BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G11580.1
Length=1974
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487995 jgi|Araly1|487995|fgenesh2_kg.6__1129__AT5G11580.1 2660 0.0
> Ahg487995 jgi|Araly1|487995|fgenesh2_kg.6__1129__AT5G11580.1
Length=1789
Score = 2660 bits (1440), Expect = 0.0
Identities = 1629/1720 (95%), Gaps = 13/1720 (1%)
Strand=Plus/Plus
Query 59 ATTTTAGAAAGCAACTGAGGACGAACCTTATCCGTCACAGTGGCAATGGAGGACAAATCA 118
|||||||||||||| |||| ||||||||||||||| |||| ||||||||||||||||||
Sbjct 1 ATTTTAGAAAGCAATTGAGCACGAACCTTATCCGTTACAGCGGCAATGGAGGACAAATCG 60
Query 119 CCGACGTTACTGATTTCTGAAGATTTATCCCGGAAAATAATCTCTCTTGCCGCCGGTGAA 178
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTGACGTTACCGATTTCTGAGGATTTATCCCGGAAAATAATCTCTCTTGCCGCCGGTGAA 120
Query 179 GCTCATACAATCGCTCTGACCGGCGATGGATGTGTTTACTCATGGGGAAGAGGAATGTTT 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GCTCATACAATCGCTCTGACCGGCGATGGATGTGTTTACTCATGGGGAAGAGGAATGTTT 180
Query 239 GGCCGTCTCGGTACGGGTAAGGAGTCGGACGAGCTTGTTCCAGTTCTAGTCGAGTTC--- 295
|||||||| ||||| |||||||| |||||||||||||||||||||| |||||||||
Sbjct 181 GGCCGTCTTGGTACTGGTAAGGAATCGGACGAGCTTGTTCCAGTTCGAGTCGAGTTGGAG 240
Query 296 ---CCAAATCAAGCGGAAGGAGATCGGATTCGAATCGTTGGTGTTGCTGCTGGTGCTTAT 352
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 241 TTTCCAAATCAAGCGGAAGGAGATCGGGCTCGAATCGTTGGTATTGCTGCTGGTGCTTAT 300
Query 353 CACAGTCTCGCTGTCTCAGATGATGGCTCGGTTTGGTGTTGGGGTTACAACATTTATGGC 412
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 301 CACAGTCTCGCTGTCTCAGATGATGGCTCGGTTTGGTGTTGGGGTTATAACATTTATGGC 360
Query 413 CAACTTGGTTTTGATGGGGAAAACTCCTTGGCACCATGCTTGATCAAAAATTTGTTTGAA 472
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 361 CAACTTGGTTTTGATGGGGAAAACTCTTTGGCACCATGCTTGATAAAAAATTTGTTTGAA 420
Query 473 CGAGAAACATCTAGTTCTTCTCTAAATGATTCAGGTAGAGAAGTTGGATCAGATTTAAAG 532
| || | |||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 421 CAAGGAGCATCTAGTTCTTCTCTAAATGATTCAGGTAGAGAAGCTAGATCAGATTTAAAG 480
Query 533 GTTTGTACTGTAAAGGCTGGCTCCATGATGTCTCTTGCCATTGATAATGTCGGAGGTCTT 592
|||||| |||| ||||| || ||||||||||| |||||||||||||||||||||||||||
Sbjct 481 GTTTGTGCTGTTAAGGCCGGATCCATGATGTCGCTTGCCATTGATAATGTCGGAGGTCTT 540
Query 593 TGGATGTGGGGCAATGTTCCTCCACAAGACAGTGAACCTGACCCTCGTTTGTCTTTTACT 652
||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 541 TGGATGTGGGGCAATGTTCCTCCACAAAACAGTGAACCTGAACCTCGTTTGTCTTTTACA 600
Query 653 AGCATCCCGATTCCATTTCCTATACTCGACTTCCATGGCCGGACGGTTTTGAAGGTAGCA 712
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 601 AGCATCCCGATTCCATTTCCTATACTCGACTTCCATGGACGGACGGTTTTGAAGGTAGCA 660
Query 713 TGTGGGGATGAACACGTTGTTGCCCTCGTTGGTCCTGGGGATATCCACAAAGACAACAGT 772
||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 661 TGTGGGGATGAACACGTTGTTGCCCTCGTTGCACCAGGGGATATCCACAAAGACAACAGT 720
Query 773 TATGATGTATCCGTGCTGTATTCTTGGGGAAATAATCATCATGGCCAGTTAGGACTTGGA 832
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 721 TATGATGTATCAGTGCTGTATTCTTGGGGAAATAATCATCATGGCCAGTTAGGGCTTGGG 780
Query 833 GATGGAG-AGAGCCGTGCAAGGCCTCAGACTGTGGAGACATTTAACCAGAAGTCGGGTCT 891
||| || |||||||||| |||||||||| ||||||||||||||||||||| ||||||||
Sbjct 781 GATA-AGGAGAGCCGTGCGAGGCCTCAGATTGTGGAGACATTTAACCAGAACTCGGGTCT 839
Query 892 TACAGTCTACGACATAGCTTGTGGTGCTCATCACACAGCTCTTCTCACCTACAGGAAGGA 951
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 840 TACAGTCTACGACATAGCTTGTGGTGCTCATCACACAGCTCTTCTCACCTACAAGAAGGA 899
Query 952 GACACCTAAAGGACCAAGCATTTGCTGGACGTTCGGCTTTGGAGAAAATGGTCAGCTTGG 1011
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GACACAGAAAGGACCAAGCATTTGCTGGACGTTCGGCTTTGGAGAAAATGGTCAGCTTGG 959
Query 1012 GCATAGAAGTAACAAGAGCTCATCGCTTCCAGAGCCAGTTTCAGATCTCCCAGAACACGC 1071
||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 960 GCATAGAAGTAACAAAAGCTCATCGATTCCAGAGCCAGTTTCAGAGCTCCCAGAACACGC 1019
Query 1072 TTACTTAGTTTCTGTAGACTGTGGATTATTCCACACAAGCGTGGTGTCCTCTGAGGGATA 1131
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1020 TTACTTAGTTTCTGTAGACTGTGGACTATTCCACACAAGCGTGGTGTCCTCTGAGGGATA 1079
Query 1132 CGTGTGGTCGTGGGGAATGGAAAGAGGATTAGGATTATGCCCCGATGTCAACTTCACAGA 1191
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1080 CGTGTGGTCGTGGGGAATGGAGAGAGGATTAGGATTATGCCCCGATGTCAACTTCACAGA 1139
Query 1192 GGTGGAAGCAGGAGATGATAGTGTACCAAGAAAGATTTCAGGTGGGTCGTCAAGATTTCG 1251
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 1140 GGTGGAAGCAGGAGATGATAGTGTACCAAGAAAGATTTCAGCTGGGTC---AAGATTTCG 1196
Query 1252 TGACCCGGTTCAGGTTTCTTGCGGGGCTGCACATACAGTTCTTGTGGTAGATGGTGGTTA 1311
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||
Sbjct 1197 TGACCCGGTTCAGGTTTCTTGCGGGGCAGCACATACAGTTCTTGTGGCAGATGGTGGGTA 1256
Query 1312 CAAGCTGTGGTCTTGGGGAAGAGGAAGAAATGGAGTGCTCGGAACTGGGAATGTTAGCGA 1371
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1257 CAAGCTGTGGTCTTGGGGAAGAGGAAGAAATGGAGTGCTCGGGACTGGGAATGTTAGCGA 1316
Query 1372 CTGTTATGTCCCTACTCTCGTCTTCTGGCCGAATGAGCTGAAACCTGAGAAAGAAGAAGT 1431
||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1317 CTGTTATGTCCCTACTCACGTCTTCTGGCCAAATGAGCTGAAACCAGAGAAAGAAGAAGT 1376
Query 1432 ACCCGATGATGGA-AAAAGCGCATCAACTGAGGAGATTAAACGGCTAGAATCAAAACTAA 1490
| | |||| || | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 AGCTGATGCTG-ACAAAAGCGCATCAACTGAGGAGATTAAACGGCTAGAATCAAAACTAA 1435
Query 1491 TGGTGATGGAAAGATATGCAAGCATACTTCATGGATCCATATTCGGAAAACCTTTTAATG 1550
||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||
Sbjct 1436 TGGTGATGGAAAGATATGCAAGCATACTTCATGGATCCATATTTGGGAAACCTTTCAATG 1495
Query 1551 AAGAGGAAGATATCCCATATTCATTACGGGTTTCTGGGTATTTCGATATGGGAAAAGAGT 1610
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1496 AAGAGGAAGATATCCCGTATTCATTACGGGTTTCTGGGTATTTCGATATGGGCAAAGAGT 1555
Query 1611 GGGGAGAGATGCTGGAGAGTGCTGATAAGAGTCAGCTGATGAGGCTTCAAGCTTTCTATG 1670
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1556 GGGGAGAGATGCTGGAGAGTGCAGATAAGAGTCAGCTTATGAGGCTTCAAGCTTTCTATG 1615
Query 1671 AAGACATGATTGGTAGAGTTAAGGACAAGGTGTTGCAGAGAAGGATTCAGGAGATTATGA 1730
|||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 1616 AAGACATGATTGTTAGAGTAAAGGACAAGGTGCTGCAGAGAAGGATTCAGGAGATTATGA 1675
Query 1731 AAGATTGTCTTCAGTCTTCAGCCCCTAAATACTAGTATCA 1770
|||||||| |||| |||||||| |||||| |||| |||||
Sbjct 1676 AAGATTGTTTTCAATCTTCAGCACCTAAACACTAATATCA 1715
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74199797260
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5