BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G11810.1
Length=1248
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488018 jgi|Araly1|488018|fgenesh2_kg.6__1152__AT5G11810.1 1820 0.0
> Ahg488018 jgi|Araly1|488018|fgenesh2_kg.6__1152__AT5G11810.1
Length=1245
Score = 1820 bits (985), Expect = 0.0
Identities = 1164/1250 (93%), Gaps = 14/1250 (1%)
Strand=Plus/Plus
Query 8 CTTTTGACAACAATGGCGGACAAATCAAGCAGATCACTGATATTGTACGGAGACGGCTTG 67
|||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1 CTTTTGACAAGAATGGCGGACAAACCAAGCAGATCACTGGTATTGTACGGAGACGGCTTG 60
Query 68 GCTCGATTTGTCGATCCGTCAAATACCAACATCCATTCTCTTGCTTCCGTCGCTA-CTTG 126
|||||||| |||||||||||||||||| || |||||||||||||||| |||| || | ||
Sbjct 61 GCTCGATTCGTCGATCCGTCAAATACCCACGTCCATTCTCTTGCTTCTGTCGGTAGC-TG 119
Query 127 TGGCTTCTTGAGCCTTCCTAATGCACCTCCAGAAACTGAGAATGAAAGAATAGTTCGAGA 186
||||||||||||||||||||||||||||||||||||||| ||||| || | |||||||||
Sbjct 120 TGGCTTCTTGAGCCTTCCTAATGCACCTCCAGAAACTGACAATGAGAGGACAGTTCGAGA 179
Query 187 ATTCTCCCACTTGCTGGATGCATCCGAAGCTTATTCCATAGCTAGTGGACTAAAACCAAA 246
|||| ||| |||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 180 ATTCGCCCTTTTGCTGGATGCATCAGAAGCTTATTCGATAGCTAGTGGACTAAAACCAAA 239
Query 247 GGGAAATGGAAATGATATCTCAACTTTGGCTGAAAGGTTTATGGGACTCAAAGCTGCTTT 306
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 240 GGGAAATGGAAATGATATCTCAACTTTGGCCGAAAGGTTTATGGGACTCAAGGCTGCTTT 299
Query 307 AGTTACGGACAGTTCTACTCTGACTTCTTTCGGAAAACTGATTGGCTTAGATGTATTACA 366
||| || || |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 300 AGTAACAGATAGTTCTACTCTGACTTCTTTTGGAAAACTGATTGGCTTAGATGTATTACA 359
Query 367 GCTTAGTGAAATATGCCAAGAGAGTGATTCCTTTCCTTCTGATGCCACATCATCTAAACT 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 360 ACTTAGTGAAATATGCCAAGAGAGTGATTCCTTTCCTTCTGATGCCACATCATCTAAATT 419
Query 427 ACTAAAGCTGCTTGGATTTGAAGGAGGAAAGTGCTTGGATGTGAACCTATATGACTTGGT 486
||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 420 ACTAAAGCTACTTGGATTTGAAGGAGGAAAGTGCTTGGATGTGAGCCTATATGACTCGGT 479
Query 487 TTTTGTTCATTTCGGGGTTGATGAATATAATAACGGGAACAACA---TGGGAATTCTCGA 543
|||||| ||| ||||||||||| |||||||||| |||||||||| |||||||| ||||
Sbjct 480 TTTTGTGCATATCGGGGTTGATCAATATAATAATGGGAACAACAACATGGGAATTATCGA 539
Query 544 CTCTTTGATTGGCAGTATTATGGGAATGGCTCAACCAGGTTCAGAGATTCTATCGCGGTT 603
|||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 540 CTCTTTGATTGGTAGTATTATGAGAATGGCTCAACCAGGTTCAGAGATTGTATCGCGGTT 599
Query 604 GCATCTGTCTGTCGTTCTTAGCTATGGTTCTGTCACAGACAAAGATGTTTCAGTTTTTCC 663
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GCATCTGTCTCTTGTTCTTAGCTATGGTTCTGTCACAGACAAAGATGTTTCAGTTTTTCC 659
Query 664 AATCAAGACTCCACAAGAAGACATTAACCCGGCATTTATAGGACTTGTCCCGCGTCAGAG 723
||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||
Sbjct 660 CATCAAGACTCCACAAGAAGACATTAACCCAGCATTTGCAGGACTTGTCCCTCGTCAGAG 719
Query 724 CTACACCATGCGAGGTGAAAAGACACGGGATGATGTTCGGCACTACTGTCCTATGTTGGT 783
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 720 CTACACCATGCGAGGTGAAAAGACACGCGATGATGTTCGGCACTACTGTCCTATGTTGGT 779
Query 784 AGCTCAGTGGCAGCATGGGGTGACCCGGAAAGACTTAGTTGATACCTTATCATTTGAAGC 843
||||||||||||||||| |||||||||||||||||||||||||| || ||||||||| |
Sbjct 780 AGCTCAGTGGCAGCATGCTGTGACCCGGAAAGACTTAGTTGATACATTGTCATTTGAAAC 839
Query 844 TCTCAAAAAGCTCTGTGGAAATCTTGTTATACCGGCTGATCGGTTCATCCACGAAGTTGC 903
||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 840 TCTTAAAAAGCTCTCTGGAAATCTTGTTATACCGGCTGATCGGTTCATCCATGAAGTTAC 899
Query 904 TTTCAAACTTTGGAAAGCCCCAAAATATGGAGCTTAAGCAAAAGTAATCATCTAGTCCGG 963
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TTTCAAACTTTGGAAGGCCCCAAAATATGGAGCTTAAGCAAAAGTAATCATCTAGTCCGG 959
Query 964 ATGAATT-CATTCTCTTTCCGCTGTTGAAGTTGTTTGTGGATTGATCTCAAATTTGCTAC 1022
||||||| ||| ||||||| ||||||| ||||| ||||||||||| |||||||||||||
Sbjct 960 ATGAATTTCATACTCTTTCTGCTGTTGGAGTTGATTGTGGATTGA-CTCAAATTTGCTAA 1018
Query 1023 CTTTACATAAAGGAAAGACACAAAAGCTGTTCTGTTTCTTCTAGATTATGTATCGTGTTA 1082
||||||||||||| ||||||||||||||||||||||||||||||| | |||||||| ||
Sbjct 1019 CTTTACATAAAGGGAAGACACAAAAGCTGTTCTGTTTCTTCTAGACTCCGTATCGTGATA 1078
Query 1083 TCCATTTCATACACACAAAAATAGAGATATAACATATATCCTGAA--G-T-GGTCATGGA 1138
||||||||||||||| |||| ||||||| |||||||||||||||| | | |||||||||
Sbjct 1079 TCCATTTCATACACA-AAAA-TAGAGATTTAACATATATCCTGAATTGGTTGGTCATGGA 1136
Query 1139 AGTGTAAAGATTATGGATCCTCTTTTACAGGGTGGTAATTAGTACCGCCGATCCAAACCA 1198
||||| |||||||||||||||| |||||||||||| |||||||||||||||||| ||
Sbjct 1137 AGTGTTG-GATTATGGATCCTCTTGTACAGGGTGGTAGTTAGTACCGCCGATCCAAGGCA 1195
Query 1199 TTCTCAATTCATCTCCATAGAGCCTTTGGCCTTTATTGTCTCTTTTGATC 1248
|||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1196 TTCTCAATTCATCTCCATAGAGCCTTTGGCCTTTATCGTCTCTTTTGATC 1245
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46624327491
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5