BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G11900.1
Length=1021
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488030 jgi|Araly1|488030|fgenesh2_kg.6__1164__AT5G11900.1 1504 0.0
> Ahg488030 jgi|Araly1|488030|fgenesh2_kg.6__1164__AT5G11900.1
Length=986
Score = 1504 bits (814), Expect = 0.0
Identities = 931/985 (95%), Gaps = 17/985 (2%)
Strand=Plus/Plus
Query 36 aaGCGACTAACAGAAG---aaaaaaaCGAAAAGGATTATTCCGCCGTAGAAT-CCATATT 91
||||||| |||||||| ||||||| ||||||||||||||||||||||||| |||||||
Sbjct 15 AAGCGACGAACAGAAGAAAAAAAAAAGGAAAAGGATTATTCCGCCGTAGAATCCCATATT 74
Query 92 CTCTCCCTCATCACTTTGATAAACAAGAGTCTCATTTTTCGCTTTTCCAAAGGGAACAAC 151
||||||||||||||||| || |||||| ||||| |||||||||||||||||| |||||
Sbjct 75 ATCTCCCTCATCACTTTGCTACACAAGAATCTCA-TTTTCGCTTTTCCAAAGGAAACAA- 132
Query 152 TTCTTCGGATTATTATCTATGGCAGAGAAGCTTGAGCCGGTGAAGGTTTTGTACTGCGGA 211
|| | |||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 133 -------GA--ACTATCTATGGCGGAGAAGCTCGAGCCGGTGAAGGTTTTGTACTGCGGA 183
Query 212 GTTTGCTCTCTTCCAGCGGAATACTGCGAATTCGGTCCCGATTTCGCTAGATGTAAGCCC 271
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 184 GTTTGCTCTCTTCCAGCCGAATACTGCGAATTCGGTCCCGATTTCGCTAGATGTAAGCCC 243
Query 272 TGGCTCGTCGAAAACGCCCCAGATCTCTATCCTGATCTCCTCAAAGAAGCAAATGAGAAG 331
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 244 TGGCTCGTCGAAAACGCCCCGGATCTCTATCCTGATCTCCTCAAAGAAGCTAATGAGAAG 303
Query 332 GCAGCAGATAATGTTTCTGACAAACTCCAGTCGGTGGGAATCTCTTCAGGTGGTGCTGAT 391
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 304 GCAGCAGATAATGTTTCTGACAAACTCCAGTCGGTGGGAATATCTTCAGGTGGTGCTGAT 363
Query 392 GGGGCACCATCTTCAGCTCAGACTGGAGGGACATCCAAGAAGGAGGAAGTGAAGCGCCTA 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 GGGGCACCATCTTCAGCTCAGACTGGAGGGACATCCAAGAAGGAGGAAGTGAAGCGCCTA 423
Query 452 CCTGGGGGGAAAGTTAAAAAGAAAGATCGACAGGAAGTTATCATTGAAAAGGTTGTACGC 511
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 424 CCTGGGGGAAAAGTTAAAAAGAAAGATCGACAGGAAGTTATTATTGAAAAGGTTGTACGC 483
Query 512 AACAAACGCAAGTGTATCACCATTGTGAAAGGACTAGAACTGTTTGGGATAAAACTCAGT 571
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 484 AACAAGCGCAAGTGTATCACCATTGTCAAAGGACTAGAACTGTTTGGGATAAAACTCAGT 543
Query 572 GATGCCTCTAAAAAGCTTGGTAAGAAGTTTGCCACTGGAGCATCAGTTGTCAAGGGACCA 631
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 544 GATGCCTCTAAAAAGCTTGGGAAGAAGTTTGCCACTGGAGCATCAGTTGTCAAGGGACCA 603
Query 632 ACTGAAAAGGAGCAAATTGATGTTCAAGGGGATATAATCTATGATATCGTTGAATTCATT 691
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 604 ACTGAAAAGGAGCAAATTGATGTTCAAGGAGATATAATCTATGATATCGTTGAATTCATT 663
Query 692 ACAGACACTTGGCCCGACGTACCTGAAAGATCCATTTTCTTCATCGAAGATGGGAAGAAG 751
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 664 ACAGACACTTGGCCCGACGTACCTGAAAGATCCATTTTCTTCATAGAAGATGGGAAGAAG 723
Query 752 GTTCAGGCTGGTTGATGATCACCTTTGTCCTCGTTTTTTGGCATGGCGGGTTCATGTAGA 811
||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 724 GTTCAAGCTGGTTGATGATCACCTTTGTCCTCGGTTTT-GGCATGGCGGGTTCATGTAGA 782
Query 812 CGAGCTAGTTCCTGAGTTTTCCTATGTGTTTGGAGGAAATCGCATCTTGATTATAACTTT 871
||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||
Sbjct 783 TGAGCTAGTTCCTGAGTTATCCTATGTGTTTGGAGGAAATCACATCATGATTATAACTTT 842
Query 872 CAACGTAACGTATAGTTGGATTTATCATACTATTTTCTTATTCGGGTTGCGATAGTTCCA 931
||| ||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||
Sbjct 843 CAATATAACGTATAGTTGGATT-ATCATACTACTTTCTTATTCGGGTTGCGATAATTCCA 901
Query 932 GACATGTTTCTCCAAACATTTCTCTTTTTGGGGGTCTTAATATTTAAAATGTGTCTTGAA 991
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 902 GACATGTTTCTCCAAACATTTCTCTTTTTGGGGGTCTTAATATTTAAAATGCGTCTTGAA 961
Query 992 ATGAACGCGTTCTTCATCCTTGACC 1016
||||| | |||| || | |||||||
Sbjct 962 ATGAATGTGTTCCTCGTTCTTGACC 986
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37970425332
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5