BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G11860.1
Length=1431
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488026 jgi|Araly1|488026|fgenesh2_kg.6__1160__AT5G11860.3 1853 0.0
> Ahg488026 jgi|Araly1|488026|fgenesh2_kg.6__1160__AT5G11860.3
Length=1323
Score = 1853 bits (1003), Expect = 0.0
Identities = 1168/1245 (94%), Gaps = 22/1245 (2%)
Strand=Plus/Plus
Query 180 TAGTGTATGAGCTAGTTGTTTGTAATTTGACGGCTCTCGGGAACTGATCTATCTCCGGTG 239
||||||||||||||| |||||| ||||||||||||||||||| ||||| |||||| || |
Sbjct 84 TAGTGTATGAGCTAG-TGTTTGCAATTTGACGGCTCTCGGGATCTGATTTATCTCAGGCG 142
Query 240 TCTCTGCTTTGTCGGTAGCTACAGGAGTG-AAGAGAGTTTCTACAAGGGTTTTAATGGAA 298
||| ||| |||||||||||||||| ||| |||||||||||||||||| |||||||||||
Sbjct 143 TCTGGGCTCTGTCGGTAGCTACAGGGGTGAAAGAGAGTTTCTACAAGGCTTTTAATGGAA 202
Query 299 GATGATGACTCTCCTTCTTCTCGGGATTTGGATGCACAGAACCCTTATGATCGATTGCTT 358
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 203 GACGATGACTCTCCTTCTTCCCGGGATTTGGATGCACAGAACCCTTATGATCGATTGCTT 262
Query 359 GCTCTAGATACAAGTACCGTAGATCCAAATTGTAACTTGGATTCGGTTTCTGCCATTTAT 418
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 263 GCTCTAGATACAAGTACCGTAGATTCAAATTGTAACTTGGATTCGGTTTCTGCCATTTAT 322
Query 419 CTAGCGATGAAGAGCTCTAAGCTGGAATGTGTTGACGAGCGTGGTCAAGATTCCCTTATT 478
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 323 CTAGCGATGAAGAGCTCGAAGCTGGAATGTGTTGACGAGCGTGGCCAAGATTCCCTTATA 382
Query 479 ACTTCGGTATGCATGGAGGATGAAGAGGATGAGGAGCTCGATGAGTTTGATCCTTATCTG 538
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 383 ACTTCGGTATGCATGGAGGATGAAGAGGATGAGGAACTCGATGAGTTTGATCCTTATCTG 442
Query 539 TTTATCAAGAACTTGCCGAACCTGTCTTCTGTTGTCCCAACTTTCAGGCCGGTCTTGCTT 598
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 443 TTTATCAAGAACTTGCCGAACTTGTCTTCTGTTGTCCCAACTTTCAGGCCGGTCTTGCTT 502
Query 599 CCTAAACAAACCCGAAGCTGTCCTCCTATTTCTCTTGTCCTAGACCTTGATGAAACTCTT 658
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 503 CCTAAACAAACCCGGAGCTGTCCTCCTATTTCTCTAGTCCTAGACCTTGATGAAACTCTT 562
Query 659 GTGCACTCGACTCTAGAGCCGTGTGGTGAGGTAGATTTCACATTCCCAGTGAATTTTAAT 718
||||||||||||||||| |||||||||||||| |||||||||||||| || |||||||||
Sbjct 563 GTGCACTCGACTCTAGAACCGTGTGGTGAGGTGGATTTCACATTCCCTGTAAATTTTAAT 622
Query 719 GAAGAAGAGCATATGGTGTATGTGCGATGCCGTCCTCACCTCAAAGAGTTTATGGAGAGA 778
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 623 GAAGAAGAGCATATGGTGTATGTGCGGTGCCGTCCTCACCTCAAAGAGTTTATGGAGAGA 682
Query 779 GTGTCCCGACTTTTTGAGATCATTATATTTACAGCTAGCCAAAGTATTTATGCTGAGCAA 838
|| ||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 683 GTTTCCCGTCTTTTTGAGATCATTATATTTACAGCTAGCCAAAGCATTTATGCCGAGCAA 742
Query 839 CTTCTGAACGTGCTTGACCCTAAGAGAAAGCTCTTTCGCCATAGAGTGTACCGTGACTCG 898
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 743 CTTCTGAACGTACTTGACCCTAAGAGAAAGCTCTTTCGCCATAGAGTGTACCGTGACTCC 802
Query 899 TGTGTTTTCTTTGATGGTAACTACCTCAAGGATTTGTCAGTCCTCGGGCGTGATTTATCT 958
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 803 TGTGTTTTCTTTGATGGTAACTACCTAAAGGATTTGTCAGTCCTTGGGCGTGATTTATCT 862
Query 959 CGTGTTATCATTGTTGATAACTCCCCACAGGCATTTGGTTTCCAAGTGGAAAATGGAGTG 1018
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||
Sbjct 863 CGTGTTATCATTGTTGACAACTCCCCACAGGCATTTGGTTTCCAAGTGGAGAATGGGGTT 922
Query 1019 CCAATAGAGAGCTGGTTTAATGACCCATCAGATAAAGAACTCCTTCACTTGCTGCCATTT 1078
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 923 CCAATAGAGAGCTGGTTTAATGACCCGTCAGATAAAGAACTCCTTCACTTGCTCCCATTT 982
Query 1079 CTTGAAAGCCTAATTGGAGTTGAAGATGTAAGGCCAATGATCGCCAAGAAATTCAATCTA 1138
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 983 CTTGAAAGCTTAATTGGAGTTGAAGATGTAAGGCCAATGATCGCCAAGAAATTCAATCTA 1042
Query 1139 AGGGAGAAGATTGATGCAGCTGTAGCCGCACCTGAATATCCTGCTGAGGCGGGAGATCCT 1198
||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 1043 AGGGAGAAGATCGATGCAGCTGTAGCTGCACCTGAATATCCTGTTGAGGCGGGAGATCCT 1102
Query 1199 TTCGAAAGGTAAAGTCTATCGCC-AAAAC---A----CTTTTAAAGGAAGAATCTGGCAC 1250
||||||||||||||||||||||| |||| | ||||||||||||||||||||||
Sbjct 1103 TTCGAAAGGTAAAGTCTATCGCCGAAAAAGTTATAAGCTTTTAAAGGAAGAATCTGGCAT 1162
Query 1251 AAGAGCAGAG-GTTGGAGA-AGATATATAAGTATATCAATGTTGTTTTCTTATTAGTTTA 1308
|||||| ||| | | ||| | |||||||| ||||||||||||||||||||||||| |||
Sbjct 1163 AAGAGCTGAGAGA-G-AGATATATATATAAATATATCAATGTTGTTTTCTTATTAGCTTA 1220
Query 1309 AATTAAGAACTTGGTATACAGAGAAAGACAGGATATGCCTGTAAAAACAGTTTAAGGCAC 1368
||||| ||||||||||||||||||||||||||||| ||||||||| |||||||| ||||
Sbjct 1221 AATTATGAACTTGGTATACAGAGAAAGACAGGATAGGCCTGTAAA--CAGTTTAATGCAC 1278
Query 1369 AATAACTGTATAATTGTTT-TCT---C-G-TTTATTTACTAGTAC 1407
||||||||||||||||| | ||| | | ||||||||||| |||
Sbjct 1279 AATAACTGTATAATTGTCTCTCTTTTCTGGTTTATTTACTACTAC 1323
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53516794225
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5