BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G11730.1 Length=2053 Score E Sequences producing significant alignments: (Bits) Value Ahg940653 jgi|Araly1|940653|scaffold_601197.1 1786 0.0 Ahg942179 jgi|Araly1|942179|scaffold_602723.1 808 0.0 Ahg351610 jgi|Araly1|351610|fgenesh1_pg.C_scaffold_6002203 787 0.0 > Ahg940653 jgi|Araly1|940653|scaffold_601197.1 Length=1204 Score = 1786 bits (967), Expect = 0.0 Identities = 1127/1205 (94%), Gaps = 7/1205 (1%) Strand=Plus/Plus Query 633 AGCTTTTGGTAGTGTTAAGGATGCAGAATAGGATTGTACAGTTGGAAGAAGGAAAAGAAA 692 |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 AGCTTTTGTTAGTCTTAAGGATGCAGAATAGGATTGTACAGTTGGAAGAAGGAAAAGAAA 60 Query 693 ATGGAA-T-C-ACAGTTCGATCAGGGCATTATAAAGGATTTCCATCGAAACTGCTACTTC 749 |||||| | | | |||||||||||||| ||||| |||||||| ||||||||||| |||| Sbjct 61 ATGGAATTCCGATTGTTCGATCAGGGCAGTATAAGGGATTTCCGTCGAAACTGCTGCTTC 120 Query 750 TGCTAGGGTTGTTTCTTACATTTTCTGTTACTGTCTTCATCATTAGTGTATCTACTATCA 809 || ||||||| |||||| | ||||||||||||||||||||||||||||||||||| |||| Sbjct 121 TGTTAGGGTTTTTTCTTGCTTTTTCTGTTACTGTCTTCATCATTAGTGTATCTACAATCA 180 Query 810 AGTATACTGGAATACAAAGTGTAGTAACCACAGTCACTTCAAGCTTTGTGCCATGCCGTG 869 |||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||| | Sbjct 181 AGTATACTGGTATACAAAGTGTAGTAACCACAGTGACTTCAAGCTTTGTACCATGCCGCG 240 Query 870 AGGGGGAACCGAATAGTTTGAGTAAATGGATACAACCTCCTGCGGTTTTGATGCATAACA 929 ||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 241 AGGATGAACCGAATAGTTTGAGTAAATGGATACAGCCTCCTGCGGTTCTGATGCATAACA 300 Query 930 TGAGCGATGAAGAGCTTCTTTGGCGTGCTTCTTTTTGGCCTCGTAGAAAAGAATATCCGT 989 |||||||||||||||| |||||||||||||||||||||||||| || ||||||||||| | Sbjct 301 TGAGCGATGAAGAGCTCCTTTGGCGTGCTTCTTTTTGGCCTCGGAGGAAAGAATATCCCT 360 Query 990 TTAAACGGGTTCCAAAGGTTGCGTTTATGTTCTTGACTAAAGGCCCCTTACCGCTTGCT- 1048 ||||||| ||||| ||| |||||||||||||||| |||||||||||||| ||||||||| Sbjct 361 TTAAACGAGTTCCGAAGATTGCGTTTATGTTCTTAACTAAAGGCCCCTTGCCGCTTGCTA 420 Query 1049 TCGCTTTGGGAGAGGTTCTTGAAGGGTCACAAAGGGCTTTACTCGGTTTACCTTCATCCA 1108 | |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| Sbjct 421 T-GCTTTGGGAGAGGTTCTTAAAGGGTCATAAAGGGCTTTACTCGGTTTACCTTCATCCC 479 Query 1109 CACCCTTCTTTTACAGCCAAGTTTCCAGCTAGCTCTGTTTTCCACCGGAGGCAAATTCCA 1168 ||||| |||||||||||||| |||||| |||||||||||||| |||||||||| || || Sbjct 480 CACCCATCTTTTACAGCCAAATTTCCATCTAGCTCTGTTTTCTACCGGAGGCAGATACCG 539 Query 1169 AGCCAGGTTGCAGAATGGGGGAGAATGTCCATGTGCGATGCAGAGAAGCGGCTTCTTGCC 1228 ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||| Sbjct 540 AGCCAGGTTGCAGAATGGGGGAGAATGTCTATGTGTGATGCAGAGAAGCGGCTTCTCGCC 599 Query 1229 AACGCCCTGCTTGATGTGTCCAACGAATGGTTTGTTCTCGTCTCAGAGTCATGCATTCCA 1288 ||||| ||||| ||| | |||||||||||||||||||||||||||||||||||||||||| Sbjct 600 AACGCGCTGCTCGATATCTCCAACGAATGGTTTGTTCTCGTCTCAGAGTCATGCATTCCA 659 Query 1289 CTCTACAACTTCACAACCATTTACAGCTACTTAAGCCGATCAAAACACAGCTTCATGGGT 1348 |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 660 CTCTTCAACTTCACAACCATCTACAGCTACTTAAGCCGATCAAAACACAGCTTCATGGGT 719 Query 1349 GCTTTTGATGACCCTGGACCGTTTGGGCGTGGCCGCTACAACGGGAACATGGAACCTGAA 1408 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 720 GCTTTTGATGACCCTGGACCGTTTGGGCGTGGCCGCTACAACGGGAACATGGAACCTGAA 779 Query 1409 GTTCCCCTTACCAAATGGCGAAAAGGGTCTCAATGGTTTGAGGTTAACCGGGACCTGGCA 1468 ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||| Sbjct 780 GTTCCCCTTTCCAAATGGCGAAAAGGGTCTCAATGGTTTGAGGTTAACAGGGACCTCGCA 839 Query 1469 GCTACCATTGTCAAAGACACATTGTATTACCCGAAATTCAAAGAGTTCTGCAGGCCTGCT 1528 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 840 GCTACCATTGTCAAAGACACATTGTATTACCCGAAATTCAAAGAGTTCTGCCGGCCTGCG 899 Query 1529 TGCTATGTGGACGAGCATTACTTCCCAACAATGTTGACGATTGAGAAACCAACAGTCTTG 1588 ||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||| Sbjct 900 TGCTATGTGGACGAGCATTACTTCCCAACGATGTTGACAATTGAGAAACCAACGGTCTTG 959 Query 1589 GCTAACCGGAGCTTGACATGGGTGGACTGGTCGAGGGGCGGTCCCCACCCAGCTACGTTT 1648 |||||||| ||||||||||||||||||||||||||||| || |||||||||||||| ||| Sbjct 960 GCTAACCGAAGCTTGACATGGGTGGACTGGTCGAGGGGAGGGCCCCACCCAGCTACATTT 1019 Query 1649 GGGCGATCGGACATTACAGAAAACTTCTTTGGAAAA-ATCTTTGATGGAAGAAACTGCAG 1707 |||||||| ||||||||||| || ||||||| ||| ||||||||||||||||||||||| Sbjct 1020 GGGCGATCTGACATTACAGAGAAGTTCTTTG-AAAGGATCTTTGATGGAAGAAACTGCAG 1078 Query 1708 TTACAATGGTCGCAACACTTCCATGTGTTATCTCTTTGCGAGGAAGTTTGCTCCGAGTGC 1767 |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| | Sbjct 1079 TTACAATGGTGGCAACACTTCCATGTGTTATCTCTTTGCAAGGAAGTTTGCTCCGAGTAC 1138 Query 1768 TTTGGAGCCTTTGCTTCACATTGCTCCCAAGATTCTTGGATTTTGAGTAGTTTAGTTATG 1827 | ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| Sbjct 1139 TCTGGAGCCTTTGCTTCACATTGCTCCCAAGGTTCTTGGATTTTGAGTAGTTTAGTAATG 1198 Query 1828 TCTCT 1832 ||||| Sbjct 1199 TCTCT 1203 > Ahg942179 jgi|Araly1|942179|scaffold_602723.1 Length=1201 Score = 808 bits (437), Expect = 0.0 Identities = 961/1207 (80%), Gaps = 63/1207 (5%) Strand=Plus/Plus Query 642 TAGTGTTAAGGATGCAGAATAGGATTGTACAGTTGGAAGAAGGAAAAGAAAATGGAATCA 701 ||||| |||||||||||| |||| || | |||||||||||||| ||||| | || | | | Sbjct 11 TAGTG-TAAGGATGCAGAGTAGGGTTATTCAGTTGGAAGAAGGTAAAGATATTGTAGTTA 69 Query 702 CAGTTCGATCAGGG-C--ATTATA-AAGG-ATTTCC-ATCGAAACTGCTACTTC-TGCTA 754 | | || | ||| | || | |||| ||||| || || | || | || ||||| Sbjct 70 C-GGGCG-GCCGGGCCGGGCTAAATAAGGCGTTTCCTTTC-AAGTTACTTC-TCTTGCTA 125 Query 755 GGGTTGTTTCTTA-CATTTT-CTGTTACTGTCTTCATCATTAGTGTATCTACTA-TCAAG 811 || || |||| || | |||| ||||| | | ||| ||||||||||||| || | ||||| Sbjct 126 GGATTTTTTC-TAGC-TTTTACTGTTGTTTTGTTCTTCATTAGTGTATCCAC-ATTCAAG 182 Query 812 TA-TACTGGAATACAA-AGTGTAGTAACCACAGTCACTTCAAGCTTTGTGCCATGCCGTG 869 || || |||||| ||| |||||||| || ||||||| || || |||||||| |||| | Sbjct 183 TATTA-TGGAAT-CAATAGTGTAGTGACTTCAGTCACGTCTAGTTTTGTGCCTTGCCACG 240 Query 870 AG-GGGGAACCGAATAGTTTGAGTAAATGGA-TACAACCTCCTGCGGTTTTGATGCATAA 927 || ||| || || || | |||||||| || |||||||| |||| | |||||||| Sbjct 241 AGAAAAGAAACG-AT--CTTCA-TAAATGGATTA-AACCTCCTATGGTTCTCATGCATAA 295 Query 928 CATGAGCGATGAAGAGCTTCTTTGGCGTGCTTCTTT-TTGGCCT-CGTAGAAAAGAATAT 985 |||||||||||||| |||||||||||||| ||||| | |||| | || ||||| ||| Sbjct 296 TATGAGCGATGAAGAACTTCTTTGGCGTGCGTCTTTCAT-GCCTAAG-AGGAAAGAGTAT 353 Query 986 CCGTTTAA-ACGGGTTCC-AAAGGTTGCGTTTATGTTCTTGACTAA-AGGCCCCTTACCG 1042 |||||||| | |||| || ||| | ||||||||||||||||| || || || || ||| Sbjct 354 CCGTTTAATA-GGGTGCCGAAA-ATCGCGTTTATGTTCTTGAC-AATGGGTCCTTTGCCG 410 Query 1043 CTTGCTTCGCTTTGGGAGAGGTTCTTGAAGGGTCACAAAG-GGCTTTACTCGGTTTACCT 1101 ||||| |||||||||| ||||| || |||||||| || || ||| || |||||| | Sbjct 411 CTTGCACCGCTTTGGGAAAGGTTATTAAAGGGTCA-TGAGAAGCATTATTCAGTTTACAT 469 Query 1102 TCATCCACACCCT-TC-TTTTACAGCCAAGTTTCCAGCTAGCTCTGTTTTCCACCGGAGG 1159 ||| || || | || | || ||||||||||||||||| |||||||||| |||| ||| Sbjct 470 CCATTCA-ACAGTATCGTCTT-CAGCCAAGTTTCCAGCTTCCTCTGTTTTCTACCGTAGG 527 Query 1160 CAAATTCCAAGCCAGGTTGCAGAATGGGGGAGAATGTCCATGTGCGATGCAGAGAAGCGG 1219 || || ||||| ||||||||||||||||| |||||| | |||||||||||||||| |||| Sbjct 528 CATATACCAAGTCAGGTTGCAGAATGGGGAAGAATGACAATGTGCGATGCAGAGAGGCGG 587 Query 1220 CTTCTTGCCAACGCCCTGCTTGATGTGTCCAACGAATGGTTTGTTCTCGTCTCAGAGTCA 1279 ||||||||||| || || || ||| | || |||||||||||||||||| |||| |||||| Sbjct 588 CTTCTTGCCAATGCGCTACTCGATATCTCAAACGAATGGTTTGTTCTCCTCTCCGAGTCA 647 Query 1280 TGCATTCCACTCTACAACTTCACAACCATTTACAGC-TACTTAAGCC-GATCAAAACACA 1337 |||||||| |||| |||||||||||| || |||| | ||| ||| || |||||| |||| Sbjct 648 TGCATTCCCCTCTTCAACTTCACAACTATCTACA-CTTACATAA-CCAAATCAAAGCACA 705 Query 1338 GCTTCATGGGTGCTTTTGATGACCCTGGACCGTTTGGGCGTGGCCGCTACAACGGGAACA 1397 |||| |||||| | |||||||| ||| | || | ||| || ||||||||| |||| |||| Sbjct 706 GCTTTATGGGTTCATTTGATGATCCTAGTCCCTATGGCCGAGGCCGCTACCACGGCAACA 765 Query 1398 TGGAACCTGAAGTTCCCCT-TACCAAATGGCGAAAAGGGTCTCAATGGTTTGAGGTTAAC 1456 ||| ||||||||| || | ||| ||||| ||||||||||||||||||||||||||||| Sbjct 766 TGGCCCCTGAAGTTTCCATAAACC-AATGGAGAAAAGGGTCTCAATGGTTTGAGGTTAAC 824 Query 1457 CGGGACCTGGCAGCTACCATTGTCAAAGACACATTGTATTACCCGAAATTCAAAGAGTTC 1516 ||||| || || | | ||||||||||||| || ||||||||||| ||||||||| |||| Sbjct 825 CGGGAGCTTGCGGTTTCCATTGTCAAAGATACCTTGTATTACCCTAAATTCAAACAGTTT 884 Query 1517 TGCAGGCCTGCTTGCTATGTGGACGAGCATTACTTCCCAACAATGTTGACGATTGAGAAA 1576 || | |||||||| || |||||||||||||| ||||||||||||||||| ||||||||| Sbjct 885 TGTAAACCTGCTTGTTACGTGGACGAGCATTATTTCCCAACAATGTTGACAATTGAGAAA 944 Query 1577 CCAACAGTCTTGGCTAACCGGAGCT-TGACATGGGTGGACTGGTCGAGGGGCGGTCCCCA 1635 || | | |||||| || || || | |||| ||||| ||||||||||| || ||| |||| Sbjct 945 CCGGCGGCCTTGGCCAATCGAAG-TGTGACTTGGGTCGACTGGTCGAGAGGTGGTGCCCA 1003 Query 1636 CCCAGCTACGTTTGG-GCGATCG-GACATTACAGAAAACTTCTTTGGAAAAAT-CTTTGA 1692 ||||||||| ||||| || | | ||||| | || | ||||||| | | || | Sbjct 1004 CCCAGCTACATTTGGAGC-A-CAAGACATCAGTGAGGAGTTCTTTGCATGGGTTCTCAAA 1061 Query 1693 TGGAAGA-AACTGCAGTTACAATGGTCGCAACACTTCCATGTGTTATCTCTTTGCGAGGA 1751 || || ||||||| |||||||||| || |||| |||||||||||||||||||| || | Sbjct 1062 -GGT-GATAACTGCACTTACAATGGTGGCTACACATCCATGTGTTATCTCTTTGCTAGAA 1119 Query 1752 AGTTTGCTCCGAGTGCTTTGGAGCCTTTGCTTCACATTGCTCCCAAGATTCTTG-GATTT 1810 ||||| ||||||||||||| ||||||||| |||| ||||||||||||||||| | | ||| Sbjct 1120 AGTTTTCTCCGAGTGCTTTAGAGCCTTTGATTCAAATTGCTCCCAAGATTCT-GAGTTTT 1178 Query 1811 TGAGTAG 1817 ||||||| Sbjct 1179 TGAGTAG 1185 > Ahg351610 jgi|Araly1|351610|fgenesh1_pg.C_scaffold_6002203 Length=1161 Score = 787 bits (426), Expect = 0.0 Identities = 876/1088 (81%), Gaps = 51/1088 (5%) Strand=Plus/Plus Query 750 TGCTAGGGTTGTTTCTTA-CATTTT-CTGTTACTGTCTTCATCATTAGTGTATCTACTA- 806 ||||||| || |||| || | |||| ||||| | | ||| ||||||||||||| || | Sbjct 101 TGCTAGGATTTTTTC-TAGC-TTTTACTGTTGTTTTATTCTTCATTAGTGTATCCAC-AT 157 Query 807 TCAAG-TATACTGGAATACAA-AGTGTAGTAACCACAGTCACTTCAAGCTTTGTGCCATG 864 ||||| | || |||||| ||| |||||||| || ||||||| || || |||||||| || Sbjct 158 TCAAGTTTTA-TGGAAT-CAATAGTGTAGTGACTTCAGTCACGTCTAGTTTTGTGCCTTG 215 Query 865 CCGTGAG-GGGGAACCGAATAGTTTGAGTAAATGGATACAACCTCCTGCGGTTTTGATGC 923 || ||| ||| || || || | ||||||||| |||||||| |||| | |||| Sbjct 216 CCACGAGAAAAGAAACG-AT--CTTCA-TAAATGGATTGAACCTCCTATGGTTCTCATGC 271 Query 924 ATAACATGAGCGATGAAGAGCTTCTTTGGCGTGCTTCTTT-TTGGCCTCGTAGA--AAAG 980 |||| |||||||||||||| |||||||||||||| ||||| | |||| ||| |||| Sbjct 272 ATAATATGAGCGATGAAGAACTTCTTTGGCGTGCGTCTTTCAT-GCCT--AAGACGAAAG 328 Query 981 AATATCCGTTTAA-ACGGGTTCC-AAAGGTTGCGTTTATGTTCTTGACTAA-AGGCCCCT 1037 | | ||||||||| | |||| || ||| | ||||||||||||||||| || || || | Sbjct 329 AGTTTCCGTTTAATA-GGGTGCCGAAA-ATCGCGTTTATGTTCTTGAC-AATGGGTCCTT 385 Query 1038 TACCGCTTGCTTCGCTTTGGGAGAGGTTCTTGAAGGGTCACAAAG-GGCTTTACTCGGTT 1096 | |||||||| |||||||||| ||||| || |||||||| || || ||| || ||| Sbjct 386 TGCCGCTTGCACCGCTTTGGGAAAGGTTATTAAAGGGTCA-TGAGAAGCATTATTCAGTT 444 Query 1097 TACCTTCATCCACACCCT-TCTT-TTACAGCCAAGTTTCCAGCTAGCTCTGTTTTCCACC 1154 ||| | ||| ||| | | |||| || |||||||||||| |||| |||||||||| ||| Sbjct 445 TACATCCATTCAC-CAGTATCTTCTT-CAGCCAAGTTTCAAGCTTCCTCTGTTTTCTACC 502 Query 1155 GGAGGCAAATTCCAAGCCAGGTTGCAGAATGGGGGAGAATGTCCATGTGCGATGCAGAGA 1214 | ||||| || ||||| ||||||||||||||||| |||||| | |||||||||||||||| Sbjct 503 GTAGGCATATACCAAGTCAGGTTGCAGAATGGGGAAGAATGACAATGTGCGATGCAGAGA 562 Query 1215 AGCGGCTTCTTGCCAACGCCCTGCTTGATGTGTCCAACGAATGGTTTGTTCTCGTCTCAG 1274 ||||||||||||||| || || || ||| | || |||||||||||||||||| |||| | Sbjct 563 GGCGGCTTCTTGCCAATGCGCTACTCGATATCTCAAACGAATGGTTTGTTCTCCTCTCCG 622 Query 1275 AGTCATGCATTCCACTCTACAACTTCACAACCATTTACAGC-TACTTAAGCC-GATCAAA 1332 ||||||||||||| |||| |||||||||||| || |||| | ||| ||| || |||||| Sbjct 623 AGTCATGCATTCCCCTCTTCAACTTCACAACTATCTACA-CTTACATAA-CCAAATCAAA 680 Query 1333 ACACAGCTTCATGGGTGCTTTTGATGACCCTGGACCGTTTGGGCGTGGCCGCTACAACGG 1392 |||||||| |||||| | |||||||| ||| | || | ||| || ||||||||| |||| Sbjct 681 GCACAGCTTTATGGGTTCATTTGATGATCCTAGTCCATATGGCCGAGGCCGCTACCACGG 740 Query 1393 GAACATGGAACCTGAAGTTCCCCT-TACCAAATGGCGAAAAGGGTCTCAATGGTTTGAGG 1451 ||||||| ||||||||| || | ||| ||||| |||||||||||||||||||||||| Sbjct 741 CAACATGGCCCCTGAAGTTTCCATAGACC-AATGGAGAAAAGGGTCTCAATGGTTTGAGG 799 Query 1452 TTAACCGGGACCTGGCAGCTACCATTGTCAAAGACACATTGTATTACCCGAAATTCAAAG 1511 |||||||||| || |||| | ||||||||||||| || ||||||||||| ||||||||| Sbjct 800 TTAACCGGGAGCTTGCAGTTTCCATTGTCAAAGATACCTTGTATTACCCTAAATTCAAAC 859 Query 1512 AGTTCTGCAGGCCTGCTTGCTATGTGGACGAGCATTACTTCCCAACAATGTTGACGATTG 1571 |||| || | |||||||| || |||||||||||||| ||||||||||||||||| |||| Sbjct 860 AGTTTTGTAAACCTGCTTGTTACGTGGACGAGCATTATTTCCCAACAATGTTGACAATTG 919 Query 1572 AGAAACCAACAGTCTTGGCTAACCGGAGCT-TGACATGGGTGGACTGGTCGAGGGGCGGT 1630 ||||||| | | |||||| ||||| || | |||| ||||| ||||||||||| || ||| Sbjct 920 AGAAACCGGCGGCCTTGGCCAACCGAAG-TGTGACTTGGGTCGACTGGTCGAGAGGTGGT 978 Query 1631 CCCCACCCAGCTACGTTTGG-GCGATCG-GACATTACAGAAAACTTCTTTGGAAAAAT-C 1687 ||||||||||||| ||||| || | | ||||| | || | ||||||| | | | Sbjct 979 GCCCACCCAGCTACATTTGGAGC-A-CAAGACATCAGTGAGGAGTTCTTTGCATGGGTTC 1036 Query 1688 TTTGATGGAAGA-AACTGCAGTTACAATGGTCGCAACACTTCCATGTGTTATCTCTTTGC 1746 | | || || ||||||| |||||||||| || |||| |||||||||||||||||||| Sbjct 1037 TCAAA-GGT-GATAACTGCACTTACAATGGTGGCTACACATCCATGTGTTATCTCTTTGC 1094 Query 1747 GAGGAAGTTTGCTCCGAGTGCTTTGGAGCCTTTGCTTCACATTGCTCCCAAGATTCTTG- 1805 || |||||| ||||||||||||| ||||||||| |||| ||||||||||||||||| | Sbjct 1095 TAGAAAGTTTTCTCCGAGTGCTTTAGAGCCTTTGATTCAAATTGCTCCCAAGATTCT-GA 1153 Query 1806 GATTTTGA 1813 | |||||| Sbjct 1154 GTTTTTGA 1161 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 77208926615 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5