BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G11600.1
Length=974
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487997 jgi|Araly1|487997|fgenesh2_kg.6__1131__AT5G11600.1 739 0.0
> Ahg487997 jgi|Araly1|487997|fgenesh2_kg.6__1131__AT5G11600.1
Length=788
Score = 739 bits (400), Expect = 0.0
Identities = 439/458 (96%), Gaps = 1/458 (0%)
Strand=Plus/Plus
Query 381 GAAAGCGAAAACAACATCTGCAACAGTAAGCTTGGTGAAAGGGAAAGCGAAAAGAGAGAA 440
|||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||
Sbjct 331 GAAAGCGAAAACAACATCTGCAGCAGTGAGCTTGGCGAAAGGGAAAGCGAAAAGAGAGAA 390
Query 441 GAAGGTTTATTCATTAGCTGGACAAAAGTTTGATCCTCCTGAAGAGAGAGAGCCCTTGAG 500
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 391 GAAGGTTTATTCATTACCTGGACAAAAGTTTGATCCTCCTGAAGAGAGAGAGCCCTTGAG 450
Query 501 GATATTCTATGAATCCTTGTCGAAACAAATACCTGGGAGTGAAATGGCTGAGTTCTGGCT 560
||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||
Sbjct 451 GATATTCTATGAATCATTATCCAAACAAATACCTGGGAGTGAAATGGCTGAGTTCTGGCT 510
Query 561 TATGGAACATGGTATGTTGTCTCCCGAAAAGGCGAAGCGAGCCTTTGAGAAAAAGCAGAG 620
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 511 AATGGAACATGGTATGTTGTCTCCCGAAAAGGCGAAGCGAGCCTTTGAGAAAAAACAGAG 570
Query 621 AAAAATGAAGCAAATTCGAATGGGGACACCGAGTAAATCGGCACCAACGTTTTCTAGTAA 680
||| |||||||||||||||||||||||||||| |||| |||||||||||||||| |||||
Sbjct 571 AAAGATGAAGCAAATTCGAATGGGGACACCGATTAAACCGGCACCAACGTTTTCAAGTAA 630
Query 681 AGCGGAGAGTTCTCAAAGAACATCTGCATCCAAGAACAACGGTTTAGATGCGAGAAAGAA 740
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 631 AGCGGAGAGTTCTCAAAGAACATCTGCGTCCAAGAACAACGGTTTAGATGCGAGAAAGAA 690
Query 741 GAAGAAAGTCGTCgatgatgatgacgatgatgatgatgatTTCATCCTAAGCCACAAGAG 800
|||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 691 GAAGAAAGTCGTTGATGATGACGACGACGATGATGATGATTTCATCCTAAGCCACAAGAG 750
Query 801 AAGGAAAGTGTAAACCATACAAACTTGTTATTAG-GAA 837
||||||||||||||||||||||| |||||||||| |||
Sbjct 751 AAGGAAAGTGTAAACCATACAAAGTTGTTATTAGAGAA 788
Score = 532 bits (288), Expect = 1e-150
Identities = 348/377 (92%), Gaps = 3/377 (1%)
Strand=Plus/Plus
Query 16 GAATCATTGTCGGATTTTTCAAGC--AGAAAAAGTAGTTGAGCTGAACTTCAGGTTAATC 73
|||||||||||||||| ||| ||| ||||||| ||||||||||||| ||||||||||||
Sbjct 1 GAATCATTGTCGGATTCTTCGAGCAGAGAAAAATTAGTTGAGCTGAATTTCAGGTTAATC 60
Query 74 TGAGCTTTTTCATGGCGACACAGGAGAGACCTAGTTCAGCTAAGAGCGAGCCACGCGATG 133
||||| |||| ||||||||||||| |||| | ||||||||||||||||||||||||||||
Sbjct 61 TGAGC-TTTTGATGGCGACACAGGCGAGATCAAGTTCAGCTAAGAGCGAGCCACGCGATG 119
Query 134 CGTCTTCTTCTCTTTCTTCCAGAGTCAAGATCGATCCGTCTATTAAGGACAAAAAGAAGA 193
||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 120 GGTCTTCTTCTCTTTCTTCCAGAGTCAAGATCGATCCGTCCATTATGGACAAAAAGAAGA 179
Query 194 TCGCGACCTCTAGCAGACCGATCATGTCGGATTCTAAACCCAGATCCTCTGTTTCTACCG 253
||| |||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 180 TCGTGACCTCTAACAGACCGATCATGTCGGATTCCAAACCCAGATCCTCTGTTTCCACCG 239
Query 254 TCACGGCGAAATCCGAGGCAAAGCCCAAAGTACCTATAAATTCAGTGAAAACCATAGCAA 313
||||||||||| ||||||||||||||||||||||| |||||||||||||| ||| ||||
Sbjct 240 TCACGGCGAAAGCCGAGGCAAAGCCCAAAGTACCTGTAAATTCAGTGAAATCCACAGCAG 299
Query 314 CAACATCTGCAGCAGCGAGCTTGGTGAAAGGGAAAGCGCAAACAACATCTACAGTAGTGA 373
|||||||||||||||||||||||| ||||||||||||| ||||||||||| ||| |||||
Sbjct 300 CAACATCTGCAGCAGCGAGCTTGGCGAAAGGGAAAGCGAAAACAACATCTGCAGCAGTGA 359
Query 374 GCTTGGTGAAAGCGAAA 390
|||||| ||||| ||||
Sbjct 360 GCTTGGCGAAAGGGAAA 376
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36178648233
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5