BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G11620.1 Length=904 Score E Sequences producing significant alignments: (Bits) Value Ahg350357 jgi|Araly1|350357|fgenesh1_pg.C_scaffold_6000950 1221 0.0 > Ahg350357 jgi|Araly1|350357|fgenesh1_pg.C_scaffold_6000950 Length=819 Score = 1221 bits (661), Expect = 0.0 Identities = 771/824 (94%), Gaps = 7/824 (1%) Strand=Plus/Plus Query 20 ATGGAATCTGTCGGATCCAATCAAATATCCCCGTACGTAAGTAACCGTGACCAACGGCAT 79 ||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||| Sbjct 1 ATGGAATCTGTCGGATCCAATCAAATATCTCCGTTCGTCAGTAACCGTGACCAACGGCAT 60 Query 80 TTCTTGGCTCAACCGGTGGCAGATAGGATACTTCGAGCTCTCCGTCACCGGATCCGTCTT 139 ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct 61 TTCTTGGCTCAACCGGTTGCAGATAGGATACTTCGAGCTCTCCGTCACCGAATCCGTCTT 120 Query 140 CTCCACCGTCCTAATGCAGGAACTTTTCACGTTCTTGGTGCAACGTGTAACGTCTACACA 199 ||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||| Sbjct 121 CTCCACCGTCCAAATGCCGGAACTTTTCACGTTCTCGGTGCAACGTGTAACGTCTACACC 180 Query 200 GTGACGCTAATGGCCACACCTACTTGCACTTGTCCCGACCGTAAGAAGCCGTGCAAACAC 259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 GTGACGCTAATGGCCACACCTACTTGCACTTGTCCCGACCGTAAGAAGCCGTGCAAACAC 240 Query 260 ATCTTGTTTGTCTTAATCCGAGTTCTTGGAATTCCTCTCGACGATAAGTGTCTCAGGCAA 319 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 241 ATCTTGTTTGTCTTAATTCGAGTTCTTGGAATTCCTCTCGACGATAAGTGTCTCAGGCAA 300 Query 320 CGGAGACTCCGGACATGCCTCCTCTTCCACCTCTTCTCTGCCCCGACACGGCCTGACTGC 379 ||||| |||||| |||| || ||||||| ||||||||||||||||| |||||||||||| Sbjct 301 CGGAGGCTCCGGCCATGTCTACTCTTCCGTCTCTTCTCTGCCCCGACCCGGCCTGACTGC 360 Query 380 CTCGCCAGTTTCCGCCTCCAACAACGGTTTCTTCAGCTTTTCCCAGCCACCACTTCTCAA 439 |||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||| Sbjct 361 CTCGCCAGTTTCCGCCTCCAGCAACGGTTTCTTCAGCTTTTCTCAGCCGCCACTTCTCAA 420 Query 440 CCCGGCTATACTACTAACTCATCCTCCTCCACCAGTAAAATGGAAAATGAGGTGGATGAA 499 ||||||||||||||||| | | |||||||||||||||||||||||||||||||| ||| Sbjct 421 CCCGGCTATACTACTAA-T--GCATCCTCCACCAGTAAAATGGAAAATGAGGTGGACGAA 477 Query 500 GAGCCGGCAACATGTCCAATATGTCTAGACGATATT-ATCGCAATAGAAAACGTAGACGG 558 |||||||||||||||||||||||||||||||||||| | ||| | | |||||||| |||| Sbjct 478 GAGCCGGCAACATGTCCAATATGTCTAGACGATATTGA-CGCCACAAAAAACGTAAACGG 536 Query 559 TGGAAATGGTGGAGG-GAAGGAGAAGGAAACCGCGGTGGTGAAGTGCAGAGTATGCAAGA 617 || |||||||||||| | |||||||||||| || |||||||||||||||||| ||||||| Sbjct 537 TGAAAATGGTGGAGGTG-AGGAGAAGGAAATCGTGGTGGTGAAGTGCAGAGTCTGCAAGA 595 Query 618 ACAAGGTTCATGATGAATGCATGCTGGCGTGGAGAAAGAGTCGTGGACGGCGGCCGGCCA 677 ||||||||||||| |||||||||||||||||||| | |||||||||||||||||||| || Sbjct 596 ACAAGGTTCATGAAGAATGCATGCTGGCGTGGAGGAGGAGTCGTGGACGGCGGCCGGGCA 655 Query 678 TCTGTGTGGTATGCCGTGCACGGTGGCCAGCAAATAGATCGAGTAAGAATCCTAATGTTG 737 |||| |||||||| ||||||||||||||||| ||||| || ||||| ||||||||||||| Sbjct 656 TCTGCGTGGTATGTCGTGCACGGTGGCCAGCCAATAGTTCTAGTAAAAATCCTAATGTTG 715 Query 738 GTGATAATAACGAGAACTGCCACGGTAATTGTTATTTGAATTTAGCTCCTTACGTTGATG 797 ||| |||| ||||||||||||||||||||||||| |||||| |||||||||||||||||| Sbjct 716 GTGGTAATTACGAGAACTGCCACGGTAATTGTTACTTGAATCTAGCTCCTTACGTTGATG 775 Query 798 AGGAAGTGGAGGATGGGGTTGGCACGAGCCAACGGCCATGTTGA 841 |||||||||||||||||||||||||||||||||| ||||||||| Sbjct 776 AGGAAGTGGAGGATGGGGTTGGCACGAGCCAACGCCCATGTTGA 819 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33510044043 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5