BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G11710.1
Length=2192
Score E
Sequences producing significant alignments: (Bits) Value
Ahg325696 jgi|Araly1|325696|fgenesh1_pm.C_scaffold_6000916 1404 0.0
> Ahg325696 jgi|Araly1|325696|fgenesh1_pm.C_scaffold_6000916
Length=1722
Score = 1404 bits (760), Expect = 0.0
Identities = 813/838 (97%), Gaps = 6/838 (1%)
Strand=Plus/Plus
Query 164 ATGGATTTCATGAAGGTCTTCGATCAAACTGTTCGAGAGATAAAAAGGGAGGTGAATCTG 223
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1 ATGGATTTCATGAAGGTCTTCGATCAAACGGTTCGAGAGATAAAGAGGGAGGTGAATCTG 60
Query 224 AAAGTTTTGAAGGTCCCTGAGATGGAGCAAAAGGTATTGGATGCTACAGATAATGAGCCT 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAAGTTTTGAAGGTCCCTGAGATGGAGCAAAAGGTATTGGATGCTACAGATAATGAGCCT 120
Query 284 TGGGGTCCCCATGGTACTGCATTGGCAGAGATAGCTCAGGCCACGAAGAAATTCTCGGAG 343
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 121 TGGGGTCCCCATGGTACTGCATTGGCAGAGATAGCACAGGCCACGAAGAAATTCTCGGAG 180
Query 344 TGCCAGATGGTTATGAGTGTTTTGTGGACTAGACTAAGTGAGACAGGAAAAGATTGGCGA 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TGCCAGATGGTTATGAGTGTTTTGTGGACTAGACTAAGTGAGACAGGAAAAGATTGGCGA 240
Query 404 TATGTCTACAAGGCATTGGCTGTTATTGATTATCTGATTTCGAATGGATCAGAACGAGCG 463
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 241 TATGTCTACAAGGCATTGGCTGTTATCGATTATCTGATTTCAAATGGATCAGAACGAGCG 300
Query 464 GTTGATGAGATTATTGAGCATACTTACCAAATATCTTCACTCACAAGTTTTGAGTATGTT 523
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 301 GTTGATGAGATTATTGAGCATACGTACCAAATATCTTCACTCACGAGTTTTGAGTATGTT 360
Query 524 GAACCAAATGGGAAA-GATGTGGGAATCAACGTGAGAAAGAAGGCGGAAAACATAGTCGC 582
||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 361 GAACCAAAT-GGAAAGGATGTGGGAGTCAACGTGAGAAAGAAGGCGGAAAACATAGTCGC 419
Query 583 TCTTTTAAATAATAAAGAGAAAATCTCAGAAATCAGAGACAAAGCAGTAGCAAATCGTAA 642
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TCTCTTGAATAATAAAGAGAAAATCTCAGAAATCAGAGACAAAGCAGTAGCAAATCGTAA 479
Query 643 CAAGTATGTTGGCCTCTCATCAACGGGAATAACATATAAATCTGGTTCCTCAGCTTCATT 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CAAGTATGTTGGCCTCTCATCAACGGGAATAACATATAAATCTGGTTCCTCAGCTTCATT 539
Query 703 TGGTGGTAGTTTTCAAAGTGGTTCAAGCAATTTTGACAGCTACAAGGATAGAG-ATTCCA 761
||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||
Sbjct 540 TGGTGGTAGTTTTCAAAGTGGTTCAAGCAATCATGACAGCTACAAGGATA-AGGATTCCA 598
Query 762 GAGAAGACAAGAATGACTACGAGTCTTTTCAAAAGTCAAGACGTGGTGTTAAAA-CTGAG 820
||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 599 GAGAAGAGAAGAATGACTACGAGTCTTTTCAAAAGTCAAGACGTGGTGTTAAAAGC-GAG 657
Query 821 GAGCAAAGCTACACTTCTAAGAAGAGTTTTTCACGCTATGGCAGCACGGACCATGACAAT 880
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 658 GAGCAAAGCTACACTTCTAAGAAGAGTTTTTCACGTTATGGCAGCACGGACCATGACAAT 717
Query 881 CTATCCAGTGGTAAAAAGTCACCCGATTCTGCCAAACATAGGTCATATGTATCTGCAGCT 940
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 718 CTATCCAGTGGAAAAAAGTCACCCGATTCTGCCAAACATAGTTCATATGTATCTGCAGCT 777
Query 941 CCTTCAAACAACGATGATGATTTTGATGATTTTGATCCACGGGGAACTTCCAGTAATA 998
||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||
Sbjct 778 CCTTCAAACAACGATGATGATTTCGATGATTTTGATCCACGTGGAACTTCCAGCAATA 835
Score = 1277 bits (691), Expect = 0.0
Identities = 790/836 (94%), Gaps = 14/836 (2%)
Strand=Plus/Plus
Query 1012 CAGTGCCAACCAAGTGGACCTTTTTGGAGGAGATCTGATTGGTGACTTCTTGGATTCTGG 1071
||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 900 CAGTGCCAAACAAGTGGACCTTTTTGGAGGGGATCTGATTGGTGACCTCTTGGATTCTGG 959
Query 1072 GCCAACAGAAACATCTTCCACCAACAACAACGAGAACTTTCAAGAGGCGGACTTGTTTGC 1131
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 960 GCCAACAGAAACATCTTCCACCAACAACAACGAGAATTTTCAAGAGGCGGACTTGTTTGC 1019
Query 1132 TGATGCAGCTTTTGTATCAGCCTCGGCTCAGGGAGCTGAATTTGGGTCACAGACACAGAA 1191
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1020 TGATGCAGCTTTTGTATCAGCCTCGGCTCAGGGAACTGAATTTGGGTCACAGACACAGAA 1079
Query 1192 ACAAGTTGATCTTTTCTCTGCGTCTGAACCTTCTGTCACAGTTTCTTCAGCTCCTCCGAC 1251
| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1080 AGAGGTTGATCTTTTCTCTGCGTCTGAACCTTCTTTCACAGTTTCTTCAGCTCCTCCGAC 1139
Query 1252 GGTTGATCTCTTTGCATCTTCTGAATCAGTTGTAAGCCCAGAAGCCAAGATATC-AATAC 1310
||||||||| |||||||||||||||||||||| ||||||||||||||||||||| || ||
Sbjct 1140 GGTTGATCTTTTTGCATCTTCTGAATCAGTTGCAAGCCCAGAAGCCAAGATATCTAA-AC 1198
Query 1311 CTGAGTCTATGGCTACTCCCAACATTGTTGACCCATTTGCTGCAGTTCCTATGGATAATT 1370
| ||||||||| | | |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1199 CCGAGTCTATGACAAATCCCAACATTGTTGACCCTTTTGCTGCAGTTCCTATGGATAATT 1258
Query 1371 TTGATGGATCAGATCCTTTTGGTGCCTTCACTTCCCACTCGGCTTCAGTTTCTACAGGTC 1430
|||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1259 TTGATGGATCTGATCCTTTTGGTGCCTTCACTTCCCACTCAGCTTCAGTCTCTACAGGTC 1318
Query 1431 CACAAGCTCCAAGTGTACATGGGAGTGCAACAAACACCACAAGCCCGCTGTCTTTCGCAG 1490
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1319 CACAAGCTCCAAGTGTACATGGGAGTGCAACAAACACCACAAGCCCGCTGTCTTTGGCAG 1378
Query 1491 ACTCGAAGCCACAACATTTGCAAAAGAAAGATCCTTTCCAGGTGAAATCAGGAATTTGGG 1550
||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 1379 GCTCGAAGCCACAACACTTGCAAAAGAAAGATCCTTTCCAGGTGAAATCTGGAGTTTGGG 1438
Query 1551 CAGATTCGCTGAGCCGTGGACTGATTGATCTCAATATAACTGCTCCCAAAAAAGCTTCTC 1610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 CAGATTCGCTGAGCCGTGGACTGATTGATCTCAATATAACTGCTCCCAAAAAAGCTTCTC 1498
Query 1611 TAGCTGATGTGGGTGTTGTGGGGGATCTGAGCAATGAAGATGGGAACAAAGCATCTGCTG 1670
||||||||||||| |||||||| |||||||||||||| || |||||||||||||||||||
Sbjct 1499 TAGCTGATGTGGGCGTTGTGGGTGATCTGAGCAATGATGAAGGGAACAAAGCATCTGCTG 1558
Query 1671 CATCGTACTACTCAGGCTGGTCCATGGGTGCAGGATCCGGGCTTGGTAAAACTGGCCTAT 1730
||||||||||||||||||||||||||||| ||||||||||||| |||||||| || ||||
Sbjct 1559 CATCGTACTACTCAGGCTGGTCCATGGGTACAGGATCCGGGCTCGGTAAAACCGGTCTAT 1618
Query 1731 ACAGTACACAGCAGCAGCAGcaacaacaacaacaacaacaaGCACCTGATATCTCAGACG 1790
||||| ||| ||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1619 ACAGT-----GCA-CAGCAGCAACAACAACAACAA------GCACCTGATATCTCAGATG 1666
Query 1791 ATTTCTTCTCCAGCCTCAGTAACCAAAGGTACCAATCTGGTGGCTTTAAGCAGTGA 1846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1667 ATTTCTTCTCCAGCCTCAGTAACCAAAGGTACCAATCTGGTGGCTTTAAGCAGTGA 1722
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82503470670
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5