BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G11630.1

Length=653
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg940641 jgi|Araly1|940641|scaffold_601185.1                        516    9e-146
  Ahg488003 jgi|Araly1|488003|fgenesh2_kg.6__1137__AT5G11640.1         244    5e-64 


> Ahg940641 jgi|Araly1|940641|scaffold_601185.1
Length=324

 Score =  516 bits (279),  Expect = 9e-146
 Identities = 309/324 (95%), Gaps = 0/324 (0%)
 Strand=Plus/Plus

Query  64   TTCGTTTCGTTTTTCCGGCAAAATGGCTTCACGATGTCGATCTTTGTCAAAACCAGCGTT  123
            |||||||||||| |||| |||||||||||| ||||||||||||||||| |||||||||||
Sbjct  1    TTCGTTTCGTTTATCCGACAAAATGGCTTCTCGATGTCGATCTTTGTCGAAACCAGCGTT  60

Query  124  TTCTGCGTTTAGATCTGCAATGAACAAGCCATCTATTCGTCCCAAATCGGCTTCATCATT  183
             |||| |||||||||||||||||||||||| ||| | || ||||||||||||||||||||
Sbjct  61   GTCTGTGTTTAGATCTGCAATGAACAAGCCCTCTCTCCGACCCAAATCGGCTTCATCATT  120

Query  184  CATCGGCGTCCCTCCTTCGCCTGGATTTTCGAGGCCGATTGGTCAGCTGGGTTCGCTTCA  243
            | ||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||
Sbjct  121  CCTCGGCGTCCCTCCTTCGCCTGGACTTTCGAGGCCAATTGCTCAGCTGGGTTCGCTTCA  180

Query  244  ATCGTTGCTTCCATTGTACAGTGCGGTGGCTTCAGCTAGATTGACTTCGTGCCTGGGTAT  303
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  181  ATCGTTGCTTCCATTGTACAGTGCGGTGGCTTCAGCTAGATTGACTTCGTGCCTTGGTAT  240

Query  304  CGATTCACAGAATTCTAGGTCATTAGCTCAGGGTATGCTCTGCAGTGCGAATCCAGGAGT  363
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  CGATTCACAGAATTCTAGGTCATTAGCTCAGGGTATGCTCTGCAGTGCGAATCCAGGAGT  300

Query  364  TTGATATTCTTCCAAATGTTTTGT  387
            ||||||||||||||||||||||||
Sbjct  301  TTGATATTCTTCCAAATGTTTTGT  324


> Ahg488003 jgi|Araly1|488003|fgenesh2_kg.6__1137__AT5G11640.1
Length=1006

 Score =  244 bits (132),  Expect = 5e-64
 Identities = 140/144 (97%), Gaps = 0/144 (0%)
 Strand=Plus/Plus

Query  510  GAGATAGCAAACATGGAGAAGAAACGCGAAGGAGTAATCGAAGGAATGAGTCGGATCGTA  569
            ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  1    GAGATAGCAAAAATGGAGAAGAAGCGCGAAGGAGTAATCGAAGGAATGAGTCGGATCGTA  60

Query  570  TCAGATCCTTACTACTTCCTCCATTTCATGGCCTTTTTCTCTTACCTCCCGATTCGTAGC  629
            |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  61   TCAGATCCTTACTATTTCCTCCATTTCATGGCCTTTTTCTCTTACCTTCCGATTCGTAGC  120

Query  630  TCCGCCGCACCGTACACTTCTCAT  653
            ||||||||||||||||||||||||
Sbjct  121  TCCGCCGCACCGTACACTTCTCAT  144



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23941191876


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5