BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G11910.1
Length=1154
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940676 jgi|Araly1|940676|scaffold_601220.1 1432 0.0
> Ahg940676 jgi|Araly1|940676|scaffold_601220.1
Length=934
Score = 1432 bits (775), Expect = 0.0
Identities = 881/933 (94%), Gaps = 4/933 (0%)
Strand=Plus/Plus
Query 12 GGTATCTCCTCCGCGCGACGATGTCAGAGACTCGCCGGAATCAGTCTAGCGATGAACAAA 71
||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||| ||
Sbjct 1 GGTATCTCCTCCGCGCGACGATGTCGGAGACTCGCCGGAATCAATCTAGCCATGAACGAA 60
Query 72 TCGAAAAATCAGAGATTCAGCACCAAAGAGTTGTAATTGAGAACAGTCATGGTGAGAAAC 131
|||| || || |||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 TCGACAACTCGGAGATTCAACACCAAAGACTTGTAATTGAGAACAGTCATGGTGAGAAAC 120
Query 132 TCGTAGGAGTTTTGCATGATACTGGTTCTACAGAGACTGTTGTCATCTGCCATGGATTTC 191
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 121 TCGTAGGAGTTTTGCATGATACGGGTTCTATAGAGACTGTTGTCATCTGCCATGGATTTC 180
Query 192 GTTCATCAAAGAATCGGATTCCAATGCTGACCATTGCAAGTTTCTTTGAAAGAGCAATGA 251
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 181 GGTCATCAAAGAATCGGATTCCAATGCTGACCATTGCCAGTTTCTTTGAAAGAGCAATGA 240
Query 252 TCAGTTCTTTCCGGTTTGACTTTGCTGGCAACGGGGAAAGCCAAGGATCATTTCAGTATG 311
|||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 241 TCAGCTCTTTCCGGTTTGACTTCGCTGGCAACGGGGAAAGTGAAGGATCATTTCAGTATG 300
Query 312 GTAACTATCGCCGTGAAGTTGAAGATTTGCGCTCTGTTTTGCAACACTTGCGTGGTGTTA 371
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||
Sbjct 301 GTAACTATCGCCGTGAAGTTGAAGATCTGCGCTCTGTTCTGCAACACTTGCGTGGGGTTA 360
Query 372 ACCGTG-TGATTTCTGCGATTATCGGACATAGTAAAGGTGGAAATGTGGTGCTTTTGTAT 430
|||||| | |||||||| || || ||||||||||||||||||||||||||||||||||||
Sbjct 361 ACCGTGAT-ATTTCTGCCATAATTGGACATAGTAAAGGTGGAAATGTGGTGCTTTTGTAT 419
Query 431 GCAGCAAAGTACAATGATGTGCAGACTGTTGTGAATATCTCAGGGCGGTTTTTTCTTGAC 490
|||||||||||||| |||||||| ||||||||||||||||| || ||||||||||||||
Sbjct 420 GCAGCAAAGTACAAGGATGTGCACACTGTTGTGAATATCTCCGGCCGGTTTTTTCTTGAG 479
Query 491 AGAGGAATCGAATTTCGGCTTGGTAAGGACTACTTCAAGAGAATCAAAGATAATGGATTC 550
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 480 AGAGGAATCGAAGGCCGGCTTGGTAAGGACTATTTCAAGAGAATCAAAGATAATGGATTC 539
Query 551 ATTGATGTTAGCAACAGAAAGGGAAAGTTTGAATATCGGGTAACAGAAGAGAGTCTAATG 610
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 ATAGATGTTAGTAACAGAAAGGGAAAGTTTGAATATCGGGTAACAGAAGAGAGTCTAATG 599
Query 611 GACCGTCTCACAACCAATGCTCATGAAGCATGTCTCTCAATTCGTGAAAACTGCAGGGTC 670
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 600 GACCGTCTCACAACCAATGCTCATGAAGCATGTCTCTCAATTCATGAAAACTGCAGGGTC 659
Query 671 TTGACAGTCCATGGGTCAAATGATAGGATTGTGCATGTAACAGAAGCGTCCGAATTTGCT 730
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TTAACAGTTCATGGGTCAAATGATAGGATTGTGCATGTAACAGAAGCGTCCGAATTTGCC 719
Query 731 AAACAGATAAAGAATCATAAGCTGTATGTTATTGAAGGAGCTGATCATGAGTTCACTTCT 790
||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 720 AAACATATAAAGAATCATAAGCTGTGTCTTATTGAAGGAGCTGATCATGAGTTCACTTCT 779
Query 791 CACCAGCATCAGCTTGCTTCAATCGTTCTCTCATTCTTTAAATTGGATCCTAAGAAAGAT 850
||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||
Sbjct 780 CACCAGCATCAGCTTGCTTCAATTGTTCTCTCATTCTTCAAATTGGATCCCAAGAAAGAT 839
Query 851 GATGAGTCAGGTGATATCAGTACAAGTAACCAAGACTCCATGAGATCAGTTGTTCCTATT 910
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||
Sbjct 840 GATGAGTCAGGTGATATCAGTACAAGTAACCAAGACTCTATGAGATCAGCTGTTCCTTTT 899
Query 911 ACATCGCGAATTTAAATC-GCTTTGCTGAGTTA 942
|||||||||||||||| | |||| |||||||||
Sbjct 900 ACATCGCGAATTTAAA-CAGCTTAGCTGAGTTA 931
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43040773293
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5