BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G11720.1
Length=2856
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940652 jgi|Araly1|940652|scaffold_601196.1 4313 0.0
> Ahg940652 jgi|Araly1|940652|scaffold_601196.1
Length=2761
Score = 4313 bits (2335), Expect = 0.0
Identities = 2619/2756 (95%), Gaps = 19/2756 (1%)
Strand=Plus/Plus
Query 7 GTCCAACACCAAAATAAAAAATGTCATCTCTTCACTGGTTTCCCAATATCTTCATCGTTG 66
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1 GTCCAACACCAAAATAAAAAATGTCATCTCTTCACTGGTTTCCCAATTTCTTCATCGTTT 60
Query 67 TCGTCGTCTTCTTCTCCT----T-G-A---GAAGTTCACAAGTTGTACTAGAAGAAGAAG 117
|||||||||||||||||| | | | |||| |||||||||||||||||||||||||
Sbjct 61 TCGTCGTCTTCTTCTCCTCACATGGAAGCGGAAGCTCACAAGTTGTACTAGAAGAAGAAG 120
Query 118 AATCCACAGTCGTTGGATACGGCTACGTCGTTAGATCAGTGGGCGTTGATTCTAACCGGC 177
|| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 121 AAGCCACAGTCGTTGGATACGGCTACGTCGTTAGATCAGTGGCCGTTGATTCTAACCGGC 180
Query 178 AAGTTTTGACGGCGAAGCTTGATCTGATAAAACCATCGTCCGTTTACGCACCAGATATTA 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AAGTTTTGACGGCGAAGCTTGATCTGATAAAACCATCGTCCGTTTACGCACCAGATATTA 240
Query 238 AATCGCTTAA-TCTTCATGTCAGCTTGGAGACAAGTGAGCGTTTGAGAATCAGAATCACA 296
|||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 241 AATCGC-TAAGTCTTCATGTCAGCTTGGAGACGAGTGAGCGTTTGAGAATCAGAATCACA 299
Query 297 GACTCTAGTCAACAAAGATGGGAGATACCGGAAACCGTTATTCCTCGTGCCGGAAACCAC 356
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GATTCTAGTCAACAAAGATGGGAGATACCGGAAACCGTTATTCCTCGTGCCGGAAACCAC 359
Query 357 TCTCCTCGCCGTTTCTCAACGGAGGAAGACGGAGGAAACTC-TCCGGAGAACAATTTCTT 415
|||||||||||||||| ||||||||||||||||||||| || | ||||||||||||||||
Sbjct 360 TCTCCTCGCCGTTTCTTAACGGAGGAAGACGGAGGAAAATCGT-CGGAGAACAATTTCTT 418
Query 416 AGCAGATCCCTCATCGGACTTGGTTTTCACTCTCCACAACACGACGCCGTTTGGTTTCTC 475
||||||||| ||||||||||| |||||||| |||||||||||||||||||| ||||||||
Sbjct 419 AGCAGATCCTTCATCGGACTTAGTTTTCACACTCCACAACACGACGCCGTTCGGTTTCTC 478
Query 476 CGTCTCCCGACGTTCCTCCGGCGATATCCTCTTCGACACATCGCCGGATTC-ATCAGATT 534
|||||||||||| |||||||||||||||||||||||||||||||| || || ||||||||
Sbjct 479 CGTCTCCCGACGCTCCTCCGGCGATATCCTCTTCGACACATCGCC-GAATCAATCAGATT 537
Query 535 CAAACACTTACTTCATCTTCAAAGACCAATTCCTTCAACTATCATCCGCGTTACCGGAAA 594
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 538 CAAACACTTACTTCGTCTTCAAAGACCAATTCCTTCAACTATCTTCCGCGTTACCGGAAA 597
Query 595 ACAGATCGAATCTGTACGGAATCGGAGAGCACACGAAGCGATCGTTCAGGCTAATTCCCG 654
||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||
Sbjct 598 ACAGATCGAATCTGTACGGTCTCGGAGAGCACACGAAGCGATCGTTCAAGCTAATTTCCG 657
Query 655 GTGAGACCATGACTTTGTGGAACGCCGACATCGGCAGCGAAAATCCGGATGTCAACCTTT 714
|||| || |||||| ||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 658 GTGATACAATGACTCTGTGGAACGCCGACATCGGCAGCGAGAATCCGGATGTTAACCTTT 717
Query 715 ACGGATCGCACCCGTTTTACATGGATGTAAGAGGATCAAAGGGAAACGAGGAAGCAGGGA 774
|||||||||||||||||||||||||||||||||||||||| || | || ||||||||||
Sbjct 718 ACGGATCGCACCCGTTTTACATGGATGTAAGAGGATCAAACGGCCATGAAGAAGCAGGGA 777
Query 775 CGACTCATGGGGTTCTCTTGCTGAACAGCAATGGAATGGATGTGAAGTATGAAGGACATC 834
||||||| || ||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 CGACTCACGGCGTTTTGTTGCTGAACAGCAATGGAATGGATGTGAAGTATGAAGGACATC 837
Query 835 GGATAACTTACAATGTGATTGGAGGCGTCATTGATCTCTATGTGTTCGCGGGACCATCGC 894
|||| ||||||||||||||||||||||| |||||||||||||||||| | ||||||||||
Sbjct 838 GGATTACTTACAATGTGATTGGAGGCGTAATTGATCTCTATGTGTTCACCGGACCATCGC 897
Query 895 CGGAGATGGTCATGAATCAGTACACTGAGCTTATTGGAAGACCTGCCCCTATGCCTTACT 954
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 CAGAGATGGTGATGAATCAGTACACTGAGCTTATTGGAAGACCTGCCCCTATGCCTTACT 957
Query 955 GGTCATTTGGATTTCACCAATGTAGATATGGGTACAAGAATGTATCAGACCTTGAATATG 1014
||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||| ||
Sbjct 958 GGTCATTTGGATTTCACCAGTGTAGGTATGGGTACAAGAATGTTTCAGACCTTGAATCTG 1017
Query 1015 TAGTTGATGGATATGCAAAAGCTGGAATACCTCTTGAGGTGATGTGGACTGACATTGATT 1074
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1018 TAGTTGATGGATATGCAAAAGCTGGAATACCTCTTGAGGTTATGTGGACTGACATTGATT 1077
Query 1075 ACATGGATGGGTACAAAGACTTCACTTTGGATCCTGTAAATTTCCCGGAGGACAAGATGC 1134
|||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1078 ACATGGATGGCTACAAAGACTTCACTTTGGATCCCGTGAATTTCCCGGAGGACAAGATGA 1137
Query 1135 AATCATTTGTCGATACACTTCACAAGAATGGTCAGAAATACGTGCTGATCTTGGATCCCG 1194
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1138 AATCATTTGTCGATACACTTCACAAGAGCGGTCAGAAATACGTGCTGATCTTGGATCCCG 1197
Query 1195 GTATTGGTGTGGATAGCTCTTATGGGACATATAATAGAGGAATGGAAGCTGATGTTTTCA 1254
|||||||||||||||||||||| ||||| ||||| |||||||||||||| ||||||||||
Sbjct 1198 GTATTGGTGTGGATAGCTCTTACGGGACCTATAACAGAGGAATGGAAGCGGATGTTTTCA 1257
Query 1255 TAAAAAGAAATGGTGAGCCTTATCTTGGTGAGGTTTGGCCCGGAAAAGTATACTTCCCCG 1314
| ||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||
Sbjct 1258 TCAAAAGAAATGGTGAGCCTTATCTCGGTGAGGTTTGGCCCGGGAAAGTATACTACCCCG 1317
Query 1315 ACTTCTTGAATCCAGCTGCTGCAACTTTCTGGAGCAACGAAATCAAGATGTTCCAGGAGA 1374
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1318 ACTTCTTGAATCCAGCTGCTGCAACTTTCTGGAGCAACGAAATCAAGATGTTCCAGGACA 1377
Query 1375 TTCTCCCTTTGGATGGTCTGTGGATTGACATGAATGAGTTATCAAATTTCATAACTTCGC 1434
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1378 TTCTCCCTTTGGATGGTCTGTGGATTGACATGAATGAGTTATCAAATTTCATAACTTCAC 1437
Query 1435 CTCTATCCTCTGGATCTTCACTCGATGATCCTCCTTACAAGATCAACAATTCAGGGGATA 1494
|||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1438 CTCTATCCCCTGAATCTTCACTCGATGATCCTCCTTACAAGATCAACAATTCAGGGGACA 1497
Query 1495 AAAGGCCGATAAACAATAAGACAGTACCCGCAACATCTATCCATTTTGGAAACATTAGTG 1554
|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1498 AAAGACCGATAAACAATAAGACAGTACCCGCAACATCTATCCATTTTGGAAACGTTAGTG 1557
Query 1555 AATACGATGCGCATAACTTGTATGGGCTCTTGGAAGCTAAAGCCACTCACCAAGCTGTGG 1614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1558 AATACGATGCGCATAACTTGTATGGGCTCTTGGAAGCTAAAGCCACTCACCAAGCTGTGG 1617
Query 1615 TGGATATAACGGGAAAGAGACCGTTTATTTTGTCAAGATCCACGTTTGTAAGCTCGGGGA 1674
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1618 TGGATATAACAGGAAAGAGACCGTTTATTTTGTCGAGATCCACGTTTGTAAGCTCGGGGA 1677
Query 1675 AATACACGGCTCACTGGACTGGTGATAATGCTGCAAAATGGGAGGATTTGGCTTACTCAA 1734
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1678 AATACACGGCTCACTGGACTGGTGATAATGCTGCAAAATGGGAGGATTTGGCTTATTCAA 1737
Query 1735 TCCCCGGAATCCTCAACTTTGGCCTGTTTGGGATTCCAATGGTTGGAGCTGATATTTGC- 1793
|||||||||||||||| ||||| || ||||||||||||||||||||||||||||| |||
Sbjct 1738 TCCCCGGAATCCTCAATTTTGGTCTATTTGGGATTCCAATGGTTGGAGCTGATATCTGCG 1797
Query 1794 GGTTTCTCACATGATACCACCGAGGAATTATGCCGTCGATGGATCCAGCTTGGAGCTTTT 1853
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1798 GGTTT-TCACATGATACCACCGAGGAATTATGCCGTCGATGGATCCAGCTTGGAGCTTTT 1856
Query 1854 TACCCTTTTGCAAGAGACCATTCGTCCCTTGGTACCGCCAGACAAGAACTATACCTCTGG 1913
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1857 TACCCTTTTGCAAGAGACCATTCGTCCCTTGGTACCGCCAGACAAGAACTATACCTCTGG 1916
Query 1914 GATTCAGTTGCTTCTTCTGCAAGAAAGGTTCTCGGCCTCAGAATGAGACTGCTCCCACAT 1973
||||| ||||||||||||||||||||||||||||||||| | |||||| |||||||||||
Sbjct 1917 GATTCGGTTGCTTCTTCTGCAAGAAAGGTTCTCGGCCTCCGTATGAGATTGCTCCCACAT 1976
Query 1974 CTCTACACATTGATGTATGAGGCTCATGTCAGCGGCAACCCAATCGCGCGCCCGCTCTTC 2033
||||||||||||||||| ||||| ||||||||||||||||| |||||||| || ||||||
Sbjct 1977 CTCTACACATTGATGTACGAGGCCCATGTCAGCGGCAACCCGATCGCGCGACCACTCTTC 2036
Query 2034 TTCTCATTTCCTCAAGACACTAAAACCTATGAGATTGATTCCCAGTTCTTGATTGGTAAA 2093
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2037 TTCTCATTTCCTCGAGACACTAAAACCTATGACATTGATTCCCAGTTCTTGATTGGTAAA 2096
Query 2094 AGCATAATGGTTTCTCCAGCGCTGAAGCAAGGGGCGGTAGCAGTGGATGCATATTTCCCT 2153
| ||||||||||||||| ||||||||||||||| |||| || ||||||||||||||||||
Sbjct 2097 AACATAATGGTTTCTCCTGCGCTGAAGCAAGGGACGGTGGCTGTGGATGCATATTTCCCT 2156
Query 2154 GCTGGAAATTGGTTCGATCTTTTTAACTATTCCTTTGCCGTTGGTGGAGATTCTGGCAAG 2213
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2157 GCTGGAAACTGGTTCGATCTTTTTAACTATTCCTTTGCCGTTGGTGGAGATTCTGGCAAG 2216
Query 2214 CACGTTAGACTTGATACTCCCGCTGATCACGTCAACGTTCATGTTCGAGAAGGTAGCATT 2273
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2217 CACTTTAGGCTTGATACTCCCGCTGATCACGTCAACGTTCATGTTCGAGAAGGTAGCATT 2276
Query 2274 GTGGCTATGCAAGGAGAGGCATTGACGACTAGGGACGCCAGAAAGACACCGTATCAGCTT 2333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2277 GTGGCTATGCAAGGAGAGGCATTGACGACTAGGGACGCCAGAAAGACACCGTATCAGCTT 2336
Query 2334 CTAGTTGTAGCCAGCCGGCTTGAGAACATCTCCGGCGAACTGTTTCTTGATGACGGAGAA 2393
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 2337 CTAGTTGTAGCCAGCCGGCTTGAGAACATCTCCGGTGAACTGTTTCTCGATGACGGAGAA 2396
Query 2394 AATTTACGGATGGGAGCTGGAGGAGGAAACCGTGATTGGACCCTTGTTAAGTTCCGGTGC 2453
|| |||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 2397 AACGTACGGATGGGAGCTGGAGGAGGAAACCGTGATTGGACCCTCGTGAAGTTCCGGTGC 2456
Query 2454 TAT-GTGACCGGAAAATCCGTTGTACTGAGATCAGAAGTGGTGAACCCAGAGTATGCGTC 2512
| | ||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 2457 T-TCGTGACAGGAAAATCCGTGGTACTGAGATCAGAAGTGGTGAACCCAGAGTACGCGTC 2515
Query 2513 GAAAATGAAATGGAGCATCGGGAAAGTGACGTTTGTTGGGTTCGAGAACGTGGAGAACGT 2572
|||||||| ||||||||||| |||||||||||||||||||||||||||||| |||| |||
Sbjct 2516 GAAAATGAGATGGAGCATCGAGAAAGTGACGTTTGTTGGGTTCGAGAACGTAGAGAGCGT 2575
Query 2573 GAAAACGTACGAGGTTAGGACAAGTGAGAGATTGAGGAGTCCTAGAATCTCTCTTATAAA 2632
||||||||||||||||||||||||||||||||| |||||||| ||||||||||| || ||
Sbjct 2576 GAAAACGTACGAGGTTAGGACAAGTGAGAGATTAAGGAGTCCGAGAATCTCTCTAATTAA 2635
Query 2633 GACGGTTTCGGACAATGATGATCCGAGGTTTCTAAGTGTGGAGGTTTCTAAACTGTCGTT 2692
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2636 GACGGTTTTGGACAATGATGATCCGAGGTTTCTCAGTGTGGAGGTTTCTAAACTGTCGTT 2695
Query 2693 ACTTGTTGGGAAGAAGTTCGAAATGAGACTGAGATTGACTTGAAGAAGTATATAAA 2748
|||||||| ||||||||||| |||||| |||||||||||| |||| |||||||||
Sbjct 2696 GCTTGTTGGAAAGAAGTTCGAGATGAGATTGAGATTGACTTAAAGAGGTATATAAA 2751
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107795393350
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5