BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G11780.1
Length=1744
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488015 jgi|Araly1|488015|fgenesh2_kg.6__1149__AT5G11780.1 2418 0.0
> Ahg488015 jgi|Araly1|488015|fgenesh2_kg.6__1149__AT5G11780.1
Length=1741
Score = 2418 bits (1309), Expect = 0.0
Identities = 1613/1754 (92%), Gaps = 44/1754 (3%)
Strand=Plus/Plus
Query 16 CCTTCCAACTTCCCAAAATTCAAAATCCCTTCTCTGTCACCGGAAAATTCCCAAAATGCA 75
||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||
Sbjct 1 CCTTCCAACTTCCCAAAATTCAAAATCTCTTCTCTGTCACCGAAAAATTCCGAAAATGCA 60
Query 76 ACCTCCGATTTGTAAACCCAGACCTCAGAGTCACCTCGAATTTCTGAAACCGCTTCTCAA 135
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 61 ACCTCCGATTTGCAAACCCAGACCCCAGAGTCACCTCGAATTTCTGAAACCGCTTCTCAA 120
Query 136 TGACTCGATCAAGCAGCTCTTGTTACAGTACC-GAGGCGGACGAACCAATTTCTCCGATT 194
||||||||||||||||||| |||| ||||||| || ||||||||||||||||||||||||
Sbjct 121 TGACTCGATCAAGCAGCTCCTGTTGCAGTACCGGA-GCGGACGAACCAATTTCTCCGATT 179
Query 195 TCGACTCCATTTTCACTCGTATTCTTAACGATCTTCCCGAACCACCACCTCTCGAGCTCG 254
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 180 TCGACTCCATCTTCACTCGTATTCTTAACGATCTTCCCGAACCACCACCTCTCGAACTCG 239
Query 255 TCTGGTTCTACTCCGCCATCAGATTCTACTCTTCCAAGTTAGCTTTCCGGGATGATTCCG 314
|||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 240 TCTGGTTCTATTCCGCCATCAGATTCTACTCTTCGAAATTAGCTTTCCGGGATGATTCCG 299
Query 315 TTAGGTTAACTTCGTGTTTCTTCCAGCTGATAGTTTCGTTTTCCGATTCGTTTTCCG--- 371
|||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 300 TTAGGTTAACGTCGAGTTTCTTCCAGCTGCTAGTTTCGTTTTCCGATTCGTTTTCCGATT 359
Query 372 -G---T-----GTTAAGAAGGTATCGCTGTTATCTCCCGTTGTTTACCAGTTGAGTCGTT 422
| | |||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 360 CGTTTTCCGGCGTTAAGAAGGTAGCTCTGTTATCTCCCGTTGTTTACCAGTTGAGTCGTC 419
Query 423 TAGTTAT-TTCTAGGAGGAGAGATGCTTTGAGCTTGTTAGAAGGGATTGTGAGCTATATT 481
| ||| | ||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 420 TGGTT-TGTTCTAGGAGGAGAGACGCTTTGAGCTTGTTAGAGGGGATTGTGAGCTATATT 478
Query 482 AGCATGTACTGTGTCGATGAACCTGGAAATGAAGATGATGATGTGTTGATGGTCTCTGGG 541
||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 479 AGCATGTACTGTGTCGAGGAACCTGGAGATGAATATGATGATGTGTTGATGGTCTCTGGG 538
Query 542 TTTAGTTTTGCTGATTTGAGTCGAGTTTGGGTTGTGGATGAAGTGGAAGATAATTGTAGA 601
||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 539 TTTAGTTTTGCTGATTTGAGTCGTGTTTGGATTGTGGATGAAGTGGAAGATAATTGTAGA 598
Query 602 GTTGAGGATTGTTTGGAGGTGTTCATGCCATTTGCTAGTGAAATTTTGCGTAAAGAGATC 661
|||||||||||||||||| | ||||||||||||| |||||||| |||||||||||||||
Sbjct 599 GTTGAGGATTGTTTGGAGATCTTCATGCCATTTGTTAGTGAAACTTTGCGTAAAGAGATG 658
Query 662 GATTCTGAGTCCTGTGGCGTTGGTTACTTAGCTGGAATCGTAGCTTCTCAGGTTTTCTTG 721
||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 659 GATTCTGAGTCCTGTCGCGTTGGTTACTTAGCTGGAATCATAGCTTCTCAGGTGTTCTTG 718
Query 722 CTCAGTTTGTGCTCGAGGTTTGATTTGGACTTAGGTAGATCCGAGCTAGATAAAGATCTG 781
||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||
Sbjct 719 CTCAGTTTGTGCTCGAGGTTTGATTTGGAGTTAAGTAGATCCGAGCTAGAAAAAGATCTG 778
Query 782 CAGGAATCTGTGCTTCAGATGATATCTGGGTTCCACAGTTGCTTCTTTTTTGATGTCATT 841
| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 779 CGGGAATCTGTGCTTCAGATGATTTCTGGGTTCCACAGTTGCTACTTTTTTGATGTCATT 838
Query 842 CTCAAGA---TGCTGCTGGAGCCATATCTGCATCTAACTTCATTAATGGGAGTGGTTCCA 898
||||||| |||||||||| ||||||||||||||||||||| || | | || |||
Sbjct 839 CTCAAGATGCTGCTGCTGGAACCATATCTGCATCTAACTTCACTACT----G-GG-TCCG 892
Query 899 GAAGATGAAGCAT-TTTTAACGGAAATCATAACAGAAGCGGTGATTAAGTCAGTGGAGAA 957
||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 893 GAAGATGAAGC-TATTTTAACGGAAATCATAACAGAAGCTGTGATTAAGTCAGTGGAGAA 951
Query 958 GCTATTCCTCAACCCTGGAAATGGAACTTCACAAAGAAGTTTACACTTGAAGAACATTGC 1017
||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 952 GCTATTCTTCAACCCTGGAAATGGAACTTTGCAAAGAAGTTTACACTTGAAGAACATTGC 1011
Query 1018 TATCAACTGGTTGTTTCTTTTTGACAAGACTATGGCTTCTCTAAGGAGAAACAAAGATCA 1077
||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||| |
Sbjct 1012 TATCAACTGGTTGTTTCTTTTTGACAAGACTATGGCTTCCCTAAGGAGATATAAAGATGA 1071
Query 1078 AGAAAAAATCAGCATGTACACGAACATGTTCTCCAATTCACTTATTCCTTATCATTTGAT 1137
|||||||| ||||| ||||| ||||||||||||| |||||||||||||| | || |||||
Sbjct 1072 AGAAAAAACCAGCAGGTACATGAACATGTTCTCCTATTCACTTATTCCTCACCACTTGAT 1131
Query 1138 CAATTGGGTAATCAGTCAAGGTGAAGTGATTAGAGATGCAGACACACTAAGAAATTTGAC 1197
||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||
Sbjct 1132 CAATTGGGTAATCAGTCAAGGTGAAGTGATTAGAGATGCAGACGCACTGAGAAACTTGAC 1191
Query 1198 CCCCGCATCCTTCATTGAATGGCTTGTATCACTGGAAGAGCAAGGACCAAGGGTGTTTAA 1257
|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 1192 TCCCGCATCCTTCATTGAATGGCTTGTATCACTTGAAGAGCAAGGACTAAGGGTGTTTAA 1251
Query 1258 CTGTGACCATTCCAAAAACTACGCCA-AATCTGTGATTCACAGGTCAAGACCAGATCTCA 1316
||||||||||||||||||||| |||| || |||||||||| |||||||||||||||||||
Sbjct 1252 CTGTGACCATTCCAAAAACTATGCCAGAA-CTGTGATTCAAAGGTCAAGACCAGATCTCA 1310
Query 1317 GTATCGG-GACCACATTGCAGAAACAAGAAGAGGAGTTTGATCAAGATACAGACATGGCT 1375
|| |||| | ||||||||| ||||| | |||||||||||||||||||| |||||||||||
Sbjct 1311 GTCTCGGAG-CCACATTGCTGAAACGACAAGAGGAGTTTGATCAAGATGCAGACATGGCT 1369
Query 1376 GATGAACAAAATGTGTCATCTATCTCAATTCTCAGCAGAAACACAAGAAAGCGTAAAGAA 1435
||||| | | || ||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 1370 GATGATTACACTGCGTCATCTTTCTCAATTCTCAGCAGCAACACAAGAAAGCGTAAAGAA 1429
Query 1436 GAGAGGCATAATAAGGAGGGAGAAACGAAAGTGAAGCTCTTCAAACATAGACATAGCAAC 1495
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1430 GAGAGGGATAATAAGGAGGGAGAAACGAAAGTGAAGCTCTTCAAACATAGACACAGCAAC 1489
Query 1496 CTTCAAGAGAACTCCAAGTTTCAACCTTTTGTCTTCTCGGGTAGTTTGGTGAATGGGAGT 1555
|||| |||||||||||||||||||||||||||||||||| | |||||||||| |||| |
Sbjct 1490 ATTCAGGAGAACTCCAAGTTTCAACCTTTTGTCTTCTCGGATGGTTTGGTGAAGGGGACT 1549
Query 1556 GAGGTTGAAGTTTCAGACATGGAGCTATGAGTCTAAACCACTTGTAGTTGGTGAAATCGA 1615
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1550 GAGGTTGAAGTTTCAGACATGGAGCTATGAGTCTAAACCACTTGTAGATAGTGAAATCGG 1609
Query 1616 CTTAATAAT--CACA--TATGGTAGAGATGTAAGAATGCTGCTGAAATAATTGTTGTCTA 1671
||||||| | | || ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1610 CTTAATATTGTCTCAAATATGGTAGAGATGTAAGAATGCTGCTGAAGTAATTGTTGTCTA 1669
Query 1672 GAGATTATATAACAAGTTCACATCTGTAACAATTTAGAATCTTC--A-T--AT--CGTAA 1724
||||||||| | ||||||||| | |||||| ||||||||||||| | | || |||||
Sbjct 1670 GAGATTATA-A-CAAGTTCACTTTTGTAACTATTTAGAATCTTCGTAATTCATATCGTAA 1727
Query 1725 TGTAAACTCGTGAA 1738
||||||| ||||||
Sbjct 1728 TGTAAACCCGTGAA 1741
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65439040910
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5