BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G11610.1
Length=1944
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487999 jgi|Araly1|487999|fgenesh2_kg.6__1133__AT5G11610.1 2601 0.0
> Ahg487999 jgi|Araly1|487999|fgenesh2_kg.6__1133__AT5G11610.1
Length=1933
Score = 2601 bits (1408), Expect = 0.0
Identities = 1784/1960 (91%), Gaps = 47/1960 (2%)
Strand=Plus/Plus
Query 1 GAACAAAATTTAAAGCCATCGATTGCCTTGTCTTGTCTCTTTGCCTGTTAATTATTTGTC 60
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 GAACCAAATTTAAAGCCATCGATTGCCTTGTCTTGTCTCTTTGCTTGTTAATTATTTGTC 60
Query 61 TGAATCTTCCTCTCCTGATGATCACTCCAAGTAACTTC-AAAGAAACGCTCAGATTCGAC 119
|||||| ||||||||||||||||| |||||| |||||| ||| |||||||||||||||||
Sbjct 61 TGAATCCTCCTCTCCTGATGATCAATCCAAGAAACTTCGAAA-AAACGCTCAGATTCGAC 119
Query 120 AGTTCTATATATCAACAAACATCATCTCAAGCTCTTACCTGA--TATCTCTGTTTTGATG 177
||||| |||||||||||||||| | ||||||||||| |||| ||||| |||| |||||
Sbjct 120 AGTTCCATATATCAACAAACAT--T-TCAAGCTCTTATCTGATGTATCTGTGTTGTGATG 176
Query 178 GATCAAAGTCGGGTTTTGCGGTTTATAGGCCAAGTGGAAACCTGTAGAGTTGTTCTTCTC 237
|||| ||||||||||||||||||| || ||||||||||||| ||||||||||||||||||
Sbjct 177 GATCGAAGTCGGGTTTTGCGGTTTCTAAGCCAAGTGGAAACATGTAGAGTTGTTCTTCTC 236
Query 238 ATGGTTCTGGTTGTTGCCTTCGTTTCAGGCCTTCAGTATTTTGAGCTCTCTCCAGTACTA 297
||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||
Sbjct 237 ATGGTTCTGGTTGTTGCCTTCGTTTCAGGCCTTCAGTATTTCGAGCTCGCTCCAG---TA 293
Query 298 CTATCTATTGTTTCACCTGGAAACAGCACTATTTCTGAATTCAGAAAATCCAATGATACG 357
|||||||||||||||||||||||| ||||| ||||||||| |||| |||||||||||||
Sbjct 294 CTATCTATTGTTTCACCTGGAAACGGCACTGTTTCTGAATACAGAGAATCCAATGATACC 353
Query 358 ACTAAAAGTGCTGAAAATGAAACGTTTCTTGCATCTCAAGAAGCATCCACCGGGCTTAAA 417
|| |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 354 ACCAAAAGTACTGAAAATGAAACGTTTCTTGCATCTCAAGAAGCATCCACCGAGCTTAAA 413
Query 418 CCGTATAAC-AGA--ACTACAGAGGTATTGAAGAGTTCTGAGCACAAGTTTCTGAATGAT 474
|| |||||| | | ||| | ||||| |||||||||||||||||||||||||||||||||
Sbjct 414 CCATATAACAACATCACTTCGGAGGTTTTGAAGAGTTCTGAGCACAAGTTTCTGAATGAT 473
Query 475 TCTCACAAAATAGAAGCTTCTGGACAACGTAGAAGAAGCAATGAAACTGCAAGTTCTCTG 534
|||| ||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 474 TCTCCCAAAATAGAAGTTTCTGGACAAAGTAGAAGAAGCAATGAAACCGCAAGTTCTCTG 533
Query 535 CATCCTCTTCAACCAAAGATTCCTCAAATCCGCAAGAAATATCCCCATAGGAGCATAACA 594
||| |||||||||| | |||||||||||||| || |||||||||||||||||||| || |
Sbjct 534 CATTCTCTTCAACCCAGGATTCCTCAAATCCACAGGAAATATCCCCATAGGAGCACAAAA 593
Query 595 AAGCCACCA-TCAATTGTCATATCAATAA-AGCAGATGAACAATATGATATTGAAGCGGC 652
||||||||| | | ||||||||||||||| | ||||||||||| |||||||||||||| |
Sbjct 594 AAGCCACCAGT-AGTTGTCATATCAATAACA-CAGATGAACAAAATGATATTGAAGCGTC 651
Query 653 ATAATGATCCAAAAAATTCACTTGCACCTC-TCTGGGGATCAAAAGTGGACCAAGAGCTT 711
|||| ||||||||||||||||||||||||| | ||||||| |||||||||| ||||||||
Sbjct 652 ATAACGATCCAAAAAATTCACTTGCACCTCGT-TGGGGATTAAAAGTGGACGAAGAGCTT 710
Query 712 AAAACTGCAAGAGACAAGATCAAGAAAGCGGCTTTGGTCAAGAAAGATGATACTCTTTAC 771
| |||||||||||||||||||||||| |||| |||| ||||||| ||||||| ||||||
Sbjct 711 AGAACTGCAAGAGACAAGATCAAGAACGCGGGTTTGCTCAAGAAGGATGATAATCTTTAT 770
Query 772 GCACCTCTCTACCACAA-CATATCCATCTTCAAAAGGAGCTATGAGCTAATGGAACAAAC 830
|| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 771 GCGCCTCTCTACCACAATC-TATCCATCTTCAAAAGGAGCTATGAGCTAATGGAACAAAC 829
Query 831 TCTGAAAGTGTATGTCTACTCGGAAGGGGATAGACCAATTTTCCATCAGCCTGAGGCAAT 890
|||||||||||||||||||||||||||||| ||||| || ||||||||||| ||||||||
Sbjct 830 TCTGAAAGTGTATGTCTACTCGGAAGGGGACAGACCCATCTTCCATCAGCCGGAGGCAAT 889
Query 891 AATGGAAGGGATTTACGCATCAGAAGGATGGTTTATGAAACTAATGGAGAGTAGCCATAG 950
|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 890 AATGGAAGGGATTTACGCGTCAGAAGGATGGTTTATGAAACTAATGGAGAGTAACCATAG 949
Query 951 ATTCTTGACAAAAGATCCCACCAAAGCTCATTTATTCTACATACCTTTCAGTTCAAGAAT 1010
|||||||||||||||||||| || ||||||| |||||||| | ||||||||| |||||||
Sbjct 950 ATTCTTGACAAAAGATCCCAACATAGCTCATCTATTCTACTTGCCTTTCAGTACAAGAAT 1009
Query 1011 TCTTCAACAGAAACTTTACGTTCATGACTCTCACAGTCGTA-ATAATCTTGTTAAATATC 1069
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 1010 TCTTCAACAGAAACTTTACGTTCATGACTCTCACAGTCGTAGA-AATCTTGTTAAATATC 1068
Query 1070 TTGGAAACTACATTGATCTCATCGCTTCCAACTACCCTTCCTGGAATAGAACTTGTGGCT 1129
|| ||||||| | |||||||| |||||||||||||||| ||||||||||||| ||||||
Sbjct 1069 TTAAAAACTACCTCGATCTCATTGCTTCCAACTACCCTTTCTGGAATAGAACTCGTGGCT 1128
Query 1130 CCGATCATTTCTTCACCGCTTGCCATGACTGGGCTCCAACCGAGACTAGGGGACCGTACA 1189
|||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||
Sbjct 1129 CCGATCATTTCTTCACCGCTTGCCATGACTGGGCTCCAGCTGAGACTAGAGGACCGTACA 1188
Query 1190 TAAACTGCATCAGAGCACTCTGTAACGCCGATGTTGGCA-TAGACTTTGTGGTCGGAAAA 1248
||||||| || ||| ||||||||||||||||||| || | ||||||||||||||||||||
Sbjct 1189 TAAACTGTATTAGATCACTCTGTAACGCCGATGTCGG-AGTAGACTTTGTGGTCGGAAAA 1247
Query 1249 GATGTTTCTTTGCCGGAAACTAAAGTCTCTTCTTTGCAAAATCCAAACGGAAAAATTGGA 1308
||||| |||||||||||||| ||| ||||||| | ||||| ||||||||||| ||||||
Sbjct 1248 GATGTCTCTTTGCCGGAAACAAAAATCTCTTCGTCACAAAACCCAAACGGAAATATTGGA 1307
Query 1309 GGTAGCCGCCCTTCCAAGCGAACCATCCTCGCTTTTTTCGCCGGGAGCTTGCACGGTTAC 1368
|||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1308 GGTAACCGCCCTTCCAAGCGAACCATCCTCGCTTTTTTCGCCGGGAGCCTACACGGTTAT 1367
Query 1369 GTTAGACCCATCTTGCTTAACCAATGGTCATCGAGACCTGAACAAGATATGAAGATCTTT 1428
||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||
Sbjct 1368 GTTAGACCCATCTTGCTTAACCAATGGTCTTCGAGACCTGAGCCAGATATGAAGATCTTT 1427
Query 1429 AATCGTATCGATCATAAATCATACATCCGTTACATGAAACGCAGCAGATTCTGCGTTTGC 1488
|| || |||||||| ||||| |||||||| ||||||||||||||||||||||| ||||||
Sbjct 1428 AACCGGATCGATCACAAATCGTACATCCGGTACATGAAACGCAGCAGATTCTGTGTTTGC 1487
Query 1489 GCTAAAGGTTACGAGGTTAATAGCCCTAGAGTGGTTGAGTCGATTTTGTACGGTTGTGTT 1548
|| |||||||||||||| ||||||||||||||||| |||||| ||||||||||||| |||
Sbjct 1488 GCGAAAGGTTACGAGGTGAATAGCCCTAGAGTGGTGGAGTCGGTTTTGTACGGTTGCGTT 1547
Query 1549 CCGGTGATTATCTCTGATAACTTTGTGCCACCGTTTCTTGAGATTCTGAATTGGGAATCT 1608
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1548 CCGGTGATTATCTCTGATAATTTTGTGCCACCGTTTCTTGAGATTCTGAATTGGGAATCT 1607
Query 1609 TTCGCAGTGTTTGTGCCGGAGAAAGAGATCCCGAATCTAAGGAAGATTCTGATATCGATT 1668
||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1608 TTCGCTGTGTTTGTGCCGGAGAAAGAGATTCCGAATCTGAGGAAGATTCTGATATCGATT 1667
Query 1669 CCGGTGAGGAGATACGTGGAGATGCAAAAGAGGGTTTTGAAGGTTCAAAAACATTTCATG 1728
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1668 CCGGTGAGGAGATACGTGGAGATGCAAAAGAGGGTTATGAAGGTTCAAAAACATTTCATG 1727
Query 1729 TGGCATGATGGTGAACCGGTTCGGTATGATATATTTCATATGATTCTTCATTCGGTTTGG 1788
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 1728 TGGCATGATGGTGAACCGGTTCGGTATGATGTATTTCATATGATTCTTCACTCGGTTTGG 1787
Query 1789 TATAACCGAGTTTTTCAAACGTTTTAGCCAGATTA-AT-TA----GGTTTGACAAGGGT- 1841
|||||||| ||||||||||||||||||||||||| || || |||||| ||| ||
Sbjct 1788 TATAACCGGGTTTTTCAAACGTTTTAGCCAGATTTGATATAATCTGGTTTGGCAAAAGTG 1847
Query 1842 TT-TGGTTTGGCCTTTGCTACTTGCCAATAATTAACTACGTCTCCGGAAGATTGTATTTT 1900
|| ||||||| || | ||| | | ||| |||| || || | |||||||||| ||
Sbjct 1848 TTCTGGTTTGTA-TT-GTTACAT-C-AAT--TTAA--ACATCAACTTAAGATTGTATATT 1899
Query 1901 GTAGATTACTGATTCATATTAGCCAATTGGACTTGATTAC 1940
|| ||||| |||| |||||||||||||||||||||
Sbjct 1900 -TA-----CTGATACATAATAGCCAATTGGACTTGATTAC 1933
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73057089910
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5