BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G11650.1
Length=1571
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488004 jgi|Araly1|488004|fgenesh2_kg.6__1138__AT5G11650.1 2396 0.0
Ahg920845 jgi|Araly1|920845|scaffold_102126.1 364 8e-100
Ahg936456 jgi|Araly1|936456|scaffold_500647.1 361 1e-98
Ahg948625 jgi|Araly1|948625|scaffold_800512.1 359 4e-98
Ahg946882 jgi|Araly1|946882|scaffold_703111.1 161 1e-38
> Ahg488004 jgi|Araly1|488004|fgenesh2_kg.6__1138__AT5G11650.1
Length=1543
Score = 2396 bits (1297), Expect = 0.0
Identities = 1450/1521 (95%), Gaps = 21/1521 (1%)
Strand=Plus/Plus
Query 54 ttt-tttttACTATTTGTGATTTTGAATTTTCCGGCGATGGCGTCAACGT-CGGCGGAAA 111
||| ||||||| ||||||| |||||| ||||||||||||||||||||| | |||||||||
Sbjct 32 TTTATTTTTACGATTTGTGTTTTTGATTTTTCCGGCGATGGCGTCAAC-TCCGGCGGAAA 90
Query 112 TGGACCAATTAACATCAGGCGCGAGCAATCGGATAATATTTATCTTGAGAACGCTTAGGA 171
|||| ||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 91 TGGAACAATTGACATCAGGCGCGAGTAATCGGATAATATTTATCTTGAGAACGCTAAGGA 150
Query 172 AGTgtctcgtcttcgttctctctctcgtcctttctcttctccttattcttcgtctccgtc 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 151 AGTGTCTCGTCTTCGTTCTCTCTCTCGTCCTTTCTCTTCTCCTTATTCTTCGTCTCCGTC 210
Query 232 ctcgtcgccgtgtctctcctctttcATCGCCTGAGGATGAGGCTGTTCCGGCTCCTTCGA 291
|||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 211 CTCGTCGCCGTGTCTCGCCTCTTTCATCGCCGGAGGAGGAGGCTGTTCCGGCTCCTTCGA 270
Query 292 GGCGATGGAGACGGAAGATGGCGTGGAAGCTGGAGGAGGAAGATACGGCTAGACGTCGTT 351
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 271 GGCGATGGAGGCGGAAGATGGCGTGGAAGCTGGAGGAGGAAGATACGGCTAGACGTCGTT 330
Query 352 CCTTAGCGGAAGGCGTTGAGATGGCCGGAGATGGAGAGATCTCTTGTTCGTTGTTTTACG 411
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 331 CCTTAGCAGAAGGCGTTGAGATGGCCGGAGATGGAGAGATCTCTTGTTCGTTGTTTTATG 390
Query 412 GACGTCGTGGTAACGCTTTATTCTCTCGGTCGTGGTTGCCTATTTCCGGCGAACTTAGGG 471
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 391 GCCGTCGTGGTAACGCTTTATTCTCTCGGTCGTGGTTGCCTATTTCCGGCGAACTTAGGG 450
Query 472 GGATTTTGATTATTATCCATGGATTGAATGAACACAGTGGAAGATATTCTCAATTCGCTA 531
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 451 GGATTTTGATTATTATCCATGGATTGAATGAACACAGTGGAAGATATTCTCAATTCGCCA 510
Query 532 AGCAGCTAAACGCGAGTAATTTAGGTGTATACGCAATGGACTGGATTGGTCACGGTGGGA 591
||||| | ||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 511 AGCAGTTGAACTCTAGTAATTTAGGTGTATACGCAATGGACTGGATTGGTCACGGTGGGA 570
Query 592 GTGATGGTTTGCATGGTTATGTTCCTTCTCTTGATTATGTTGTTTCCGACACTGAAGCTT 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 571 GTGATGGTTTGCATGGTTATGTTCCTTCTCTTGATTATGTTGTTTCCGACACTGAAGCTT 630
Query 652 TCTTGGAAAAGATTAGGTCTGAGAATCCGGGGGTTCCGTGTTTCCTCTTTGGTCACTCTA 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 631 TCTTGGAAAAGATTAGGTCTGAGAATCCGGGGGTTCCGTGTTTCCTCTTTGGTCATTCTA 690
Query 712 CCGGTGGAGCTGTGGTTTTGAAGGCAGCTTCATCTCCCTCTATTGAAGATATGTTAGCCG 771
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 691 CCGGTGGAGCTGTGGTTTTGAAGGCAGCTTCATCTCCCTCTATCGAAGATATGTTAGCCG 750
Query 772 GTATTGTCCTAACATCGCCTGCACTCCGTGTCAAACCCGCTCATCCCATTGTCGGGGCAA 831
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 751 GTATTGTCCTAACATCGCCTGCGCTTCGTGTCAAACCCGCTCATCCCATTGTCGGGGCAA 810
Query 832 TAGCTCCAATCTTCTCATTGCTCGCACCAAGGTTCCAATTCAAAGGAGCAAACAAGAGAG 891
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 811 TAGCTCCAATCTTCTCATTGGTCGCACCAAGGTTCCAATTCAAAGGAGCAAACAAGAGAG 870
Query 892 GCATTCCGGTCTCAAGAGACCCTGAAGCTCTCTTAGCCAAGTACTCTGATCCGTTAGTCT 951
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 871 GCATTCCGGTCTCAAGAGACCCTGAAGCTCTCTTAGCCAAATACTCTGATCCGTTAGTCT 930
Query 952 ACACTGGTCCGATTAGAGTCCGAACAGGGTATGAGATTCTTCGCATAACGGCTTACTTGA 1011
|||||||||| ||||| |||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 931 ACACTGGTCCAATTAGGGTCCGAACAGGGCATGAGATTCTTCGCATAACAGCTTACTTGA 990
Query 1012 CCCGGAACTTCAAATCTGTTACAGTGCCTTTCTTTGTTCTCCATGGTACAGAGGACAAAG 1071
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 991 CCCGGAACTTCAAATCTGTTACAGTGCCTTTCTTTGTTCTCCATGGTACAGAGGACAAAG 1050
Query 1072 TCACTGATCCACTAGCTTCCCAAGACTTGTATAATCAGGCACCATCAGTTTTCAAAGACA 1131
||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||
Sbjct 1051 TCACTGATCCACTAGCTTCACAAGACTTGTATAATCAGGCTCCATCAATTTTCAAAGACA 1110
Query 1132 TCAAACTCTATGACGGTTTCTTACACGACCTTCTCTTTGAACCTGAGCGTGAGGAAGTCG 1191
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1111 TCAAACTCTATGACGGTTTCTTACACGATCTTCTCTTTGAACCTGAGCGTGAGGAAGTCG 1170
Query 1192 GTCGTGATATCATAGATTGGATGATGAATCGGCTTGACGATGTTAACGGATCAGCAGCTA 1251
||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1171 GTCGTGATATCATTGATTGGATGATGAAGCGGCTTGACGATGTTAACGGATCAGCAGCTG 1230
Query 1252 GCCTCTGGTAAAAGATCAAATGAGACGTCAGAGGTCTTCATCTTCTATAGATAGTTGTGA 1311
| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1231 GGATCTGGTAAAAGATCAAATGAGATATCAGAGGTCTTCATCTTCTATAGATAGTTGTGA 1290
Query 1312 TACAAATGGTGTGATTGTAAAATCAGAAACCAAGTGTAGGAGATACATAATTACATATCA 1371
||||||||||||||||||||||||||||||||||||||||||||||||| | | | | |
Sbjct 1291 TACAAATGGTGTGATTGTAAAATCAGAAACCAAGTGTAGGAGATACATA-T-A-A-A--A 1344
Query 1372 CATGGGTTTAATCTATGAATTGTTTGATTTTTGATATTCGCTGTGACGATCTTTTGGGCC 1431
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1345 --TGGGCTTAATCTATGAATTGTTTGATTTTTGATATTCGCTGTGACGATCTTTTGGGCC 1402
Query 1432 TATTTTGAAGGGCATTGTTGCC-ATTGAGCCTATATGGGTAT-ATGTG-A--t-t-ttt- 1483
||||||||||||||||||| || ||||||||||||||| ||| || || | | | |||
Sbjct 1403 TATTTTGAAGGGCATTGTTTCCCATTGAGCCTATATGGCTATTATATGTAAATATATTTA 1462
Query 1484 ttttttggtttttGGGCAATGTTATATGTATATA-ATCAATGTAAATTTGGGTGGATTTT 1542
|||||| |||||||||||| | |||||||||| |||||||||||||||||||||||||
Sbjct 1463 TTTTTTATTTTTTGGGCAATATAATATGTATATTTATCAATGTAAATTTGGGTGGATTTT 1522
Query 1543 T-CATTTTTCTAATTTAAACT 1562
| |||||||| ||||||||||
Sbjct 1523 TTCATTTTTCAAATTTAAACT 1543
> Ahg920845 jgi|Araly1|920845|scaffold_102126.1
Length=304
Score = 364 bits (197), Expect = 8e-100
Identities = 209/215 (97%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 367 TTGAGATGGCCGGAGATGGAGAGATCTCTTGTTCGTTGTTTTACGGACGTCGTGGTAACG 426
||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||
Sbjct 19 TTGAGATGGCCGGAGATGGAGAGATCTTTTGTTCGTTGTTTTATGGCCGTCGTGGTAACG 78
Query 427 CTTTATTCTCTCGGTCGTGGTTGCCTATTTCCGGCGAACTTAGGGGGATTTTGATTATTA 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 79 CTTTATTCTCTCGGTCGTGGTTGCCTATTTCCGGCGAACTTAGGGGGATTTTGATTATTA 138
Query 487 TCCATGGATTGAATGAACACAGTGGAAGATATTCTCAATTCGCTAAGCAGCTAAACGCGA 546
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 139 TCCATGGATTGAATGAACACAGTGGAAGATATTCTCAATTCGCTAAGCAGTTAAACTCGA 198
Query 547 GTAATTTAGGTGTATACGCAATGGACTGGATTGGT 581
||||||| |||||||||||||||||||||||||||
Sbjct 199 GTAATTTGGGTGTATACGCAATGGACTGGATTGGT 233
> Ahg936456 jgi|Araly1|936456|scaffold_500647.1
Length=304
Score = 361 bits (195), Expect = 1e-98
Identities = 207/213 (97%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 367 TTGAGATGGCCGGAGATGGAGAGATCTCTTGTTCGTTGTTTTACGGACGTCGTGGTAACG 426
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 19 TTGAGATGGCCGGAGATGGAGAGATCTCTTGTTCGTTGTTTTATGGCCGTCGTGGTAACG 78
Query 427 CTTTATTCTCTCGGTCGTGGTTGCCTATTTCCGGCGAACTTAGGGGGATTTTGATTATTA 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 79 CTTTATTCTCTCGGTCGTGGTTGCCTATTTCCGGCGAACTTAGGGGGATTTTGATTATTA 138
Query 487 TCCATGGATTGAATGAACACAGTGGAAGATATTCTCAATTCGCTAAGCAGCTAAACGCGA 546
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 139 TCCATGGATTGAATGAACACAGTGGAAGATATTCTCAATTCGCTAAGCAGTTAAACTCGA 198
Query 547 GTAATTTAGGTGTATACGCAATGGACTGGATTG 579
||||||| ||||||||| |||||||||||||||
Sbjct 199 GTAATTTGGGTGTATACACAATGGACTGGATTG 231
> Ahg948625 jgi|Araly1|948625|scaffold_800512.1
Length=304
Score = 359 bits (194), Expect = 4e-98
Identities = 208/215 (97%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 367 TTGAGATGGCCGGAGATGGAGAGATCTCTTGTTCGTTGTTTTACGGACGTCGTGGTAACG 426
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 19 TTGAGATGGCCGGAGATGGAGAGATCTCTTGTTCGTTGTTTTATGGCCGTCGTGGTAACG 78
Query 427 CTTTATTCTCTCGGTCGTGGTTGCCTATTTCCGGCGAACTTAGGGGGATTTTGATTATTA 486
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 79 CTTTATTCTCTCGGTCGTGGTTGCCTATTTCCGACGAACTTAGGGGGATTTTGATTATTA 138
Query 487 TCCATGGATTGAATGAACACAGTGGAAGATATTCTCAATTCGCTAAGCAGCTAAACGCGA 546
|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||
Sbjct 139 TCCATGGATTGAATGAACACAGTGGAAGATATTCTCAATTCGTTAAGCAGTTAAACTCGA 198
Query 547 GTAATTTAGGTGTATACGCAATGGACTGGATTGGT 581
||||||| |||||||||||||||||||||||||||
Sbjct 199 GTAATTTGGGTGTATACGCAATGGACTGGATTGGT 233
> Ahg946882 jgi|Araly1|946882|scaffold_703111.1
Length=256
Score = 161 bits (87), Expect = 1e-38
Identities = 98/103 (95%), Gaps = 1/103 (1%)
Strand=Plus/Plus
Query 367 TTGAGATGGCCGGAGATGGAGAGATCTCTTGTTCGTTGTTTTACGGACGTCGTGGTAACG 426
|||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||
Sbjct 19 TTGAGATGGCCGGAGATGGAGAGATCTCTTGTTCATTGTTTTATGGCCGTCGTGGTAACG 78
Query 427 CTTTATTCTCTCGGTCGTGGTTGCCTATTTCCGGCGAACTTAG 469
||||||||||||||||||||||||||||| || ||||||||||
Sbjct 79 CTTTATTCTCTCGGTCGTGGTTGCCTATT-CCAGCGAACTTAG 120
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58849428525
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5