BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G11940.1
Length=2289
Score E
Sequences producing significant alignments: (Bits) Value
Ahg350386 jgi|Araly1|350386|fgenesh1_pg.C_scaffold_6000979 3535 0.0
> Ahg350386 jgi|Araly1|350386|fgenesh1_pg.C_scaffold_6000979
Length=2289
Score = 3535 bits (1914), Expect = 0.0
Identities = 2172/2297 (95%), Gaps = 16/2297 (1%)
Strand=Plus/Plus
Query 1 ATGATGAGCTCT-ATAGTCTCATGGTGGtttttttGGGTAATCAGTGCTGTATGTATTCT 59
|||||||||||| | ||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 1 ATGATGAGCTCTCA-AGTCTCATGGTGGGTTTTTTGGGTAATCAGTGCTGTGTGTATTCT 59
Query 60 CAAAGTGGAGTTTAACATTGTGGAAGGAGGAGCCTATGAAGAGACTAAGGTCCACATAGT 119
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 60 CAACGTGGAGTTTAACATTGTCGAAGGAGGAGCCTATGAAGAGACTAAGGTCCACATAGT 119
Query 120 ATACCTTGGTGAAAAGGAGCATAATGATCCTGAGCTTGTAACCAG-CTCGCATCTCAGAA 178
||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||
Sbjct 120 ATACCTTGGTGAAAAGGAGCATAATGATCCTGAGCTTGTAA-CGGCCTCGCATCTCAGAA 178
Query 179 TGTTAGAATCCCTACTCGGAAGCAAAAAAGACGCTAGTGAGTCCATAGTTCATAGTTATC 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 TGTTAGAATCCCTACTCGGAAGCAAAAAAGACGCTAGTGAGTCCATAGTTCATAGTTATC 238
Query 239 GGAATGGTTTCTCCGGCTTTGCTGCCCATCTTACGGATTCCCAAGCGGAACAAATCTCAG 298
| ||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
Sbjct 239 GCCATGGTTTCTCCGGCTTTGCTGCCCATCTTACGGATTCCCAAGCAAAAAAAATCTCGG 298
Query 299 AGCATCCAGATGTAGTTCAAGTAACGCCCAATACTTTCTATGAGCTGCAAACGACAAGGA 358
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 299 AGCATCCAGATGTAGTTCAAGTAACGCCCAATAGTTTCTATGAGCTGCAAACGACAAGGA 358
Query 359 CATTTGATTACTTGGGGCTTTCTCATAGTACACCAAAAGGACTTCTTCATGAAGCCAAGA 418
||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||
Sbjct 359 CATTTGATTACTTGGGGCTTTCTCAAAGCACACCAAAAGGACTTCTTCATAAAGCCAAGA 418
Query 419 TGGGCGAGGACATCATCATCGGTGTCTTGGACTCAGGTGTGTGGCCAGAGTCACAGTCGT 478
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 419 TGGGCAAGGACATCATCATCGGTGTCTTGGACTCGGGTGTGTGGCCAGAGTCACAGTCGT 478
Query 479 TCAATGACAAAGGCTTGGGGCCGATCCCAAAACGGTGGAAAGGGATGTGCGTGGACGGTG 538
||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 479 TCAGTGACAAAGGCTTGGGGCCGATCCCAAAACGTTGGAAAGGGATGTGCGTGGACGGTG 538
Query 539 AAGATTTCGACTCGAAGAAGCATTGCAACAAGAAGTTGATAGGAGCGAGGTATTACATGG 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 AAGATTTCGACTCGAAGAAGCATTGCAACAAGAAGTTGATAGGAGCGAGGTATTACATGG 598
Query 599 ATAGTCTATTCCGAAGGAACAAAACGGATAGCGGAATACCGGACACGGAGTACATGTCCG 658
||||||| ||||| |||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 599 ATAGTCTTTTCCGTAGGAACAAAACGGATAGCCGAATACCGGACACGGAATACATGTCCG 658
Query 659 CAAGGGAAAGCTTGCCTCACGGGACCCACGTGGCCTCCACAGCTGGGGGATCTTTCGTCT 718
|||||||| |||||||||| ||||| |||||||||||||||||||||||||| |||||||
Sbjct 659 CAAGGGAAGGCTTGCCTCATGGGACACACGTGGCCTCCACAGCTGGGGGATCCTTCGTCT 718
Query 719 CAAATGTGAGTGACAACGGGTTTGGAGTGGGTACAATAAGAGGAGGAGCCCCTAGGGCTC 778
|||||||||| ||||||||||||||| |||||||||||||||| ||||||||||| ||||
Sbjct 719 CAAATGTGAGCGACAACGGGTTTGGAATGGGTACAATAAGAGGTGGAGCCCCTAGTGCTC 778
Query 779 GTATCGCGGTCTACAAAGTGTGTTGGCAAAGAGTAGACCGCACCTGCGCAAGCGCCGACA 838
|||||||||| ||||||||||||||||||||||||||| |||| ||||||||||| ||||
Sbjct 779 GTATCGCGGTTTACAAAGTGTGTTGGCAAAGAGTAGACGGCACATGCGCAAGCGCAGACA 838
Query 839 TAATCAAAGCGATGGACGACGCCATAGCCGATGGAGTGGACTTGATAACGATCTCAATAG 898
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 839 TAATCAAAGCGATGGACGACGCCATAGCGGATGGAGTGGACTTGATAACGATCTCAATAG 898
Query 899 GCAGGCCAAACCCTGTGCTGACTGAAGTTGACGTGTATAATCAAATCTCGTATGGAGCAT 958
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 899 GCAGGCCGAACCCTGTGCTGACTGAAGTTGACATGTATAATCAAATCTCGTATGGAGCAT 958
Query 959 TCCATGCAGTCGCCAAAGGTATTCCAGTTCTCAGTGCGGGTGGAAACTTTGGGCCTGGGG 1018
|||||||||||||||| || ||||| || |||||||||||||||||||||||||||||||
Sbjct 959 TCCATGCAGTCGCCAATGGCATTCCCGTGCTCAGTGCGGGTGGAAACTTTGGGCCTGGGG 1018
Query 1019 CTTACACCGTCCAAAACATAGCTCCATGGATCATAACAGTGGCTGCCACCACTCTAGACC 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 CTTACACCGTCCAAAACATAGCTCCATGGATCATAACAGTGGCTGCCACCACTCTAGACC 1078
Query 1079 GATGGTATCCCACACCTTTGACACTAGGCAACAATGTGACCTTAATGGCACGGACCCCGT 1138
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1079 GGTGGTATCCCACACCTTTGACACTAGGCAACAATGTGACCTTAATGGCACGGACCTCGT 1138
Query 1139 ACAAGGGCAATGAGATTCAAGGAGATCTAATGTTCGTATATAGCCCGGACGAGATGACGA 1198
| ||||||||||||||||||||||||||| ||| |||||||||| | ||||| |||||||
Sbjct 1139 ATAAGGGCAATGAGATTCAAGGAGATCTAGTGTACGTATATAGCGCAGACGAAATGACGA 1198
Query 1199 GTGC-AGCAAAGGGAAAAGTGGTGCTAACTTTCACGACTGGAAGTGAAGAAAGCCAGGCA 1257
|||| | ||||||||||||||||||||| |||||||||||||||||||||||| ||| ||
Sbjct 1199 GTGCGA-CAAAGGGAAAAGTGGTGCTAAGTTTCACGACTGGAAGTGAAGAAAGTCAGTCA 1257
Query 1258 GGTTATGTAACTAAACTTTTTCAGGTTGAAGCAAAGTCTGTAATTATTGCCGCCAAAAGA 1317
| ||||||| |||||||||| |||| ||||| ||| ||||||||||||||| |||||||
Sbjct 1258 GATTATGTACCTAAACTTTTAGAGGTCGAAGCTAAGGCTGTAATTATTGCCGGCAAAAGA 1317
Query 1318 AATGATGTCATCAAAGTTTCCGAAGGTCTTCCTATTATCATGGTCGACTATGAACATGGA 1377
||||| | |||||||| |||||||||||||| |||||||||| |||||||||||||||
Sbjct 1318 GATGATATTATCAAAGTATCCGAAGGTCTTCCCGTTATCATGGTAGACTATGAACATGGA 1377
Query 1378 TCTACCATATGGAAGTACCTAAGTATCACCAGAAT-GCCCACCATAAAAATAAGTTCTGC 1436
|||||||||||||||||| |||||||||| ||| | ||| ||||||||||||||||||||
Sbjct 1378 TCTACCATATGGAAGTACATAAGTATCACTAGA-TCGCCTACCATAAAAATAAGTTCTGC 1436
Query 1437 CATCGCGCTCAACGGGC-GTCTTGTAGCCACAAAGGTTGCTGATTTTTCAGGGAGAGGAC 1495
|||||||||||| |||| | ||||||||||| |||||||||||||| |||||||||||||
Sbjct 1437 CATCGCGCTCAATGGGCCG-CTTGTAGCCACTAAGGTTGCTGATTTCTCAGGGAGAGGAC 1495
Query 1496 CCAATTCCATATCTCCATACGTTCTCAAGCCTGATGTAGCGGCTCCAGGTGTGGCCATAG 1555
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1496 CCAATTCCATATCTCCATACGTTCTCAAGCCCGATGTAGCGGCTCCAGGTGTGGCCATAG 1555
Query 1556 TGGCAGCTAGTACCCCAGAA-AGTATGGGTACTGAGGAAGGATTCGCTATTCAGTCAGGA 1614
||||||||||||| |||||| | |||||||||| | |||||| ||||| ||||||||||
Sbjct 1556 TGGCAGCTAGTACTCCAGAAGA-TATGGGTACTAACGAAGGAGTCGCTGCTCAGTCAGGA 1614
Query 1615 ACTTCAATGTCAACACCAGTAGTTGCTGGTTTAGTTGCACTACTTCGAGCTGTGCATCCT 1674
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1615 ACTTCAATGGCAACACCAGTAGTTGCTGGTTTAGTTGCACTACTTCGAGCTGTGCATCCT 1674
Query 1675 GATTGGTCTCCAGCTGCGCTTAAATCAGCTCTCATCACTACAGCTTCCACAACGGATCCC 1734
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1675 GATTGGTCTCCAGCCGCGCTTAAGTCAGCTCTCATCACTACAGCTTCCACAACGGATCCC 1734
Query 1735 TACGGAGAACCTATCTTCTCAGAAGGAATGACACGAAAACTAGCCGACCCATTTGACTTC 1794
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1735 TACGGAGAACCTATCTTCTCAGAGGGAATGACACGAAAACTAGCCGACCCATTTGACTTC 1794
Query 1795 GGAGGAGGACTAGTGAACCCAAACAAAGCAGCCGACCCTGGTCTTGTCTACGATATAAGC 1854
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 1795 GGAGGAGGACTAGTGAACCCAAACAAAGCAGCCGACCCTGGTCTTGTCTACGACATAGGT 1854
Query 1855 GCAGAAGACTATAGGCTTTTTCTATGTGCATCCCATTATGACGAGAAACAAATAACCAAA 1914
||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||
Sbjct 1855 GCAGAAGACTATAGGCTTTTTCTATGTGCTTCCGATTATGACGAGAGACAAATAACCAAA 1914
Query 1915 ATATCAAAGACACATACACCATATCGATGTCCGAGTCCAAAGCCTTCTATGCTTGATCTT 1974
|||||||||||| |||| |||||||||||||| ||||||| ||| |||||||||||||||
Sbjct 1915 ATATCAAAGACAAATACGCCATATCGATGTCCAAGTCCAAGGCCCTCTATGCTTGATCTT 1974
Query 1975 AATTTGCCTTCCATAACCATTCCATTCCTCAAGGAAGATGTGACTCTCACTAGAACCGTC 2034
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1975 AATTTGCCTTCCATCACCATTCCATTCCTCAAGGAAGATGTGACTCTCACTAGAACCGTC 2034
Query 2035 ACCAACGTCGGACCCGTTGACTCTGTCTACAAACTCATCGTT-GAACCTCCTTTGGGTGT 2093
||||||||||||||||||||||||||||| || ||| ||||| | ||||||||||||||
Sbjct 2035 ACCAACGTCGGACCCGTTGACTCTGTCTATAAGCTCGTCGTTAGG-CCTCCTTTGGGTGT 2093
Query 2094 CAAAATCTCTGTTACACCCAACACACTGCTCTTTAACTCCAATGTAAAGATACTCAGCTA 2153
|||||||||||| |||||||| ||| ||||||||||||||||||| |||| ||||||||
Sbjct 2094 CAAAATCTCTGTCACACCCAAAACATTGCTCTTTAACTCCAATGTCAAGAAACTCAGCT- 2152
Query 2154 T-AAGGTCACTGTCTCCACAACTCACAAATCCAACTCGATTTACTATTTTGGGAGCTTGA 2212
| ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2153 TCAAGGTCATTGTCTCCACAACTCACAAATCCAATTCGATTTACTATTTTGGGAGCTTGA 2212
Query 2213 CTTGGACTGATGGATCTCACAAAGTCACTATCCCATTATCTGTCAGGACACAAATGTTGA 2272
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2213 CTTGGACTGATGGCTCTCACAAAGTCACTATCCCATTATCTGTCAGGACACAAATGTTGA 2272
Query 2273 TGTACTTCGACCAGTGA 2289
|||||||||||||||||
Sbjct 2273 TGTACTTCGACCAGTGA 2289
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86198224435
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5