BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G11620.1
Length=904
Score E
Sequences producing significant alignments: (Bits) Value
Ahg350357 jgi|Araly1|350357|fgenesh1_pg.C_scaffold_6000950 1221 0.0
> Ahg350357 jgi|Araly1|350357|fgenesh1_pg.C_scaffold_6000950
Length=819
Score = 1221 bits (661), Expect = 0.0
Identities = 771/824 (94%), Gaps = 7/824 (1%)
Strand=Plus/Plus
Query 20 ATGGAATCTGTCGGATCCAATCAAATATCCCCGTACGTAAGTAACCGTGACCAACGGCAT 79
||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||
Sbjct 1 ATGGAATCTGTCGGATCCAATCAAATATCTCCGTTCGTCAGTAACCGTGACCAACGGCAT 60
Query 80 TTCTTGGCTCAACCGGTGGCAGATAGGATACTTCGAGCTCTCCGTCACCGGATCCGTCTT 139
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 TTCTTGGCTCAACCGGTTGCAGATAGGATACTTCGAGCTCTCCGTCACCGAATCCGTCTT 120
Query 140 CTCCACCGTCCTAATGCAGGAACTTTTCACGTTCTTGGTGCAACGTGTAACGTCTACACA 199
||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 121 CTCCACCGTCCAAATGCCGGAACTTTTCACGTTCTCGGTGCAACGTGTAACGTCTACACC 180
Query 200 GTGACGCTAATGGCCACACCTACTTGCACTTGTCCCGACCGTAAGAAGCCGTGCAAACAC 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GTGACGCTAATGGCCACACCTACTTGCACTTGTCCCGACCGTAAGAAGCCGTGCAAACAC 240
Query 260 ATCTTGTTTGTCTTAATCCGAGTTCTTGGAATTCCTCTCGACGATAAGTGTCTCAGGCAA 319
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ATCTTGTTTGTCTTAATTCGAGTTCTTGGAATTCCTCTCGACGATAAGTGTCTCAGGCAA 300
Query 320 CGGAGACTCCGGACATGCCTCCTCTTCCACCTCTTCTCTGCCCCGACACGGCCTGACTGC 379
||||| |||||| |||| || ||||||| ||||||||||||||||| ||||||||||||
Sbjct 301 CGGAGGCTCCGGCCATGTCTACTCTTCCGTCTCTTCTCTGCCCCGACCCGGCCTGACTGC 360
Query 380 CTCGCCAGTTTCCGCCTCCAACAACGGTTTCTTCAGCTTTTCCCAGCCACCACTTCTCAA 439
|||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||
Sbjct 361 CTCGCCAGTTTCCGCCTCCAGCAACGGTTTCTTCAGCTTTTCTCAGCCGCCACTTCTCAA 420
Query 440 CCCGGCTATACTACTAACTCATCCTCCTCCACCAGTAAAATGGAAAATGAGGTGGATGAA 499
||||||||||||||||| | | |||||||||||||||||||||||||||||||| |||
Sbjct 421 CCCGGCTATACTACTAA-T--GCATCCTCCACCAGTAAAATGGAAAATGAGGTGGACGAA 477
Query 500 GAGCCGGCAACATGTCCAATATGTCTAGACGATATT-ATCGCAATAGAAAACGTAGACGG 558
|||||||||||||||||||||||||||||||||||| | ||| | | |||||||| ||||
Sbjct 478 GAGCCGGCAACATGTCCAATATGTCTAGACGATATTGA-CGCCACAAAAAACGTAAACGG 536
Query 559 TGGAAATGGTGGAGG-GAAGGAGAAGGAAACCGCGGTGGTGAAGTGCAGAGTATGCAAGA 617
|| |||||||||||| | |||||||||||| || |||||||||||||||||| |||||||
Sbjct 537 TGAAAATGGTGGAGGTG-AGGAGAAGGAAATCGTGGTGGTGAAGTGCAGAGTCTGCAAGA 595
Query 618 ACAAGGTTCATGATGAATGCATGCTGGCGTGGAGAAAGAGTCGTGGACGGCGGCCGGCCA 677
||||||||||||| |||||||||||||||||||| | |||||||||||||||||||| ||
Sbjct 596 ACAAGGTTCATGAAGAATGCATGCTGGCGTGGAGGAGGAGTCGTGGACGGCGGCCGGGCA 655
Query 678 TCTGTGTGGTATGCCGTGCACGGTGGCCAGCAAATAGATCGAGTAAGAATCCTAATGTTG 737
|||| |||||||| ||||||||||||||||| ||||| || ||||| |||||||||||||
Sbjct 656 TCTGCGTGGTATGTCGTGCACGGTGGCCAGCCAATAGTTCTAGTAAAAATCCTAATGTTG 715
Query 738 GTGATAATAACGAGAACTGCCACGGTAATTGTTATTTGAATTTAGCTCCTTACGTTGATG 797
||| |||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 716 GTGGTAATTACGAGAACTGCCACGGTAATTGTTACTTGAATCTAGCTCCTTACGTTGATG 775
Query 798 AGGAAGTGGAGGATGGGGTTGGCACGAGCCAACGGCCATGTTGA 841
|||||||||||||||||||||||||||||||||| |||||||||
Sbjct 776 AGGAAGTGGAGGATGGGGTTGGCACGAGCCAACGCCCATGTTGA 819
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33510044043
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5