BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G11830.1

Length=525
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg488020 jgi|Araly1|488020|fgenesh2_kg.6__1154__AT5G11830.1         839    0.0  


> Ahg488020 jgi|Araly1|488020|fgenesh2_kg.6__1154__AT5G11830.1
Length=525

 Score =  839 bits (454),  Expect = 0.0
 Identities = 495/515 (96%), Gaps = 2/515 (0%)
 Strand=Plus/Plus

Query  13   ATGAAAGCCCTAGTAATATTTTGCCTTGTTTTTCAAGTAATCATTCAAACAGGAAACTCA  72
            |||||| |||||| |||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct  1    ATGAAAACCCTAGCAATATTTTGCCTTGTTTTCCAAGTAATCATTCAAACCGGAAACTCA  60

Query  73   GCTGATTCAGGAGATGTTGATTTTTCAATACTCATCAAAAACGAAATGTACAATGTCGAT  132
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  61   GCTGATTCAGGAGATGTTGATTTTTCAATACTCATAAAAAACGAAATGTACAATGTCGAT  120

Query  133  AACCCGTCGGTTTTCTACAATTGTCGATCATCGAAGAAAGACATCGGATGGCACAAATCG  192
            |||||||| |||||||||| ||| |||||||| |||||||||||||||||||||||||||
Sbjct  121  AACCCGTCTGTTTTCTACACTTGCCGATCATCAAAGAAAGACATCGGATGGCACAAATCG  180

Query  193  GTTCCATCCTCAGAGTTTCAATGGGAATTCGAAGTTCCTCAGTTTGGTAACGGCGTGATG  252
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  181  GTTCCATCCTCAGAGTTTCAATGGGAATTCGAAGTTCCTCAGTTTGGTAACGGCGTCATG  240

Query  253  GTCCACAATTGTCGTTTCCGGTCGAGCGCAGGAACAGCAAACGTTGAGATCAGGACATTG  312
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  GTCCACAATTGTCGTTTCCGGTCGAGCGCAGGAACAGCAAACGTTGAGATCAGGACATTG  300

Query  313  TCTACTACGGCGATGCTATGCGACGGACAAACATGTAAATATGCAATTAGACCTAATGGG  372
            |||||||| |||||||||||||| ||||||||||||||||| ||||| ||||||||||||
Sbjct  301  TCTACTACAGCGATGCTATGCGATGGACAAACATGTAAATACGCAATCAGACCTAATGGG  360

Query  373  ATTTATTTCATTGGTTACGAGTTGTATTCTCCTTATGCTATATTTGGAAGGTATATTGAA  432
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  361  ATTTATTTCATTGGTTACGAGTTGTATTCTCCTTATGCTATTTTTGGAAGGTATATTGAA  420

Query  433  TTGTCGAGGCCCGCGGAGAAGCTAGTTGAGCCGTGGAAACCTTGGTCACCACAACAACTC  492
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  421  TTGTCGAGGCCCGCGGAGAAGCTAGTTGAGCCGTGGAAACCTTGGTCACCACAACAACTC  480

Query  493  AAAGTTATGCATCGTACACAACA--TGGTCCATGA  525
            |||| |||| |||||||| ||||  ||||||||||
Sbjct  481  AAAGCTATGTATCGTACAAAACAAATGGTCCATGA  515



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19115950089


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5