BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G11740.1

Length=542
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg488011 jgi|Araly1|488011|fgenesh2_kg.6__1145__AT5G11740.1         494    3e-139


> Ahg488011 jgi|Araly1|488011|fgenesh2_kg.6__1145__AT5G11740.1
Length=479

 Score =  494 bits (267),  Expect = 3e-139
 Identities = 435/507 (86%), Gaps = 48/507 (9%)
 Strand=Plus/Plus

Query  35   TCTCTCTTTATCTCTCACAACAAA-------A-TCTTTGAAATGGCGATCTCTAAGGCTT  86
            ||||||||||||||||||||||||       | | |||||||||||||||||||||||||
Sbjct  1    TCTCTCTTTATCTCTCACAACAAATCTCTTTACTATTTGAAATGGCGATCTCTAAGGCTT  60

Query  87   CCATTGTTGTTCTCATGATGGTGATTATCTCCGTCGTTGCATCGGCACAATCTGAGGCAC  146
            ||||||||||||||||||||||||| |||||||||||||| || || |||||||||||||
Sbjct  61   CCATTGTTGTTCTCATGATGGTGATCATCTCCGTCGTTGCTTCAGCTCAATCTGAGGCAC  120

Query  147  CAGCACCAAGTCCTACTTCTGGATCTAGTGCGATCTCAGCGTCTTTCGTGTCAGCTGGAG  206
            |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct  121  CAGCACCAAGTCCTACATCTGGATCTAGTGCGATCTCAGCGTCTTTCGTGTCAGCTGGTG  180

Query  207  TTGCAGCAGTCGCGGCTCTTGTTTTTGGCTCAGCTCTTCGGATCTAAGTTACTGTGATGG  266
            |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct  181  TTGCAGCAGTCGCGGCCCTTGTTTTTGGCTCTGCTCTTCGGATCTAAGTTACTGTGATGG  240

Query  267  TGATTTCGTACAGAGATTGTTTTTGCGGTATAGGCCATTCATCATTATTCGTCGTCTCGT  326
            ||||||||||||||||||||||||||   ||      | |          ||||||||||
Sbjct  241  TGATTTCGTACAGAGATTGTTTTTGC---AT------T-C----------GTCGTCTCGT  280

Query  327  GTGTATTCCGAAGCAGCTTATAGATCTCATTTTCTATTTGTCCCTCTTCTTCTTCGTTTT  386
            |||||||||   | |||||||||||||||||| ||||||| || |||||| |||| |   
Sbjct  281  GTGTATTCCTCCGAAGCTTATAGATCTCATTT-CTATTTGGCC-TCTTCTGCTTC-TAC-  336

Query  387  CTATCTTAATCTTCATATCTGTATGAGGATAT--T-ACTATTTCTTTTT-AGAGTATTTG  442
            || ||  |||| ||||||||||||||||||||  | | ||||||||||  ||||||||||
Sbjct  337  CT-TC--AATCCTCATATCTGTATGAGGATATCATTATTATTTCTTTTAGAGAGTATTTG  393

Query  443  TGGTTTTGTGATTTTCTAGACGATTTCTTAGT-T-A--T--GCGATATGGTTTTTGATAT  496
            |||||| ||||||||||||||||||| ||| | | |  |  | |||||||||||||||||
Sbjct  394  TGGTTT-GTGATTTTCTAGACGATTTATTATTATTAGATATGTGATATGGTTTTTGATAT  452

Query  497  GATAT--GAATCTTATTCTATTTATTT  521
            |||||  | ||||||||||||||||||
Sbjct  453  GATATATGGATCTTATTCTATTTATTT  479



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19764595102


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5