BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G11680.1

Length=1039
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg940647 jgi|Araly1|940647|scaffold_601191.1                       1064    0.0  


> Ahg940647 jgi|Araly1|940647|scaffold_601191.1
Length=668

 Score = 1064 bits (576),  Expect = 0.0
 Identities = 634/662 (96%), Gaps = 3/662 (0%)
 Strand=Plus/Plus

Query  176  TTGATCAATCTGAATTGCAGTTCATGGCGCTAAACCCTCAATTACTACCCAATGGGATGC  235
            |||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||| |
Sbjct  1    TTGATCAATCTGAACTGCAGTTCATGGCGCTAAACCCTCAATTGCTAACCAATGGGATAC  60

Query  236  CTGTTCCCTTTGTTAATGAAATGTTCGTCCTAGTCCGAGATGGTGTTGAGTTTGAAGTCG  295
            || ||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||
Sbjct  61   CTATTCCCTTTGTTAATGAAATGTTCGTTCTAGTCAGAGATGGTGTTGAGTTTGAGGTCG  120

Query  296  ACAAGATCCCTGGAGGGCATGGAGGTCATGTTAAGGCCAAGGGGGTGATTTACTTGTCTA  355
            ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct  121  ACAAGATCCCTGGAGGGCATGGAGGTCATGTTAAGGCTAAGGGAGTGATTTACTTGTCTA  180

Query  356  ATATACGGATGGTCTTTGTTTCAAGCAAGCCTGTTGACAACTTTGTTGCTTTTGACATGC  415
            |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct  181  ATATACGGATGGTCTTTGTTGCTAGCAAGCCTGTTGACAACTTTGTTGCTTTTGACATGC  240

Query  416  CCCTGCTTTACATCCATGCCGAGAAATTTAATCAGCCAATATTTCACTGCAACAATAT-T  474
            ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct  241  CCCTGCTTTACATTCATGCCGAGAAATTCAATCAGCCAATATTTCACTGCAACAATATCT  300

Query  475  GCTGGACAAGTGGAGCCTGTGGTGCCAGAAAATGAGCATAGAGCTCTATATTCAACACAC  534
             ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  301  -CTGGACAAGTGGAGCCTGTGGTGCCAGAAAACGAGCATAGAGCTCTATATTCAACACAC  359

Query  535  AGTTTCAAGATCCTATTTAAGGAAGGTGGTTGTGGGACATTTGTTCCTCTCTTCTTGAAT  594
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  360  AGTTTCAAGATCCTATTTAAGGAAGGTGGTTGCGGGACATTTGTTCCTCTCTTCTTGAAT  419

Query  595  CTCATATCATCAGTGAGACAATACAACAGACAAATGCAACAAGCAGCAGAAGCAGCAGCG  654
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  420  CTCATATCATCAGTGAGACAATACAATAGACAAATGCAACAAGCAGCAGAAGCAGCAGCG  479

Query  655  GCAGCTCCTCATGTTGATCCTCTTCAAGCCGCTCAGACACCTGTGGACGAAATGATGAGA  714
            |||||||| | ||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct  480  GCAGCTCCACGTGTTGATCCTCTTCAAGCCGCTCAGACCCCTGTAGACGAAATGATGAGA  539

Query  715  CATGCGTACGTGGACCCTAATGATCCAACGAGGATATATCTGCAACAGCCATCAGGGGAA  774
            ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct  540  CATGCGTACGTGGACCCTAATGATCCAACGAGGATATATTTGCAGCAGCCATCAGGGGAA  599

Query  775  TCTCAGTTGAGGCGTAGAGCTTACCATTCGGGTGCGGCGGAACATTGAGATACACGGaaa  834
            |||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||
Sbjct  600  TCTCAGTTGAGGCGGAGAGCTTACCATTCGGGTGCAGCGGAACATTGAGATACACG-AAA  658

Query  835  aa  836
            ||
Sbjct  659  AA  660



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 38656637838


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5