCCTGGATCATCACCATCGTTGACGTCACCACTTA 1335
Query 1314 CGGGAGCTGGATCACAGAGAATATAGACGAGGGACACTTGGACTATTACTACTGGCTCTT 1373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1336 CGGGAGCTGGATCACAGAGAATATAGACGAGGGACACTTGGACTATTACTACTGGCTCTT 1395
Query 1374 GGTGGGATTATCTTTGCTGAATGTTTTGTATTTTGTGTGGTGTAAGAAATCTTATGGTAA 1433
||| ||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 1396 GGTAGGATTATCTGTGCTCAATGTTCTGTATTTTGTGTGGTGTAAGAAATCTTATGGTAA 1455
Query 1434 ATGTAGTATATAA 1446
|||||||||||||
Sbjct 1456 ATGTAGTATATAA 1468
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54088147900
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5