BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G11920.1
Length=1917
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940677 jgi|Araly1|940677|scaffold_601221.1 2601 0.0
> Ahg940677 jgi|Araly1|940677|scaffold_601221.1
Length=1687
Score = 2601 bits (1408), Expect = 0.0
Identities = 1603/1696 (95%), Gaps = 17/1696 (1%)
Strand=Plus/Plus
Query 82 GAGTAAGACCGATCATCGATGGCTGATGTAATGGAACAGAATCTTCTTCAA-ACCGCTGT 140
|||||||||||||||||||||||||| | ||||| |||||||||||||||| || |
Sbjct 3 GAGTAAGACCGATCATCGATGGCTGAGGCAATGGCACAGAATCTTCTTCAAGACAAC-CA 61
Query 141 GCTTAACCGGACGTCCTTCCATTTCCAACCTCAGAGAAATTGGCTCAACGATCCAAACGC 200
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 62 GCTTAACCGGACTTCCTTCCATTTCCAACCTCAGAGAAATTGGCTCAACGATCCAAACGC 121
Query 201 GCCAATGTATTACAAAGGATTCTACCATTTGTTCTACCAGAATAACCCTTTGGCTCCCGA 260
||||||||| |||||||||||||||||||||||||||||| | |||||||||||||| ||
Sbjct 122 GCCAATGTACTACAAAGGATTCTACCATTTGTTCTACCAGCACAACCCTTTGGCTCCTGA 181
Query 261 ATTCAGTAGGACAAGAATCATATGGGGACACTCTGTTTCACAAGACATGGTCAATTGGAT 320
||||||| | || ||| |||||||| ||||||||||||||||| |||||||| |||||
Sbjct 182 TTTCAGTA--A-AATAATGATATGGGGGCACTCTGTTTCACAAGATATGGTCAACTGGAT 238
Query 321 CCAGCTCGAACCAGCCCTTGTC-CCTTCTGAGTCCTTTGACATCAACAGCTGCTGGTCAG 379
||| || |||||||||||| || ||||||||| |||||||||||||||||||||||||||
Sbjct 239 CCAACTTGAACCAGCCCTT-TCTCCTTCTGAGCCCTTTGACATCAACAGCTGCTGGTCAG 297
Query 380 GATCCGCCACGATCCTCCCTGATGGCAGACCTGTAATTTTGTACACTGGACTCGACG-TC 438
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
Sbjct 298 GATCCGCCACGATCCTCCCCGATGGCAGACCTGTAATTTTGTACACCGGACTCGACGAT- 356
Query 439 AACAACAAACAGCAAGTCACAGTTGTTGCCGAACCAAAGGACGTTTCTGACCCTTTGCTT 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 AACAACAAACAGCAAGTCACAGTTGTTGCCGAACCAAAGGACGTTTCTGACCCTTTGCTT 416
Query 499 CGTGAGTGGGTTAAGCCAAAGTACAATCCTGTGATGGTTCCGCCAAGTAATGTCCCTTTT 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 CGTGAGTGGGTTAAGCCAAAGTACAATCCTGTGATGGTTCCGCCAAGTAATGTCCCTTTT 476
Query 559 AATTGTTTCCGTGATCCCA-CGGA-GGCGTGGAAAGGGCAAGATGGGAAATGGAGAGTGC 616
|||||||||||||| |||| || | ||||||| |||||||||||||||||||||||||||
Sbjct 477 AATTGTTTCCGTGA-CCCAACG-ACGGCGTGGCAAGGGCAAGATGGGAAATGGAGAGTGC 534
Query 617 TCATAGGAGCTAAGGAGAAAGATACTGAGAAAGGAATGGCGATTTTGTACCGAAGCGATG 676
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 535 TCATAGGAGCTAAGGAGAAAGATACTGAGAAAGGAATGGCTATTTTGTACCGAAGCGATG 594
Query 677 ATTTTGTCCAGTGGACAAAGTATCCGGTGCCTTTACTTGAGTCAGAAGGAACCGGAATGT 736
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 595 ATTTTGTCCAGTGGACAAAGTATACAGTGCCTTTACTTGAGTCAGAAGGAACCGGAATGT 654
Query 737 GGGAATGCCCTGATTTTTTCCCGGTTTCTATCACTGGTAAAGAAGGTGTTGACACTTCGG 796
||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
Sbjct 655 GGGAATGCCCTGATTTTTTCCCGGTTTCTGTCACTGGTAAAGAAGGTGTTGAGACTTCAG 714
Query 797 TAAACAATGCTAGTGTGAGGCATGTCTTGAAGGCGAGTTTTGGAGGCAATGATTGCTATG 856
| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 715 TGAACAATGCTACTGTGAGGCATGTCGTGAAGGCGAGTTTTGGAGGCAATGATTGCTATG 774
Query 857 TCATTGGTAAATACTCTTCTGAGACTGAAGACTTTTCAGCGGATTATGAGTTCACTAACA 916
||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 775 TCATTGGAAAATACTCTTCTGAGAATGAAGAATTTTCAGCGGATTATGAGTTCACTAACA 834
Query 917 CTAGTGCAGATTTGAGATATGATCATGGAACGTTTTATGCCTCAAAGGCGTTCTTCGATA 976
||||||| ||||||||||||||| |||||| |||||||||||| ||||||||||||||||
Sbjct 835 CTAGTGCGGATTTGAGATATGATTATGGAAAGTTTTATGCCTCGAAGGCGTTCTTCGATA 894
Query 977 GTGTTAAAAATAGGAGGATCAACTGGGGATGGGTCATAGAGACTGATAGCAAAGAAGATG 1036
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 GTGTTAAAAATCGGAGGATCAACTGGGGATGGGTCATAGAGACTGATAGCAAAGAAGATG 954
Query 1037 ATTTTAAGAAAGGATGGGCTGGCCTTATGACTCTTCCCAGGGAAATTTGGATGGACACAA 1096
||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||
Sbjct 955 ATTTTAAGAAAGGATGGGCTGGCCTTATGTCTCTTCCCAGGGAAATGTGGCTGGACACAA 1014
Query 1097 GTGGAAAGAAGCTGATGCAATGGCCAATTGAAGAAATCAACAATCTCCGGACCAAAAGTG 1156
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 ATGGAAAGAAGCTGATACAATGGCCAATTGAAGAAATCAACAATCTCCGGACCAAAAGTG 1074
Query 1157 TTAGCCTTGATGATTGCTATGAATTCAAAACCGGCTCTACCTTTGAAATCTCAGGCATCA 1216
||||||||||| | ||||||||||| |||||||||| ||||| ||||| ||||||||||
Sbjct 1075 TTAGCCTTGAT--T-GCTATGAATTCGAAACCGGCTCGACCTTCGAAATTTCAGGCATCA 1131
Query 1217 CTGCTGCCCAAGCAGATGTAGAAGTGACTTTTAATCTGCCTTTCCTGGAAAATAATCCCG 1276
||||||||||||| || ||||| |||||||||||||||||||||||||| || ||||||
Sbjct 1132 CTGCTGCCCAAGCCGACGTAGAGGTGACTTTTAATCTGCCTTTCCTGGACGATTATCCCG 1191
Query 1277 AGATACTTGATGCTGACCAAGTTGATGATGCGACTCTGTTTGATCGTGATAGCTCGGTTG 1336
||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||| ||
Sbjct 1192 AGATACTTGATGCTGACCAAGTTGATGATGCGACTCTGTTTGATCATGACAACTCGGATG 1251
Query 1337 GATGTGTTTACGGGCCTTTTGGATTGCTAGCATTGGCTTCCAGTGATTTATCAGAACAAA 1396
||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||
Sbjct 1252 GATGTGTTTACGGGCCTTTTGGACTGCTAGCATTGGCTACCAATGATTTATCAGAACAAA 1311
Query 1397 CCGCAATCTTCTTTAAAGTTATTCGTCGCGGTAACGGATATGCAGTTGTAATGTGCAGCA 1456
||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 1312 CCGCAATCTTCTTTAAAGTTATTCGTCGCGGAAACGGATATGCAGTTGTAATGGGCAGCA 1371
Query 1457 GCGAGAAGAGGTCTTCGTTGAGAGACAACATaaaaaaaTCTTCGCATGGAGCATTCCTAG 1516
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1372 GCGAGAAGAGGTCTTCGTTGAGAGACAACATAAAAAAATCTTCGCATGGAACATTCCTAG 1431
Query 1517 ATATTGATCCAAGGCATGAGAAGATCTCATTAAGATGTTTGATCGATCACTCGATTATAG 1576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1432 ATATTGATCCAAGGCATGAGAAGATCTCATTAAGATGTTTGATCGATCACTCGATTATAG 1491
Query 1577 AGAGCTACGGAGTAGGAGGAAAAACTGTGATAACATCTAGAGTTTATCCAAAATTGGCAA 1636
|||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 1492 AGAGCTACGGAGCAGGAGGAAAAAGTGTGATAACATCTAGGGTTTATCCAAAATTGGCAA 1551
Query 1637 TTGGTGAAGCCGCTAAGCTTTATGTCTTCAATGATGGAGAAAATGGTGTGATCATGACGT 1696
|||| ||||| |||||||| ||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1552 TTGGCGAAGCAGCTAAGCTGTATGTGTTCAATGATGGAGAAAAGGGTGTGATCATGACGT 1611
Query 1697 CCCTGGAAGCTTGGAGCATGAGAAATGCCCAAATCAATTCAAACCCAACTTATTAGTTAA 1756
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1612 CCCTGGAAGCTTGGAGCATGAGAAATGCCCAAATCAATTCAAACCCAACTTATTAATGAA 1671
Query 1757 TCATATAATAT-GATA 1771
||||||||||| ||||
Sbjct 1672 TCATATAATATTGATA 1687
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72028653295
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5