BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G11670.1
Length=2176
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488005 jgi|Araly1|488005|fgenesh2_kg.6__1139__AT5G11670.1 3221 0.0
Ahg489440 jgi|Araly1|489440|fgenesh2_kg.6__2574__AT5G25880.1 1040 0.0
> Ahg488005 jgi|Araly1|488005|fgenesh2_kg.6__1139__AT5G11670.1
Length=2037
Score = 3221 bits (1744), Expect = 0.0
Identities = 1956/2055 (95%), Gaps = 27/2055 (1%)
Strand=Plus/Plus
Query 9 ACAATAAGCTCCAATTTTCAGACTTTTCATTTCAAACT-TG--TG-G-GTCTCATTTTCC 63
||||||||||| |||||||||||||||||||||||||| || || | || |||||||||
Sbjct 1 ACAATAAGCTCAAATTTTCAGACTTTTCATTTCAAACTCTGTATGTGTGTGTCATTTTCC 60
Query 64 TCTGGCCTATATAAATCCACTATCCTCCACTTCTGTCTTTCATCATCATTCCACATAAAC 123
| | ||||||||||||| ||||||||||| || |||| ||||| ||| | |
Sbjct 61 T-TTGCCTATATAAATCAACTATCCTCCA------TC-ATCAT--TCATT-CACCT-TA- 107
Query 124 AAAATATCTTCTTGCTCATTATTCATC--ATCAATCTACTACTCCGTAAACTTTGCTTCC 181
||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||
Sbjct 108 AAAATATCTTCTTGCTCATTATTCATCATATCAATCTACT-CT--GTAAACTTTGCTTCC 164
Query 182 TCTGTTTGTATTAGCTCAGAAGAGATATGGGAAGTACTCCGACTGATTTACCCGGTGAGG 241
||||||||| |||||||| ||||| ||||||||||||||| ||||| |||||| ||||||
Sbjct 165 TCTGTTTGTGTTAGCTCATAAGAGTTATGGGAAGTACTCCAACTGAATTACCCTGTGAGG 224
Query 242 ATGTCGCCGATAACAGATCCGGCGTCGGCGGTGGTATTTCTGACGTCTACGGTGAGGATT 301
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 225 ATGTCGCCGATAACAGATCCGGCGTTGGTGGTGGTATTTCTGACGTCTACGGTGAGGATT 284
Query 302 CCGCCACCTTGGACCAGCTTGTCACCCCTTGGGTTACCTCTGTCGCTAGTGGCTACACAT 361
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |
Sbjct 285 CCGCCACCTTGGACCAGCTTGTCACCCCTTGGGTTACCTCCGTCGCTAGTGGCTACTCGT 344
Query 362 TGATGCGTGATCCGAGATACAACAAGGGACTTGCGTTTACTGATAAAGAAAGAGATGCTC 421
|||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 345 TGATGCGTGATCCGCGTTACAACAAGGGACTTGCATTTACTGATAAAGAAAGAGATGCTC 404
Query 422 ATTACTTAACTGGTCTTCTTCCCCCTGTGATTTTGAGTCAGGATGTTCAGGAGAGGAAGG 481
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||
Sbjct 405 ATTACTTAACTGGTCTTCTTCCTCCTGTGGTTTTGAGTCAGGATGTTCAGGAGAGAAAGC 464
Query 482 TGATGCACAATCTCCGTCAGTACACTGTTCCTCTGCAGCGTTACATGGCCCTGATGGATC 541
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 465 TGATGCACAATCTCCGTCAGTACACTGTTCCTCTACAGCGTTACATGGCCCTGATGGATC 524
Query 542 TTCAGGAAAGGAACGAGAGGTTGTTCTACAAGCTTTTGATTGATAACGTTGAGGAGTTGC 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 525 TTCAGGAAAGGAACGAGAGGTTGTTCTACAAGCTTTTGATTGATAACGTTGAGGAGTTGC 584
Query 602 TTCCAGTTGTGTACACACCAACAGTTGGTGAGGCTTGCCAGAAGTATGGGAGCATTTTCA 661
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 585 TTCCAGTTGTGTACACACCAACAGTTGGTGAGGCTTGCCAGAAGTATGGAAGCATTTACA 644
Query 662 GGAAGCCACAGGGTCTCTACATCAGTTTGAACGAGAAGGGCAAGATTCTTGAAGTTTTGA 721
||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||
Sbjct 645 GGAAGCCACAGGGTCTCTACATCAGTTTGAAAGAAAAGGGCAAGATTCTTGAAGTGTTGA 704
Query 722 AGAACTGGCCCCAGAGAGGAATCCAAGTTATTGTTGTTACTGATGGTGAGCGGATTCTCG 781
||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||
Sbjct 705 AGAACTGGCCCCAGAGAGGGATCCAAGTTATCGTTGTTACAGATGGTGAGCGGATTCTCG 764
Query 782 GTCTGGGAGATCTTGGTTGCCAGGGAATGGGAATTCCAGTGGGGAAACTTTCTCTTTACA 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 765 GTCTGGGAGATCTTGGTTGCCAGGGAATGGGAATTCCAGTGGGGAAACTTTCTCTTTACA 824
Query 842 CCGCTTTGGGAGGAATCCGTCCATCAGCTTGTCTTCCAATCACCATTGATGTGGGTACAA 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 825 CCGCTTTGGGAGGAATCCGTCCATCAGCTTGTCTTCCAATCACCATTGATGTGGGTACAA 884
Query 902 ACAATGAGAAGTTGCTAAATGATGAATTCTACATCGGTCTTAAACAGCGAAGAGCAACTG 961
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 885 ACAATGAGAAGTTGCTAAATGATGAATTCTACATTGGCCTTAAACAGCGAAGAGCAACTG 944
Query 962 GCCAGGAATATGCTGAATTCCTGCACGAATTCATGTGCGCTGTAAAGCAGAACTATGGAG 1021
|||||||||||||||| ||||| ||||| |||||||| ||||| ||||||||||||||||
Sbjct 945 GCCAGGAATATGCTGAGTTCCTCCACGAGTTCATGTGTGCTGTTAAGCAGAACTATGGAG 1004
Query 1022 AGAAAGTGTTGGTTCAGTTTGAAGATTTTGCAAACCACAATGCGTTTGACCTTTTGTCTA 1081
||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1005 AGAAAGTGTTGGTACAGTTTGAAGATTTTGCAAACCACAATGCCTTTGACCTATTGTCTA 1064
Query 1082 AGTACAGTGATAGCCATCTTGTCTTCAATGACGATATCCAGGGTACTGCATCCGTGGTGC 1141
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1065 AGTACAGCGATAGCCATCTTGTTTTCAATGACGATATCCAGGGTACTGCATCCGTGGTGC 1124
Query 1142 TTGCTGGGCTTATTGCCGCTCAGAAGGTGCTTGGTAAAAAACTGGCTGACCATACCTTCC 1201
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1125 TTGCTGGGCTTATTGCCGCTCAGAAGGTGCTTGGTAAAAAGCTGGCTGACCATACCTTCC 1184
Query 1202 TGTTCTTGGGTGCCGGAGAGGCTGGAACCGGTATCGCTGAGCTAATTGCTCTTAAGATTT 1261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 TGTTCTTGGGTGCCGGAGAGGCTGGAACCGGTATCGCTGAGCTAATTGCTCTTAAGATTT 1244
Query 1262 CGAAAGAGACTGGAGCTCCCATCACTGAGACCCGGAAGAAGATTTGGCTTGTGGACTCCA 1321
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1245 CGAAAGAGACTGGAGCTCCCATCGCTGAGACCCGGAAGAAGATTTGGCTTGTGGACTCCA 1304
Query 1322 AGGGACTGATTGTTAGCTCACGCAAAGAATCTCTTCAGCACTTCAAGCAGCCATGGGCAC 1381
|||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 1305 AGGGACTGATCGTTAGCTCGCGCAAAGAATCTCTTCAGCACTTCAAGCAGCCATGGGCGC 1364
Query 1382 ATGAGCACAAACCTGTGAAGGACCTCATTGGTGCTGTTAATGCAATCAAGCCAACCGTTC 1441
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1365 ATGAGCATGAACCTGTGAAGGACCTCATTGGTGCTGTTAATGCAATCAAGCCAACCGTTC 1424
Query 1442 TCATTGGAACATCCGGTGTGGGTCAGACTTTCACAAAAGAAGTTGTCGAGGCCATGGCTA 1501
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1425 TTATTGGAACATCCGGTGTGGGTCAGACTTTCACAAAAGAAGTTGTCGAGGCCATGGCTA 1484
Query 1502 CCAACAACGAGAAACCGTTGATTCTTGCTCTCTCAAACCCTACTTCTCAAGCTGAGTGTA 1561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1485 CCAACAACGAGAAACCGTTGATTCTTGCTCTCTCAAACCCTACTTCTCAAGCTGAGTGTA 1544
Query 1562 CTGCTGAACAGGCTTACACATGGACCAAGGGTCGTGCAATCTTTGGAAGTGGAAGCCCAT 1621
| || || ||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1545 CCGCAGAGCAGGCTTACACATGGACCAAGGGTCGTGCGATCTTTGGAAGTGGAAGCCCGT 1604
Query 1622 TTGATCCTGTTGTGTACGATGGCAAAACCTACTTGCCTGGCCAGGCAAACAATTGCTACA 1681
|||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1605 TTGATCCTGTTGAGTACGATGGCAAAACCTACTTGCCTGGCCAGGCAAACAACTGTTACA 1664
Query 1682 TTTTCCCTGGTCTGGGTCTTGGTTTGATCATGTCTGGGGCAATTCGTGTCCGTGATGACA 1741
||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1665 TTTTCCCGGGTCTGGGTCTTGGTTTGATCATGTCCGGTGCAATTCGTGTCCGTGATGACA 1724
Query 1742 TGCTCCTCGCAGCTTCTGAAGCATTGGCCGCACAAGTGACAGAAGAGCATTACGCCAATG 1801
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 1725 TGCTCCTCGCAGCTTCTGAAGCATTGGCCGCACAAGTCACAGAAGAGCATTTCGCCAATG 1784
Query 1802 GTCTGATCTACCCGCCATTCTCAAACATCAGAGAGATCTCTGCTAACATTGCAGCCTGTG 1861
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1785 GTCTGATCTACCCGCCATTCTCAAATATCAGAGAGATCTCTGCTAACATTGCAGCCTGTG 1844
Query 1862 TCGCCGCCAAAACCTATGACCTCGGATTGGCGTCGAACCTGCCACGTGCAAAGGATCTTG 1921
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1845 TCGCCGCCAAAACCTATGACCTCGGATTGGCGTCGAACCTGCCACGTGCAAAGGATCTTG 1904
Query 1922 TCAAGTTTGCAGAGAGCAGCATGTACAGCCCTGTGTACAGAAACTACCGTTAAAAAAGTT 1981
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1905 TGAAGTTTGCAGAGAGCAGCATGTACAGCCCTGTGTACAGAAACTACCGTTAAAAAAGTT 1964
Query 1982 TTGTTGAAGAAA-CCTGCAGATTATACTATTCACAACCCTTGA-TAGTTTCTTAAGGCTT 2039
|||||||||||| |||||||||| | |||||||||||||| || ||||| ||||||||||
Sbjct 1965 TTGTTGAAGAAAACCTGCAGATTCTTCTATTCACAACCCT-GAATAGTT-CTTAAGGCTT 2022
Query 2040 GTATTTAAgtttttt 2054
||||| |||||||||
Sbjct 2023 GTATTGAAGTTTTTT 2037
> Ahg489440 jgi|Araly1|489440|fgenesh2_kg.6__2574__AT5G25880.1
Length=1327
Score = 1040 bits (563), Expect = 0.0
Identities = 837/969 (86%), Gaps = 19/969 (2%)
Strand=Plus/Plus
Query 1018 GGAGA-GAAAGTGTTGGTTCAGTTTGAAGATTTTGCAAACCACAATGCGTTTGACCTTTT 1076
||||| ||||||| | | |||||||||||||||||||||||| |||||||||| ||| |
Sbjct 264 GGAGAGGAAAGTGAT-G--CAGTTTGAAGATTTTGCAAACCACCATGCGTTTGAGCTTCT 320
Query 1077 GTCTAAGTACAGTGAT--AGCCATCTTGTCTTCAATGACGATATCCAGGGT-ACTGCATC 1133
||||||||| || | || ||||| || |||||||| |||||||| || ||||||||
Sbjct 321 CTCTAAGTAC--TGCTCCAGTCATCTCGTTTTCAATGATGATATCCA-AGTAACTGCATC 377
Query 1134 CGTGGTGCTTGCTGGGCTTATTGCCGCTCAGAAGGTGCTTGGTAAAAAACTGGCTGACCA 1193
||||| ||||| ||||||||||| |||||||| || |||||||||| || ||||||||
Sbjct 378 AGTGGTTCTTGCCGGGCTTATTGCGGCTCAGAAAGTACTTGGTAAAAGCCTAGCTGACCA 437
Query 1194 TACCTTCCTGTTCTTGGGTGCCGGAGAGGCTGGAACCGGTATCGCTGAGCTAATTGCTCT 1253
||| || |||||||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct 438 TACTTTTTTGTTCTTGGGGGCTGGAGAGGCTGGAACCGGAATCGCTGAGCTAATTGCTCT 497
Query 1254 TAAGATTTCGAAAGAGACTGGAGCTCCCATCACTGAGACCCGGAAGAAGATTTGGCTTGT 1313
||| |||||||||||||||||| || ||| ||||||||||||||||||||||||||||
Sbjct 498 TAAAATTTCGAAAGAGACTGGAAAACCAATCGCTGAGACCCGGAAGAAGATTTGGCTTGT 557
Query 1314 GGACTCCAAGGGACTGATTGTTAGCTCACGCAAAGAATCTCTTCAGCACTTCAAGCAGCC 1373
|||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||
Sbjct 558 GGACTCCAAGGGACTGATCGTTAGCTCGCGCAAAGAATCTCTTCAGCATTTCAAGCAGCC 617
Query 1374 ATGGGCACATGAGCACAAACCTGTGAAGGACCTCATTGGT-GCTGTTAATGCAATCAAGC 1432
|||||| ||||||||||| || || ||||||||| |||| |||||||||||||||||||
Sbjct 618 ATGGGCGCATGAGCACAAGCCCGTCAAGGACCTC-TTGGGAGCTGTTAATGCAATCAAGC 676
Query 1433 CAACCGTTCTCATTGGAACATCCGGTGTGGGTCAGACTTTCACAAAAGAAGTTGTCGAGG 1492
|||||||||| ||||||||||||||||||||| |||| ||||| || ||||| || ||||
Sbjct 677 CAACCGTTCTTATTGGAACATCCGGTGTGGGTAAGACATTCACTAAGGAAGTAGTGGAGG 736
Query 1493 CCATGGCTACCAACAACGAGAAACCGTTGATTCTTGCTCTCTCAAACCCTACTTCTCAAG 1552
||||||| ||| ||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 737 CCATGGCCACCTTGAACGAGAAACCATTGATTCTTGCTCTCTCAAACCCAACTTCTCAAG 796
Query 1553 CTGAGTGTACTGCTGAACAGGCTTACACATGGACCAAGGGTCGTGCAATCTTTGGAAGTG 1612
| ||||| || || ||| | |||||||||||||||||||||||||||||||||| |||||
Sbjct 797 CCGAGTGCACAGCGGAAGAAGCTTACACATGGACCAAGGGTCGTGCAATCTTTGCAAGTG 856
Query 1613 GAAGCCCATTTGATCCTGTTGTGTACGATGGCAAAACCTACTTGCCTGGCCAGGCAAACA 1672
||||||| ||||| ||||||| ||| |||||||||| | | ||||||||||||||||||
Sbjct 857 GAAGCCCGTTTGACCCTGTTGAGTATGATGGCAAAAAATTCATGCCTGGCCAGGCAAACA 916
Query 1673 ATTGCTACATTTTCCCTGGTCTGGGTCTTGGTTTGATCATGTCTGGGGCAATTCGTGTCC 1732
| |||||||||||||| ||||| |||||||||||||||||||| || || || ||||| |
Sbjct 917 ACTGCTACATTTTCCCGGGTCTCGGTCTTGGTTTGATCATGTCCGGTGCCATACGTGTTC 976
Query 1733 GTGATGACATGCTCCTCGCAGCTTCT--G-AAGCATTGGCCGCACAAGTGACAGAAGAGC 1789
| ||||||||||| |||||||||| | | |||| ||||| | |||||||||||||||
Sbjct 977 GCGATGACATGCTTCTCGCAGCTTGTAAGGAAGCGCTGGCCTCCCAAGTGACAGAAGAGA 1036
Query 1790 ATTACGCCAATGG-TCTGATCTACCCGCCATTCT-CAAACATCAGAGAGATCTCTGCTAA 1847
||| ||| || || | ||||||| ||||| || | ||||||||||| ||||||| |||||
Sbjct 1037 ATTTCGCTAACGGAT-TGATCTATCCGCCTTT-TGCAAACATCAGAAAGATCTCAGCTAA 1094
Query 1848 CATTGCAGCCTGTGTCGCCGCCAAAACCTATGACCTCGGATTGGCGTCGAACCTGCCACG 1907
|||||||||| |||| | ||||||||||| || || ||| |||| ||||| ||||| ||
Sbjct 1095 CATTGCAGCCAGTGTGGGAGCCAAAACCTACGAACTAGGACTGGCATCGAATCTGCCTCG 1154
Query 1908 TGCAAAGGATCTTGTCAAGTTTGCAGAGAGCAGCATGTACAGCCCTGTGTACAGAAACTA 1967
| | ||||| || || ||| | ||||||||| |||||||||| ||||| ||||||||||
Sbjct 1155 TCCTAAGGACCTCGTAAAGATGGCAGAGAGCTGCATGTACAGTCCTGTCTACAGAAACTT 1214
Query 1968 CCGTTAAAA 1976
|||||||||
Sbjct 1215 CCGTTAAAA 1223
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81894026750
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5