BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G11690.1

Length=856
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg940648 jgi|Araly1|940648|scaffold_601192.1                        425    2e-118


> Ahg940648 jgi|Araly1|940648|scaffold_601192.1
Length=437

 Score =  425 bits (230),  Expect = 2e-118
 Identities = 360/421 (86%), Gaps = 15/421 (4%)
 Strand=Plus/Plus

Query  269  ATGGACACTAAGAAGAAATCTAAGGAACATGGCCTATACCGTATAGTCAAT-GCTATCGG  327
            ||||||||  ||||||||||| ||||||||||||| |||| |||||||||| | || |||
Sbjct  21   ATGGACACCCAGAAGAAATCTGAGGAACATGGCCTTTACCATATAGTCAATAG-TACCGG  79

Query  328  TTATGCATTTGGAGCGGGAGCTGTTGGAGGTTCTGTATATCATTTCGTGAGAGGGGCATA  387
            |  ||||||||||||||| ||||||||||||||||||||||||||| | | |||| ||||
Sbjct  80   TGGTGCATTTGGAGCGGGCGCTGTTGGAGGTTCTGTATATCATTTCATAAAAGGGTCATA  139

Query  388  CAATTCCCCAATAGGTGCTCGATATGTTGGAGGAACACAAGCGGCT-AGCATGAATGCTC  446
            ||||||||||||||||||||| | |||||||||||||||||||| | | |||||| ||||
Sbjct  140  CAATTCCCCAATAGGTGCTCGTTTTGTTGGAGGAACACAAGCGG-TGACCATGAACGCTC  198

Query  447  CTCGCTTGGGAGGCACTTTTGCTGTATTTGGAGGATTGCTCTCAACATTTGACTATGCAT  506
            |||| |||||||||| |||||||| ||||||||||||| | || ||||||||||| ||| 
Sbjct  199  CTCGTTTGGGAGGCAGTTTTGCTGCATTTGGAGGATTGTTTTCCACATTTGACTACGCAA  258

Query  507  TGGTGCGCATCAGGAAGAAGGAAGATCCATGGAACTCCATCGTAGCGGGTGCTGCTACAG  566
            ||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct  259  TGGTGTGCATCAGGAAGAAGGAAGATCCATGGAACTCGATCGTAGCAGGTGCTGCTACAG  318

Query  567  GTGGAGTTCT-GTCTATCCGAAAAGGGGTTGTTGCAGCTTCAACATCAGCGGTTATGTTT  625
            | ||| |||| | | || |||   ||| ||||||||||||||||||||||||||||| | 
Sbjct  319  GAGGACTTCTTG-CAATGCGACGTGGGATTGTTGCAGCTTCAACATCAGCGGTTATGGTA  377

Query  626  GGtttttt-tttGGCTGT-ACTCAAC---CCTCCGTTCGGGAGCAAGTAAGCTTTT-TGG  679
            ||  |||| |||| || | | | ||    ||| |||| | || ||||||||||||| |||
Sbjct  378  GGGGTTTTGTTTG-CTTTGA-TGAAAGGGCCTGCGTT-GTGAACAAGTAAGCTTTTCTGG  434

Query  680  G  680
            |
Sbjct  435  G  435



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31680144027


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5