BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G11830.1 Length=525 Score E Sequences producing significant alignments: (Bits) Value Ahg488020 jgi|Araly1|488020|fgenesh2_kg.6__1154__AT5G11830.1 839 0.0 > Ahg488020 jgi|Araly1|488020|fgenesh2_kg.6__1154__AT5G11830.1 Length=525 Score = 839 bits (454), Expect = 0.0 Identities = 495/515 (96%), Gaps = 2/515 (0%) Strand=Plus/Plus Query 13 ATGAAAGCCCTAGTAATATTTTGCCTTGTTTTTCAAGTAATCATTCAAACAGGAAACTCA 72 |||||| |||||| |||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct 1 ATGAAAACCCTAGCAATATTTTGCCTTGTTTTCCAAGTAATCATTCAAACCGGAAACTCA 60 Query 73 GCTGATTCAGGAGATGTTGATTTTTCAATACTCATCAAAAACGAAATGTACAATGTCGAT 132 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 61 GCTGATTCAGGAGATGTTGATTTTTCAATACTCATAAAAAACGAAATGTACAATGTCGAT 120 Query 133 AACCCGTCGGTTTTCTACAATTGTCGATCATCGAAGAAAGACATCGGATGGCACAAATCG 192 |||||||| |||||||||| ||| |||||||| ||||||||||||||||||||||||||| Sbjct 121 AACCCGTCTGTTTTCTACACTTGCCGATCATCAAAGAAAGACATCGGATGGCACAAATCG 180 Query 193 GTTCCATCCTCAGAGTTTCAATGGGAATTCGAAGTTCCTCAGTTTGGTAACGGCGTGATG 252 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 181 GTTCCATCCTCAGAGTTTCAATGGGAATTCGAAGTTCCTCAGTTTGGTAACGGCGTCATG 240 Query 253 GTCCACAATTGTCGTTTCCGGTCGAGCGCAGGAACAGCAAACGTTGAGATCAGGACATTG 312 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 GTCCACAATTGTCGTTTCCGGTCGAGCGCAGGAACAGCAAACGTTGAGATCAGGACATTG 300 Query 313 TCTACTACGGCGATGCTATGCGACGGACAAACATGTAAATATGCAATTAGACCTAATGGG 372 |||||||| |||||||||||||| ||||||||||||||||| ||||| |||||||||||| Sbjct 301 TCTACTACAGCGATGCTATGCGATGGACAAACATGTAAATACGCAATCAGACCTAATGGG 360 Query 373 ATTTATTTCATTGGTTACGAGTTGTATTCTCCTTATGCTATATTTGGAAGGTATATTGAA 432 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 361 ATTTATTTCATTGGTTACGAGTTGTATTCTCCTTATGCTATTTTTGGAAGGTATATTGAA 420 Query 433 TTGTCGAGGCCCGCGGAGAAGCTAGTTGAGCCGTGGAAACCTTGGTCACCACAACAACTC 492 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 TTGTCGAGGCCCGCGGAGAAGCTAGTTGAGCCGTGGAAACCTTGGTCACCACAACAACTC 480 Query 493 AAAGTTATGCATCGTACACAACA--TGGTCCATGA 525 |||| |||| |||||||| |||| |||||||||| Sbjct 481 AAAGCTATGTATCGTACAAAACAAATGGTCCATGA 515 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19115950089 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5