BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G11870.2
Length=1241
Score E
Sequences producing significant alignments: (Bits) Value
Ahg893107 jgi|Araly1|893107|Al_scaffold_0006_1103 1240 0.0
> Ahg893107 jgi|Araly1|893107|Al_scaffold_0006_1103
Length=789
Score = 1240 bits (671), Expect = 0.0
Identities = 749/787 (95%), Gaps = 4/787 (1%)
Strand=Plus/Plus
Query 301 ATGGTGTGGTTGACGAATCAACAGATAGGGAGATGGAAAAGGAAACGAATTTTGGTTGTG 360
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 ATGGTGTGGTTGACGAATCAACAGATCGGGAGATGGAAAAGGAAACGAATTTTGGTTGTG 60
Query 361 GGATCGTTCCTCTGTTGGTCAATCATCATGTTCATCACTCCCAAAGTTCCTCTCGATTCA 420
||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 61 GGATCGTTCCTCTGTTGGTTAATCATCATGTTCATTACTCCCAAAGTTCCTCTCGATTCC 120
Query 421 TTTCGCCATCATATCTTCGCCGATAAACGCAATTTCATGGGAGTGCCTAATACATTGAAT 480
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTTCGTCATCATATCTTCGCCGATAAACGCAATTTCATGGGAGTGCCTAATACATTGAAT 180
Query 481 GTGATGACCAACTTTCCCTTTCTTATCGTTGGAGTTCTTGGTTTTGTTCTTTGCATTGGA 540
|||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 181 GTGATGACCAACTTTCCCTTTCTTATTATTGGTGTTCTTGGTTTTGTTCTTTGCATTGGA 240
Query 541 GGAAGCTTCTTCAACATAAGTTTAAATGGTGAGATCTGGGGATGGACACTGTTCTACGCA 600
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 241 GGAAGCTTCTTCAACATAAGTTTAAAAGGTGAGATCTGGGGATGGACACTGTTCTACGCA 300
Query 601 GGCATTGCAAGCTTGGCTTTTGGTTCTGCTTTTTATCATCTCAAACCTGATGACAACAGA 660
||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 301 GGCATTGCAAGCTTGGCCTTTGGTTCTGCCTTTTATCATCTTAAACCTGATGACAACAGA 360
Query 661 ATCGTCTGGGACACTTTGCCTATATTGATTGCGTATTCGTCGCTTTTCTCTAGTTTTTTG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ATCGTCTGGGACACTTTGCCTATATTGATTGCGTATTCGTCGCTTTTCTCTAGTTTTTTG 420
Query 721 GTTGAGAGAGCGGGGGAGAAAGTGGGACTTAGTTGCCTCATCTTGCTTCTATTTATATCA 780
||||||||||||||||||| ||||||||| |||||||||||| |||||||||| ||||||
Sbjct 421 GTTGAGAGAGCGGGGGAGATAGTGGGACTAAGTTGCCTCATCGTGCTTCTATTCATATCA 480
Query 781 T-GTCTCAGTGTTGCTTACGCCAGAGTGTTTAATGATCTCCGGTTATGCATGACGTTCCA 839
| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TTGT-TCAGCGTTGCTTACGCCAGAGTGTTTAATGATCTCCGGTTATGCATGACGTTCCA 539
Query 840 GTTGATACCGTGTCTGGTGATTCCCGTCATGGCGGTTTTGTTACCTCCCAAATATACACA 899
|||||| || ||||||| |||||||||||| ||||||||||||||||||||||| | ||
Sbjct 540 GTTGATTCCATGTCTGGCAATTCCCGTCATGACGGTTTTGTTACCTCCCAAATATTCTCA 599
Query 900 CTCTAGATTCTGGCTCTGGGCAACAGCGGCGTACACTATTGCCAAGATTGAAGGACTTGC 959
|||||||||||||||||||||||||||||||||||||||||||| |||||| || |||||
Sbjct 600 CTCTAGATTCTGGCTCTGGGCAACAGCGGCGTACACTATTGCCAGGATTGAGGGGCTTGC 659
Query 960 AGACAACAAAATATACAATGCAAATCGATATATCATCAGTGGGCATTCACTGGAGCATTT 1019
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 660 AGACAGCAAAATATACAATGCGAATCGATATATCATCAGTGGGCATTCACTGGAGCATTT 719
Query 1020 GTGTTCTGCCGTGGCTACGCTTTTACTTACCATTATGCTTTTGTA-TAGAAGCATTCGGT 1078
|||||| |||| |||||| |||||||||||||||||||||| || ||||||||||||||
Sbjct 720 GTGTTCAGCCGCGGCTACACTTTTACTTACCATTATGCTTT-GTTGTAGAAGCATTCGGT 778
Query 1079 TTAATAG 1085
| |||||
Sbjct 779 TAAATAG 785
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46357467072
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5