BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G11590.1
Length=1193
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487996 jgi|Araly1|487996|fgenesh2_kg.6__1130__AT5G11590.1 1254 0.0
Ahg493200 jgi|Araly1|493200|fgenesh2_kg.7__2633__AT4G16750.1 126 3e-28
> Ahg487996 jgi|Araly1|487996|fgenesh2_kg.6__1130__AT5G11590.1
Length=1022
Score = 1254 bits (679), Expect = 0.0
Identities = 800/857 (93%), Gaps = 13/857 (2%)
Strand=Plus/Plus
Query 140 CTTTTTATTTGCATTAATCTCGGGATCCGAATCGAAAAAAGCAATCAGAATAATAGACTT 199
|||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 73 CTTTTTATTTGCATAAATCTTGGGATCCGAATCGTAAAAAGCAATCAGAATAATAGACTT 132
Query 200 GTACGATACTTGTGCCTAAGCTAACACAATGGCAGAGGAATACTACAGCCTCCGCTCGGA 259
||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 133 GTACGATTCTTGTGCCTAAGCTAA-ACAATGGCAGAGGAATACTACAACCTCCGCTCGGA 191
Query 260 GAGAGTAACTCAGCTTCTTGTCCCTAACTCGGAGTCTGACTCAGTGAGTGACAAAAGCAA 319
|||||||||||||| |||||||| |||||||||||| |||||||||||| | ||||||||
Sbjct 192 GAGAGTAACTCAGCATCTTGTCCATAACTCGGAGTCAGACTCAGTGAGTCAGAAAAGCAA 251
Query 320 AGCTGAGCAAAGCGAG---AAGAAGACTAAACGTGGGAGAGACTCCGGTAAACACCCTGT 376
||| |||||||||||| |||||||| ||||||| ||||||||||||||||||||| ||
Sbjct 252 AGCAGAGCAAAGCGAGAATAAGAAGACGAAACGTGTGAGAGACTCCGGTAAACACCCAGT 311
Query 377 TTATCGCGGAGTAAGGATGAGGAACTGGGGAAAATGGGTGTCGGAGATTCGTGAGCCGAG 436
||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 312 TTACCGTGGAGTAAGAATGAGGAACTGGGGAAAATGGGTGTCGGAGATTCGTGAGCCGAG 371
Query 437 GAAGAAATCACGTATTTGGCTGGGAACTTTCCCGACGCCGGAGATGGCGGCGCGTGCACA 496
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 372 GAAGAAATCACGTATTTGGCTCGGAACTTTCCCGACGCCGGAGATGGCGGCGCGTGCACA 431
Query 497 CGACGTGGCGGCTCTGAGCATTAAAGGAACGGCCGCTATACTAAACTTCCCTGAACTCGC 556
||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||
Sbjct 432 CGACGTGGCGGCTCTGAGCATAAAAGGAACCTCCGCTATACTAAACTTCCCTGAACTTGC 491
Query 557 TGACTCATTCCCTCGACCCGTTTCATTAAGCCCTCGAGACATTCAGACAGCAGCTCTTAA 616
||||||||| ||||||||||| || |||||||| ||||||||||||| |||||||||||
Sbjct 492 TGACTCATTTCCTCGACCCGTCTCGCTAAGCCCTAGAGACATTCAGACCGCAGCTCTTAA 551
Query 617 AGCAGCTCACATGGAACCGACGACGTCGTTTTCATCTTCCACGTCTTCGTCGTCGTCTTT 676
|||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 552 AGCAGCTCACATGGAACCGACGACGTCGTTTTCATCTTCCACATCGTCGTCGTCGTC--- 608
Query 677 GTCTTCTACGTCTTCGCTCGAGTCTCTTGTGTTGGTGATGGACCTCTCGAGGACTGAGTC 736
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 609 GTCTTCTACGTCTTCGCTTGAGTCTCTTGTGTTGGTGATGGACCTCTCGAGGACTGAGTC 668
Query 737 GGAGGAGCTCGGTGAGATTGTGGAGCTTCCAAGTCTCGGGGCGAGTTACGACGTCGACTC 796
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 669 GGAGGAGCTCGGTGAGATTGTGGAGCTGCCAAGTCTCGGAGCGAGTTACGACGTCGACTC 728
Query 797 GGCTAACCTTGGGAACGAGTTTGTCTTCTATGACTCAGTTGACTACTGTTTATATCCGCC 856
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 729 GGCTAACCTTGGGAACGAGTTTGTGTTCTATGACTCAGTGGACTACTGTTTATATCCGCC 788
Query 857 GCCGTGGGGACAGTCGTCCGAAGATAACTATGGTCACGGAATTAGCCCTAATTTTGGCCA 916
|||||||||||||||||| ||||||||||| ||| |||||||||||||| ||||||||||
Sbjct 789 GCCGTGGGGACAGTCGTCGGAAGATAACTACGGTTACGGAATTAGCCCTTATTTTGGCCA 848
Query 917 TGGCTTGTCATGGGATCTCTAACAGTTTATTTTGTATCATTACCATAAT---GTTTTGTT 973
||||||||| |||||||| |||||||||||||||||||||||| ||||| ||||||||
Sbjct 849 TGGCTTGTCGTGGGATCTTTAACAGTTTATTTTGTATCATTACTATAATAATGTTTTGTT 908
Query 974 TAAA-ACAGTTTATTTT 989
|| || |||| ||||
Sbjct 909 -AATCAC-GTTTTTTTT 923
Score = 130 bits (70), Expect = 3e-29
Identities = 103/117 (88%), Gaps = 9/117 (8%)
Strand=Plus/Plus
Query 1046 gttttttttttgagttttttggtgttagctaagaaaggttttttttttttttttttttGG 1105
||||||||||| ||||| || ||||||||| || |||||||||||||||||||
Sbjct 915 GTTTTTTTTTT---TTTTTAAGT-TTAGCTAAG-AA----TTTTTTTTTTTTTTTTTTGC 965
Query 1106 AGCGGGTGTGAGCTCCATAATGATACGTGTACAAAACTCTATTTGTGtttttttttt 1162
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 966 TGCGTGTGTGAGCTCCATAATGATACGTGTACAAAACTCTATTTGTGTTTTTTTTTT 1022
> Ahg493200 jgi|Araly1|493200|fgenesh2_kg.7__2633__AT4G16750.1
Length=834
Score = 126 bits (68), Expect = 3e-28
Identities = 152/191 (80%), Gaps = 11/191 (6%)
Strand=Plus/Plus
Query 380 TCGCGGAGTAAGGATGAGGA-ACTGGGGAAAATGGGTGTCGGAGATTCGTGAGCCGAGGA 438
||| || || || |||| || | ||||||||||||||||| || ||| | || || || |
Sbjct 215 TCGTGGGGTCAGAATGA-GACAATGGGGAAAATGGGTGTCTGAAATTAGAGAACCAAGAA 273
Query 439 AGAAATCACGTATTTGGCTGGGAACTTTCCCGACGCCGGAGATGGCGGCGCGTGCACACG 498
|||||||| | || ||||| || |||||| | ||||||||||||||||||||||||||||
Sbjct 274 AGAAATCAAGAATCTGGCTCGGCACTTTCTCAACGCCGGAGATGGCGGCGCGTGCACACG 333
Query 499 ACGTGGCGGCTCTGAGC-ATTAAAGGAACGGC-C-GCTATAC-TAAACTTCCCTGAACTC 554
||||||||||| | ||| || || || |||| | ||| || | || ||||| || |||
Sbjct 334 ACGTGGCGGCTTT-AGCCATCAAGGG--CGGCTCTGCTC-ACCTTAATTTCCCGGAGCTC 389
Query 555 GCTGACTCATT 565
||| || ||||
Sbjct 390 GCTTAC-CATT 399
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44527567056
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5