BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G11840.1
Length=959
Score E
Sequences producing significant alignments: (Bits) Value
Ahg350377 jgi|Araly1|350377|fgenesh1_pg.C_scaffold_6000970 1243 0.0
> Ahg350377 jgi|Araly1|350377|fgenesh1_pg.C_scaffold_6000970
Length=798
Score = 1243 bits (673), Expect = 0.0
Identities = 756/797 (95%), Gaps = 2/797 (0%)
Strand=Plus/Plus
Query 1 ATGGCTGCAACAGTGCTCGGCCATTTCAGTCCAATTACATCGTCCCTAAAACCACCGTCA 60
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTGCTACAGTGCTCGGCCATTTCAGTCCAATTACATCGTCCCTAAAACCACCGTCT 60
Query 61 CGCCACCGGCGATTCCTACACCACAATTTGTCCCCCAAAACACCCCTTCAATCTTCTCTT 120
||||||||| ||||||||||||||||||| | |||||||| |||||||| |||||||||
Sbjct 61 CGCCACCGGAGATTCCTACACCACAATTTATTCCCCAAAATACCCCTTCCCTCTTCTCTT 120
Query 121 ATCAAATTCGGCGCCGAAAACTCCGAACCTCAACCTCCACGGCCGTTGCCGGAAACTGAT 180
||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||| |||
Sbjct 121 ATCAAATTCGGCGCCGAGAACTCCGAACCCCAACCTCCACCGCCGTTGCCGGAAACAGAT 180
Query 181 TGTCCCGTTCCGCCGGAGCAGCAGCCAATCAACGAGTATCAATCTCTCTCCACCTCTTTC 240
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TGTCCCGTTCCGCCGGAACAGCAGCCAATCAACGAGTATCAATCTCTCTCCACCTCTTTC 240
Query 241 CCTTTCTCCTGGGCTTCAGGAGATCTAATCGAGTACTCTACCAGACTTTTCTTAACCGGC 300
||||||||||||||||||||||||||| |||||||||| || || || ||||| ||||||
Sbjct 241 CCTTTCTCCTGGGCTTCAGGAGATCTAGTCGAGTACTCGACAAGGCTCTTCTTCACCGGC 300
Query 301 GCTTCTTTCGCATTTTTCGTCGGGTTACCCGTTTCCTGGTTCGGATCCATCGGACCCGAA 360
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GCTTCTTTCGCTTTTTTCGTCGGGTTACCCGTTTCCTGGTTCGGATCCATCGGACCCGAA 360
Query 361 TATGAACCTGTTAAGAGGATTCTCGCCGCCAGCTCTAGCGGGATCTTCGTTGTCACGCTT 420
|| ||||| |||||||| |||||||||||||||||||| |||||||||||||| ||||||
Sbjct 361 TACGAACCCGTTAAGAGAATTCTCGCCGCCAGCTCTAGTGGGATCTTCGTTGTTACGCTT 420
Query 421 GCTGTCGTAAGGATGTATCTTGGTTGGGCTTATGTCGGTAATCGTCTTCTTAGCGCCACC 480
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 421 GCTGTTGTAAGGATGTATCTTGGTTGGGCTTATGTCGGTAATCGTCTTCTTAGTGCCACC 480
Query 481 GTCGAGTATGAAGAAACTGGTTGGTACGATGGTCAGGTATGGGTGAAAACACCAGAAGTC 540
|||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||
Sbjct 481 GTCGAGTATGAAGAAACTGGGTGGTATGATGGTCAGGTATGGGTGAAAACACCTGAAGTC 540
Query 541 TTGGCACGAGACCGTCTTCTTGGATCTTTCTCGGTAAAGCCAGTTCTTGCGAGACTGAAA 600
|||||||||||||||||||||||||||||||||||||| ||||| ||||| ||| |||||
Sbjct 541 TTGGCACGAGACCGTCTTCTTGGATCTTTCTCGGTAAAACCAGTCCTTGCCAGATTGAAA 600
Query 601 AACACGCTAGTTATTCTCGGATTATCGCTCATTCTTGTTATAAACCTTGGTGATTCTCCA 660
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 601 AACACGCTAGTTATTCTCGGATTATCGCTCATTCTTGTCATAAACCTTGGTGATTCTCCA 660
Query 661 ATTGCAACGTCTTATAGAACATACAGGGATCCTAGGGACAGATCCTCGCTGCCAATCCCA 720
|||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 661 ATTGCATCGTCTTATAGAACATACAAGGATCCTAGGGACAGATCCTCCCTGCCAATCCCA 720
Query 721 GGAGCGTACAATGATGAAACCGCAAGAAC-TTTCGAACCAGAAGCTTTCTGCGGTGAACC 779
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 721 GGAGCGTACAATGATGAAACCGCAAGAACGTTT-GAACCAGAAGCTTTCTGCGGTGAACC 779
Query 780 ATCTTCCGATCTTCTTT 796
||||||||||||||||
Sbjct 780 GTCTTCCGATCTTCTTT 796
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35606804478
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5