BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G11760.1

Length=840
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg940660 jgi|Araly1|940660|scaffold_601204.1                        268    4e-71


> Ahg940660 jgi|Araly1|940660|scaffold_601204.1
Length=484

 Score =  268 bits (145),  Expect = 4e-71
 Identities = 263/316 (83%), Gaps = 23/316 (7%)
 Strand=Plus/Plus

Query  119  TGATTTTTTAATATTGCATCAAAATGTC------GAAGAAGAGGAAGGCTCGTAGCGGCT  172
            ||||||||||| ||||||||||||||||      |||||||| |||| |||||||||| |
Sbjct  1    TGATTTTTTAA-ATTGCATCAAAATGTCTAATAAGAAGAAGAAGAAGACTCGTAGCGGTT  59

Query  173  ACTTGAAGAAGTCATCACAAGGAGGAGACGAAGCTGTGGTACAGCGAAGAAAACTAGTTC  232
            ||||||||||||||||||||||||||||| || ||| | |||||| ||| ||||||||||
Sbjct  60   ACTTGAAGAAGTCATCACAAGGAGGAGACAAACCTGAGATACAGCCAAGGAAACTAGTTC  119

Query  233  CAAAACCTGGTAAAATTGGGAAAGAGATTGATGATATCTTTGCTGGGAG-ATCTCAGAGG  291
            |||||||||||||| |||||||||||||||||||||||||| ||||| | || |||||||
Sbjct  120  CAAAACCTGGTAAATTTGGGAAAGAGATTGATGATATCTTTACTGGG-GTATATCAGAGG  178

Query  292  ACGCCAGAGGTCCAAAATCCCGAGTCGAGAGACACGCCAGAAGCCCAAGTATCCGAGTCG  351
            |||||||||||||||  |||||||||||||||   |  ||| ||  | | ||  |   | 
Sbjct  179  ACGCCAGAGGTCCAAGTTCCCGAGTCGAGAGAG--GTTAGA-GCAGA-G-ATT-G---CA  229

Query  352  AGAGACACTAGAGCTGA-GATGAATGAGCTCAATGTTGGGGTCAATAACAACACTGAAAG  410
            | ||| |  ||||  || || ||||||||| ||| ||| ||||||||||||||| |||||
Sbjct  230  A-AGA-AGAAGAG--GAAGAGGAATGAGCTTAATTTTGTGGTCAATAACAACACGGAAAG  285

Query  411  CCGACCTAGGACGAGA  426
            |||||| |||| ||||
Sbjct  286  CCGACCCAGGATGAGA  301


 Score =  172 bits (93),  Expect = 3e-42
 Identities = 123/137 (90%), Gaps = 3/137 (2%)
 Strand=Plus/Plus

Query  570  ACCCAGGAAGACAACTGAAGACGGGTTACGAGTGTTCACGGAA-AATGAAATTGGTTTCA  628
            ||||||||||| ||||  ||| ||||| ||||||| || |||| || |||||||||||||
Sbjct  346  ACCCAGGAAGAGAACTCCAGAAGGGTTTCGAGTGTACAAGGAAGAA-GAAATTGGTTTCA  404

Query  629  ACAGGAAAGATGCTGGTGGTACTCGTTTTTGTCCCTTTGACTGTTATTGTTGCTTCTAAA  688
            ||||||  |||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct  405  ACAGGACTGATGCTGGTGGTACTCGTCTTTGTCCCTTTGACTGTAATTGTTGCTTCTAAA  464

Query  689  TCTTCTTAAACCA-TTT  704
            ||||||||||||| |||
Sbjct  465  TCTTCTTAAACCAGTTT  481



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31070177355


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5