BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G11640.1
Length=1050
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488003 jgi|Araly1|488003|fgenesh2_kg.6__1137__AT5G11640.1 1493 0.0
> Ahg488003 jgi|Araly1|488003|fgenesh2_kg.6__1137__AT5G11640.1
Length=1006
Score = 1493 bits (808), Expect = 0.0
Identities = 854/877 (97%), Gaps = 0/877 (0%)
Strand=Plus/Plus
Query 1 GAGATAGCAAACATGGAGAAGAAACGCGAAGGAGTAATCGAAGGAATGAGTCGGATCGTA 60
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 GAGATAGCAAAAATGGAGAAGAAGCGCGAAGGAGTAATCGAAGGAATGAGTCGGATCGTA 60
Query 61 TCAGATCCTTACTACTTCCTCCATTTCATGGCCTTTTTCTCTTACCTCCCGATTCGTAGC 120
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 TCAGATCCTTACTATTTCCTCCATTTCATGGCCTTTTTCTCTTACCTTCCGATTCGTAGC 120
Query 121 TCCGCCGCACCGTACACTTCTCATCGACTCTTCGACAGAGAAATCCAAGCATTTCTAGCG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCCGCCGCACCGTACACTTCTCATCGACTCTTCGACAGAGAAATCCAAGCATTTCTAGCG 180
Query 181 TTTCTTATGTTTTCCGCCATTAAGATGGTGAGGGAGGAAACATGGGAAGCTTTCGTTGCT 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTTCTTATGTTTTCCGCCATTAAGATGGTGAGGGAGGAAACATGGGAAGCTTTCGTTGCG 240
Query 241 GATAGTTTACTCTATGCTAAGATCTTTCTTATTGCGGTTTCGTTGATTATGGATTATCGA 300
||||||||||||||||||||||||||||| || || ||||| ||||||||||||||||||
Sbjct 241 GATAGTTTACTCTATGCTAAGATCTTTCTCATAGCAGTTTCATTGATTATGGATTATCGA 300
Query 301 GTGGCGGTCTGGTTTAGTATCATATTTTCAGTTATATATCTATTAGCTCAACAACCAGCA 360
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GTGGCGATCTGGTTTAGTGTCATATTTTCAGTTATATATCTATTAGCTCAACAACCAGCA 360
Query 361 TTTAGTAAACTAGGAACTGCGAAGAAGCTAACACCTATGCAGTTGGAGGATTTGTTATCA 420
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 361 TTTAGTAAACTAGGAACTGCGAAGAAGCTTACACCTATGCAATTGGAGGATTTGTTATCA 420
Query 421 GATGGTAACACAACAAAATACTGGTTGATAGAATTCTTTGCATGTAGTTCATCCAAGTGT 480
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GATGGGAGCACAACAAAATACTGGTTGATAGAATTCTTTGCATGTAGTTCATCCAAGTGT 480
Query 481 GTTCGTTCTAGCCGTTGCTTTCCTGAGCTCTCCATCACGTACTCGAATAATCTTTTGTCT 540
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 481 GTTCGTTCTAGCCGTTGCTTTCCTGAGCTCTCCATCACGTACTCGAACAATCTTTTGTCT 540
Query 541 TTTGGAACTGTCGATCTTGGACTTTTCCCTAATACTGCGGCAAAGTTTGGAATATCTCTT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TTTGGAACTGTCGATCTTGGACTTTTCCCTAATACTGCGGCAAAGTTTGGAATATCTCTT 600
Query 601 GCTGGTGGAATGTCTCAGCTTCCCACATACATATTGTTTGAAAAGGGTGTCGAAGTTTCT 660
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GCGGGTGGAATGTCTCAGCTTCCCACATACATATTGTTTGAAAAGGGTGTCGAAGTTTCT 660
Query 661 CGGTTCCCAGACTTTTATGTTGACGCTGCACCTTCTTTACCCATAACCAAGAAACTTTTG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CGGTTCCCAGACTTTTATGTTGACGCTGCACCTTCTTTACCCATAACCAAGAAACTTTTG 720
Query 721 TGTCAACATTTTGAGCTTGATCGGCTTCTGCTCGACTATATAAACGGAACATAGCTGGAG 780
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 721 TGTCAACATTTTGAGCTTGATCGGCTTCTGCTCGACTATATAAACGGATCATAGCTGGAG 780
Query 781 AAAACGAGTAAACGGATATACGACTATCTGGCTTCTCCTGCAAGAGCAGTATGAACACAT 840
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 AAAACGAGTTAACTGATATACGACTATCTGGCTTCTCCTGCAAGAGCAGTATGAACACAT 840
Query 841 CAACACACCATTGGACTACCACATTCGTATGTTTATT 877
|||| |||||| |||||| ||||||||||||||||||
Sbjct 841 CAACGCACCATCGGACTATCACATTCGTATGTTTATT 877
Score = 189 bits (102), Expect = 4e-47
Identities = 125/135 (93%), Gaps = 6/135 (4%)
Strand=Plus/Plus
Query 916 AAAAAAGGACAGATTATATTTTAGTGCTATAGAGAGATAGAAAGATTCTGTTGAAATTTT 975
|||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 878 AAAAAA-GACAGATTATATTTTAGTGCTATAGAGAG--AG-AAGATTCTGTTGAAATTTT 933
Query 976 ATGGGGATTGAGTTTCGACAAAGAATTCTTGAATACGATGGTAAAATGAAATCTCAATTT 1035
|||||| |||| ||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 934 ATGGGGCTTGAATTTCGACAAAGAATTCTTGAATAGGATGGTAA--TGAAATCTCAATTT 991
Query 1036 CTGACTTTGAAATTT 1050
|||||||| ||||||
Sbjct 992 CTGACTTTTAAATTT 1006
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39075989925
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5