BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G11800.1
Length=2231
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488017 jgi|Araly1|488017|fgenesh2_kg.6__1151__AT5G11800.1 3075 0.0
> Ahg488017 jgi|Araly1|488017|fgenesh2_kg.6__1151__AT5G11800.1
Length=2003
Score = 3075 bits (1665), Expect = 0.0
Identities = 1873/1967 (95%), Gaps = 40/1967 (2%)
Strand=Plus/Plus
Query 108 TCCGGTTTAATCCAGAACCAGTTGTTCTGCCATGGTGgaaggaa-gaagaagaagaagat 166
||||||||||||||||||||||| |||||||||||||||| ||| || |||||||||||
Sbjct 54 TCCGGTTTAATCCAGAACCAGTTCTTCTGCCATGGTGGAA-GAAGGAGGAAGAAGAAGA- 111
Query 167 tctcgctctcctctcaacagctagctctcctcttacttttactctccttcttcctctgct 226
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 112 ---AG--ATCCTCTCAACAACTAGCTCTCCTCTTACTTTTACTCTCCTTCTTCCTCTGCT 166
Query 227 tctccGTCGCGTCTCCTCGAGCTATATCTGATTCGGATCTACTGGATGAAACAGTCGCCA 286
||||||||| |||||||||||||||||||||||||||||| |||| ||| | |||||||
Sbjct 167 TCTCCGTCGTGTCTCCTCGAGCTATATCTGATTCGGATCTGTTGGAAGAATCCGTCGCCA 226
Query 287 ACTCCTCCTCTTCCGTCGCATCTCTCAACGcttcttcttcttcttctcttGTTAAGCCT- 345
|||||||||| ||||||||||||||||||| |||||||||| |||||||| ||
Sbjct 227 ACTCCTCCTCCTCCGTCGCATCTCTCAACG------CTTCTTCTTCAATTGTTAAG-CTC 279
Query 346 AAGGAAGGTAGCTTCGCCGACATCATCGATCGTGCTCTTGAAAAAGAGTTCAATGAAAGC 405
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 280 AAGGAAGGTAGCTTCGCCGACATCATCGATCGTGCTCTCGAAAAAGAGTTCAACGAAAGC 339
Query 406 GACCAGAATGAAGTGGCTGATCCTGGAAGCTTCAATAACAGTGTAGCTGGACAACAGGCT 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 340 GACCAGAATGAAGTGGCTGATCCTGGAAGCTTCAATAACAGTGTAGCTGGACAACAGGCT 399
Query 466 GTTCTGGAAACTGTAGCCCGAGTAAAGTCGACCAAGAAAAATGAGACAAAAGAGGAGAAG 525
|||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||
Sbjct 400 GTTCTGGAAACTGTAGCCAGAGTAAAGTCAACCAAGAAAAATGAGACAAAAGAGGACAAG 459
Query 526 CGTTTTCAACTCCATGATGTTTTCAACTTGAACAATGATAACAGAGCTGAGGACACTCCA 585
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 460 CGTTTCCAACTCCATGATGTTTTCAATTTGAACAATGATAACAGAGCTGAGGACACTCCT 519
Query 586 ACTCTCATTGATCGAAAAGACAATGTCTTCATCATATCCAATTCCAAATCAAAGTATCCA 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 520 ACTCTCATTGATCGAAAAGACAATGTCTTCATCATATCCAATTCCAAATCAAAGTATCCA 579
Query 646 GTATTGCAGCTAGACTTGAGACTGATATCAGACCTGGTGGTTGTCATTGTATCTGCAACT 705
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 580 GTATTGCAGCTAGACTTGAGACTGATATCGGACCTGGTGGTTGTCATTGTATCTGCAACT 639
Query 706 TGTGGTGGTATCGCCTTTGCTTGTGCTGGACAGCCGGTGATAACTGGATATTTGCTAGCA 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 640 TGTGGTGGTATCGCCTTTGCTTGTGCTGGACAGCCGGTGATAACTGGATATTTGCTAGCA 699
Query 766 GGATCTATCATTGGGCCTGGAGGATTGAACTTCATCAGTGAGATGGTCCAGGTTGAAACA 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 700 GGATCTATCATTGGGCCTGGAGGATTGAACTTCATCAGTGAGATGGTCCAGGTTGAAACA 759
Query 826 GTTGCCCAGTTTGGTGTGGTATTTCTGCTCTTTGCTTTGGGTCTAGAGTTCTCCACTGCT 885
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 760 GTTGCCCAGTTTGGTGTGGTATTTCTGCTCTTCGCTTTGGGTCTAGAGTTCTCCACTGCT 819
Query 886 AAGCTTAAAGTTGTTCGATCAGTTGCTGTTCTGGGAGGCCTTCTTCAAATTCTTCTATTC 945
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 820 AAGCTTAAAGTTGTTCGATCAGTTGCTGTTCTAGGAGGCCTTCTTCAAATTCTTCTATTC 879
Query 946 ATGTTCTTGTGCGGTATCACAGTGTCGTTATGCGGTGGTAAACGTTCGGAGGGGGTATTT 1005
|||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 880 ATGTTCTTGTGCGGGATCACAGTGTCGTTATGCGGTGGTAAACATTCGGAGGGGGTGTTT 939
Query 1006 GTAGGAGCCTTTTTGTCAATGTCATCAACTGCGGTGGTGCTGAAGTTTCTCATGGAAAAG 1065
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 940 GTAGGCGCCTTTTTGTCAATGTCATCAACTGCGGTGGTGCTGAAGTTTCTCATGGAAAAA 999
Query 1066 AATTCAACTAATTCTCTTCATGGCCAAGTTACGATTGGAATCCTAATTCTTCAGGACTGT 1125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1000 AATTCAACTAATTCTCTTCATGGCCAAGTTACGATTGGAATCCTAATTCTTCAGGACTGT 1059
Query 1126 GCTGTGGGTTTGCTGTTTGCTTTGCTTCCAGTTCTCGAGGGAAATTCTGGCATTGTTCAT 1185
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1060 GCTGTGGGTTTGCTGTTTGCTTTGCTTCCCGTTCTTGAGGGAAATTCTGGCATTGTTCAT 1119
Query 1186 GGAATGTTGTCAATAGGAAAAGTGGTGGTTTTGTTGCTTTCGTTTTTGGCTGTTTTGTCA 1245
|||||||||||||| ||||||||||||||| |||| |||||||||||||| |||||||||
Sbjct 1120 GGAATGTTGTCAATGGGAAAAGTGGTGGTTGTGTTACTTTCGTTTTTGGCAGTTTTGTCA 1179
Query 1246 ATATTATCACGGACATGTATTCCTTGGTTGCTGAAGCTAATGGTCAGCTTATCGTCACAG 1305
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1180 ATATTATCACGGACATTTATTCCTTGGTTGCTGAAGCTAATGGTCAGCTTATCGTCACAG 1239
Query 1306 ACAAATGAACTCTATCAGTTAGCGGCTGTTGCGTTTTGTCTACTTGTAGCCTGGTGTAGT 1365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1240 ACAAATGAACTCTATCAGTTAGCGGCTGTTGCGTTTTGTCTACTTGTAGCCTGGTGTAGT 1299
Query 1366 GATAAGCTGGGATTAAGTCTTGAATTGGGTTCTTTTGCTGCGGGGGTCATGATATCCACT 1425
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1300 GATAAGCTGGGATTAAGTCTTGAATTGGGTTCTTTTGCCGCGGGGGTCATGATATCCACT 1359
Query 1426 ACTGATCTCGCTGAACATACATTGGAGCAAATCGAACCCATCCGTAATTTATTTGCTGCT 1485
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1360 ACTGATCTCGCTGAACATACATTGGAGCAAATCGAACCCATCCGTAATTTATTTGCTGCC 1419
Query 1486 CTTTTCCTAGCCAGCATTGGGATGTTAGTTAATGTCCATTTTCTGTGGACACATGTGGAT 1545
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1420 CTTTTCCTAGCCAGCATTGGAATGTTAGTTAATGTCCATTTTCTGTGGACACATGTGGAT 1479
Query 1546 ATACTGTTAGCCTCTGTGATATTAGTTATTATTATAAAGACAACAATAGTTACAACCGTT 1605
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1480 ATACTGTTAGCCTCTGTGATATTAGTAATTATAATAAAGACAACAATAGTTACAACCGTT 1539
Query 1606 GTTAAGGGATTTGGATACAACAATAAGACGGCTCTTCTGGTTGGAATATCTCTGGCTCAG 1665
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1540 GTTAAAGGATTTGGATACAACAATAAGACGGCTCTCCTGGTTGGAATATCTCTGGCTCAG 1599
Query 1666 ATAGGGGAGTTTGCCTTTGTACTACTTAGCCGTGCCTCCAATCTTCACCTCATCGAAGGG 1725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1600 ATAGGGGAGTTTGCCTTTGTACTACTTAGCCGTGCCTCCAATCTTCACCTCATCGAAGGG 1659
Query 1726 AAACTCTATCTGCTTCTCCTTGGGACAACCGCTCTAAGCCTGGTTACGACACCGCTGGTT 1785
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 1660 AAACTCTATTTGCTTCTCCTCGGGACAACCGCTCTAAGCCTGGTTACGACACCGCTGATT 1719
Query 1786 TTCAAAATGATACCAGCAGTTGTACATCTTGGGATATTGTTGAAA-TGGTTTTCTCCAGA 1844
||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||
Sbjct 1720 TTCAAAATGATACCAGCAGTTGTGCATCTTGGGATATTGTT-AAAGTGGTTTTCTCCAGA 1778
Query 1845 CAGTACTATAGAGAAAGGAGAAATTGTAAGATCAGAAAGTGGGAAACAACGGATGATTCT 1904
||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||
Sbjct 1779 CAGTACTATAGAGAAAGGAGAAATTGTAAGATCAGAAAGCGGTAAACAACGGGTGATTCT 1838
Query 1905 AATGTCACGTCAATCCCACAGCTCCTAAAACCACAAAATGTT-CTTCTCAACTAAAGTTT 1963
|||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||
Sbjct 1839 AATGTCACGTCAATCCCACAGCTCCTAAAACCACAAT-TGTTTCTTCTCAACTGAAGTTT 1897
Query 1964 GGTACACTCAATCAATTTTGAC--aaaagaaaaatgtggaaa--agaaga-ga---a-a- 2013
||||||| |||||||||||||| |||| ||||||||||||| |||||| || | |
Sbjct 1898 GGTACAC-CAATCAATTTTGACCCAAAAAAAAAATGTGGAAAGGAGAAGAAGAGCTACAG 1956
Query 2014 a----a-----gaTTTTAACACTAACATTGTTTGTTTCCTGGGAGTA 2051
| | ||||||||||||||||||||||||||||||||||||
Sbjct 1957 ATTTTAACACAGATTTTAACACTAACATTGTTTGTTTCCTGGGAGTA 2003
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83988990225
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5