BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G11750.1
Length=1089
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940659 jgi|Araly1|940659|scaffold_601203.1 1079 0.0
Ahg929459 jgi|Araly1|929459|scaffold_301916.1 185 5e-46
> Ahg940659 jgi|Araly1|940659|scaffold_601203.1
Length=718
Score = 1079 bits (584), Expect = 0.0
Identities = 682/727 (94%), Gaps = 16/727 (2%)
Strand=Plus/Plus
Query 94 TCGATTCCTCTTACGGAGAAATGCAATCGATTCGTAGCAGTACAAGGTTGCTTCAGAGGC 153
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 TCGATTCCTCTTGCGGAGAAATGCAATCGATTCGTGGCAGTACAAGGTTGCTTCAGAGGC 60
Query 154 ATCGTTTCTCCATCTCCAACACTCTTCGTTTCActtcttcttcttcttcttctGGAAGCT 213
|||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||
Sbjct 61 ATCGTTTCTCCATCTCCAACACTCTTCGTTTCACTTCTTCTTCTACTTCGTGTGGAAGCT 120
Query 214 GGTCTGAAAATGAATCGAGGATGG-TAGGATTTGATTCTTTCCCTTGTACCAGAGCTGCG 272
|||||||||||||||| |||| || |||| |||||||||||||||||||| |||||||||
Sbjct 121 GGTCTGAAAATGAATCAAGGA-GGCTAGGGTTTGATTCTTTCCCTTGTACTAGAGCTGCG 179
Query 273 ACATATCTCATTAGCTCGTTGAAAAATGTCGGTTTTTCCTCTTCGGCGATACCTAAACAA 332
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 180 ACATATCTCATTAGCTCGTTGAAAAATGTCGGGTTTTCCTCTTCGGCAATACCTAAACAA 239
Query 333 GACTTTAAGTATTCGTTGAGGTGCTTTTCTACTACCGGAGATTCTGTTCAATCTACTCCT 392
||||||| |||||||| ||||| ||||| || || |||||||||| | |
Sbjct 240 GACTTTACGTATTCGTCAAGGTGTTTTTCCACCACTGGAGATTCTG----------T--T 287
Query 393 CAAGGATCCCCTGAGTCAGATTGTGTTGTGCCTCAGAGAATCAAGTTTAAGCGGCTTGAT 452
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 288 CAAGGATCCCCTGAGACAGATTGTGTTGTGCCTCAGAGAATCAAGTTTAAGCGGCTTGAT 347
Query 453 AAAACCGCTAAGCATATAATGCAGATTGTAGACAAGGAGGCAGTTGAGGAAGTGAGAAAT 512
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 348 AAAACGGCTAAGCATATAATGCAGATTGTAGACAAGGAGGCAGTTGAGGAAGTGAGAACT 407
Query 513 CTTAGAGAGATTCCAGAGATAAAGCCTGGTTACATTGTTCAGCTTAAAGTGGAAGTGCCT 572
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 408 CTTAGAGAGATTCCAGAGATAAAGCCTGGTTACATTGTGCAGCTAAAAGTGGAAGTGCCT 467
Query 573 GAGAACAAGAGGCGTGTATCAATAGTAAAAGGCGTTGTCATAGCAAGGCGTAATGCTGGT 632
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 468 GAGAACAAGAGGCGTGTATCTATTGTAAAAGGCGTTGTCATAGCAAGGCGTAATGCTGGT 527
Query 633 CTTAACTCAACATTTAGAATTAGAAGGCTTGTCGCTGGAGTGGGCGTTGAATCCATGTTC 692
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 528 CTTAACTCAACATTTAGAATTAGAAGGCTTGTGGCTGGAGTGGGCGTTGAATCCATGTTC 587
Query 693 CCCTTGTATTCCCCAAACCTGAGGGAGATTAAGGTGGTGGACAAGAAGAAAGTAAGAAGA 752
|| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 588 CCTTTGTATTCCCCAAACCTGAGGGAGATTAAGGTGTTGGACAAGAAGAAAGTAAGAAGA 647
Query 753 GCCAAGCTCTATTACCTCAGGGACAAGGTGAATGCTCTCAAGAAGCATTAACAA-CCATA 811
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 648 GCCAAGCTTTATTACCTCAGGGACAAGGTGAATGCTCTCAAGAAGCATTAACAAACCTTA 707
Query 812 -TAAAAA 817
||||||
Sbjct 708 ATAAAAA 714
> Ahg929459 jgi|Araly1|929459|scaffold_301916.1
Length=356
Score = 185 bits (100), Expect = 5e-46
Identities = 110/115 (96%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 563 GGAAGTGCCTGAGAACAAGAGGCGTGTATCAATAGTAAAAGGCGTTGTCATAGCAAGGCG 622
||||||||||||||||||||| ||| ||||||| ||||||||||||||||||| ||||||
Sbjct 131 GGAAGTGCCTGAGAACAAGAGACGTTTATCAATCGTAAAAGGCGTTGTCATAGTAAGGCG 190
Query 623 TAATGCTGGTCTTAACTCAACATTTAGAATTAGAAGGCTTGTCGCTGGAGTGGGC 677
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 191 TAATGCTGGTCTTAACTCAACATTTAGAATTAGAAGGCTTGTCGGTGGAGTGGGC 245
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40562783688
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5