BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G11930.1
Length=706
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488035 jgi|Araly1|488035|fgenesh2_kg.6__1169__AT5G11930.1 821 0.0
> Ahg488035 jgi|Araly1|488035|fgenesh2_kg.6__1169__AT5G11930.1
Length=634
Score = 821 bits (444), Expect = 0.0
Identities = 603/672 (90%), Gaps = 42/672 (6%)
Strand=Plus/Plus
Query 21 actctttctctctAATGAAGACGATGCGAGGTTTACGAAACTGCTCAAACGACGCCGTAA 80
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 1 ACTCTTTCTCTCTAATGAAGACGATGCGAGGTTTACGAGACTGCTCAAACGACGCCGTGA 60
Query 81 CGCTAGACCTGACGGTTCAtcctcctcctcctcctcctcttcctcctccagcaccatcaa 140
| ||||||||||||| | | || | | | |||||||||||||||| |||
Sbjct 61 CACTAGACCTGACGG----------T--T-CT--T-C-C-TCCTCCTCCAGCACCACCAA 102
Query 141 cagtctcctcctccaccgcctcGACGAGCCTGTCGTTCGATGAAGAGGAAACATCAGAGT 200
|||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 103 CAGTTTCCTCCTCCACCGCCTCGACGAGCCTTTCGTTCGATGAAGAGGAGACATCAGAGT 162
Query 201 CAAAGATCGGACGGCTGATATCAGAGCATCCAGTCATCATATTCACTCGATTTTCCTCAT 260
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 163 CAAAGATTGGACGGCTGATATCAGAGCATCCAGTCATCATATTCACTCGATCTTCCTCAT 222
Query 261 GTTGCATGTGCCACGTCATGAAGAAGCTTCTATCGACCGTTGGAGTTCACCCAACAGTGA 320
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 223 GTTGCATGTGCCACGTCATGAAGAAGCTTCTATCGACCGTCGGAGTTCACCCAACAGTGA 282
Query 321 TCGAGATCGACGACGGAGAAATTGCTTACCTCGCCGTTGAAGCCGCTCCGGTGCTTTTCA 380
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 283 TCGAGATCGACGACGGTGAAATTGCTTACCTCGCCGTTGAAGCCGCTCCTGTGCTTTTCA 342
Query 381 TCGGTGGTACTTGCGTCGGTGGCTTCGAGTCACTTGTAGCACTTCACCTAAGTGGTCAGC 440
|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 343 TCGGTGGTGCTTGTATCGGTGGCTTCGAGTCACTTGTAGCACTTCACCTAAGTGGTCAGC 402
Query 441 TTATTCCTAGACTCGTCGAGGTTGGAGCCTTATGGGCATAATTGTAATTTTCTGTATTTT 500
||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 403 TTATTCCTAGACTAGTTGAGGTTGGAGCCTTATTGGCATAATTGTAATTTTCTGTATTTT 462
Query 501 TCTTTCTTTCTTTC-AAGTCTAGCCTATTTATAACCTTAAGAAATTCTGATAATAAAATC 559
| || ||||||||| |||| ||||||||||||||||| || | | | || ||
Sbjct 463 T-TT-CTTTCTTTCCAAGT-TAGCCTATTTATAACCT-AA----T----A-A-TA---TC 505
Query 560 CATTGT-AAAATTTTCCATTAATCCACTCTTTCTTTCTGAAACACAAAAATGttt--ttt 616
|||||| |||| || |||||||| ||||||||||| |||||| |||||||||| |||
Sbjct 506 CATTGTGAAAAATT-CCATTAATTCACTCTTTCTTA--GAAACATAAAAATGTTTCCTTT 562
Query 617 tttCTTTATCTTTTGCCAGTCGGTAAGTATTGTTTAGATCATCAAGTGTAAGATTTGTTC 676
||| |||||||||||||||| ||||||| ||||||||||||||| ||||||||||| |||
Sbjct 563 TTTTTTTATCTTTTGCCAGTTGGTAAGTGTTGTTTAGATCATCACGTGTAAGATTTATTC 622
Query 677 CATCATAATTAT 688
||||||||||||
Sbjct 623 CATCATAATTAT 634
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25961706477
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5