BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G11890.1
Length=1281
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488029 jgi|Araly1|488029|fgenesh2_kg.6__1163__AT5G11890.1 1596 0.0
> Ahg488029 jgi|Araly1|488029|fgenesh2_kg.6__1163__AT5G11890.1
Length=1253
Score = 1596 bits (864), Expect = 0.0
Identities = 1170/1304 (90%), Gaps = 75/1304 (6%)
Strand=Plus/Plus
Query 1 AAGATTCCACAAAAACTCTGTATTGtctct-t-tctctctcactatctctctctctTT-T 57
|||||||||||||||||||||||||||||| | | ||||||||||||||||||||||| |
Sbjct 1 AAGATTCCACAAAAACTCTGTATTGTCTCTCTCTTTCTCTCACTATCTCTCTCTCTTTCT 60
Query 58 GTGAGCTCAGATCTGACCAGAGAGAAAGAAACAACCGGAGAAGAAGAAGATGACTGACCG 117
||||||||||||||||| || || | ||||||||||||||||||||||
Sbjct 61 -TGAGCTCAGATCTGACC----AG--AG-----A----AGAAGAAGAAGATGACTGACCG 104
Query 118 AGTCTTCCCAGCTTCCAAACCACCAACCGCCACTAATGGAGCTCCACCAGTTGGTTCCAT 177
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 105 AGTCTTCCCAGCTTCCAAACCACCAACCGCCACTAATGGAGCTCCACCAGGTGGTTCCAT 164
Query 178 ACCACCTCCTCCAGCTCCGGCGACTGTAACCAGCAACGGAACAACAAACGGAATGGCTAA 237
|||||||||||| ||| ||||| | |||||||||||||||||| | || |||||||| ||
Sbjct 165 ACCACCTCCTCCGGCTTCGGCGGCAGTAACCAGCAACGGAACAGCCAATGGAATGGCAAA 224
Query 238 TCAGAAACCTCAAGTCTACATTCCAGCTAACCGTCCGGTTTACCGTCCACAGCCTTACAG 297
|||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||
Sbjct 225 TCAGAAACCTCAAGTCTATATTCCGGCTAACCGTCCGATTTACCGTCCACAGCCTTACAG 284
Query 298 TCGCCGTCATCACCACCAATCTCGACCAAGCTGCCGACGAATTTGCTGTTGTTGCTGTTT 357
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 285 TCGCCGTCATCATCACCAATCTCGACCAAGCTGCCGACGAATTTGCTGCTGTTGCTGTTT 344
Query 358 CTGGTCGATTCTGATAATTCTGATCTTAGCTCTCATGACTGCAATCGCCGCCACCGCGAT 417
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 345 CTGGTCGATTCTGATAATTCTGATCTTAGCTCTCATGACAGCAATCGCCGCCACCGCGAT 404
Query 418 GTACGTGATCTACCACCCTCGTCCGCCGTCGTTCTCCGTCCCGTCAATAAGAATCAGCCG 477
||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 405 GTACGTGATCTACCACCCTCGTCCGCCGTCGTTCTCCGTCCCGTCGCTACGAATCAGCCG 464
Query 478 CGTGAACCTAACAACCTCCTCTGATTCCTCCGTCTCTCATCTCTCTTCCTTCTTCAACTT 537
||| || ||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 465 CGTAAATCTAACGACCGCCTCTGATTCCTCCGTCTCTCATCTCTCTTCCTTCTTCAACTT 524
Query 538 CACTCTAATCTCAGAGAATCCAAACCAACACCTCTCTTTCTCTTACGATCCTTTCACCGT 597
|||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 525 CACTTTACTCTCAGAGAATCCAAATCAACACCTCTCTTTCTCTTACGATCCTTTCACCGT 584
Query 598 CACCGTTAATTCAGCTAAATCCGGTACGATGCTCGGTAACGGAACTGTTCCTGCTTTCTT 657
||||||||| ||||| ||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 585 CACCGTTAAATCAGCCAAATCCGGTACGATGCTAGCTAACGGAACTGTTCCTGCTTTCTT 644
Query 658 CAGCGATAACGGTAACAAAACTTCGTTTCACGGCGTGATCGCTACGTCTACAGCGGCGCG 717
|||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||
Sbjct 645 CAGCGATAACGGTAACAAGACTTCGTTTCACGGCGTGATCGCTACGTCAACAACGGCGCG 704
Query 718 TGAGTTAGATCCGGATGAAGCTAAGCATCTGAGATCAGATCTGACGCGCGCGCGTGTAGG 777
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||
Sbjct 705 TGAGTTAGATCCGGATGAAGCTAAGCATTTGAAATCAGATCTGACGCGCGCGCGTGT-GG 763
Query 778 AT-AT-GAGATCGAGATGAGAACTAAAGTGAAGATGATAATGGGGAAGCTGAAGAGTGAA 835
| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 764 -TGTTGGAGATCCAGATGAGAACTAAAGTGAAGATGATAATGGGGAAGCTGAAGAGTGAA 822
Query 836 GGAGTAGAGATCAAAGTGACATGTGAAGGATTTGAAGGAACTATACCAAAAGGTAAAACT 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 823 GGAGTAGAGATCAAAGTGACATGTGAAGGATTTGAAGGAACTATACCAAAAGGTAAAACT 882
Query 896 CCAATTGTAGCTACTTCTaaaaaaaCTAAGTGTAAGTCTGATCTTAGTGTCAAGGTCTGG 955
|||||||| || |||||||||||| ||||||||||||||||||| || || |||||||||
Sbjct 883 CCAATTGTCGCAACTTCTAAAAAATCTAAGTGTAAGTCTGATCTAAGCGTTAAGGTCTGG 942
Query 956 AAATGGAGTTTCTAGAGGGAATTTTGATAATTTCACAATTGAAATTTTCTATATAATCTT 1015
||||||||||| |||||||||||| |||| |||||||||||||||||| | | | ||
Sbjct 943 AAATGGAGTTTTTAGAGGGAATTT-GATATTTTCACAATTGAAATTTT-T-T-T---CT- 994
Query 1016 CTTCtttttttCTTCTGGATTTTGTGAAACTTTTGGAATGATCCAAAAGGAGATTTCTTC 1075
||||||||||||| |||||||||||||||||| | ||||||||
Sbjct 995 ----------------GGATTTTGTGAAAATTTTGGAATGATCCAAAAAAAAATTTCTTC 1038
Query 1076 AGTTGTTAGTTAAAAAATTTCAGAGAAGAGTCAGAGAGATA-AG----G-TATTGTCAAG 1129
|||||||||||||||| |||||||||||||||||||||| | || | ||||||||||
Sbjct 1039 AGTTGTTAGTTAAAAATTTTCAGAGAAGAGTCAGAGAGAGAGAGATAAGATATTGTCAAG 1098
Query 1130 TAGAAGAAGGCCAGAGAATTCACGGCTTCTaaaaaaaTTT-CTTGGATTTTTGTTTT--- 1185
||||||||||||| ||||||||| ||||||||||||| | ||||||||||||||||
Sbjct 1099 TAGAAGAAGGCCACAGAATTCACAGCTTCTAAAAAAAAATACTTGGATTTTTGTTTTTTT 1158
Query 1186 ------GTTTGGAACTTTCTTACTT-GAATTTATATTTAATGGATACAGAAATATAAATG 1238
||||||||||||||| || |||||||||| | | | || || ||||||||
Sbjct 1159 TTTTTTGTTTGGAACTTTCTTTGTTTGAATTTATAT--A-T--A--CA-AA-TATAAATG 1209
Query 1239 TAATACTTGTAACG-AATGG-AGTACTAAAAAGCTGGAGATTGC 1280
|||||||| ||| | ||||| |||||||||||||||||||||||
Sbjct 1210 TAATACTTATAAGGGAATGGGAGTACTAAAAAGCTGGAGATTGC 1253
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47882383752
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5