BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G11950.1
Length=923
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488037 jgi|Araly1|488037|fgenesh2_kg.6__1171__AT5G11950.1 1345 0.0
Ahg928093 jgi|Araly1|928093|scaffold_300550.1 195 7e-49
Ahg894539 jgi|Araly1|894539|Al_scaffold_0006_2535 148 5e-35
> Ahg488037 jgi|Araly1|488037|fgenesh2_kg.6__1171__AT5G11950.1
Length=858
Score = 1345 bits (728), Expect = 0.0
Identities = 827/872 (95%), Gaps = 18/872 (2%)
Strand=Plus/Plus
Query 42 ttctcttttttttttGTTTGACGACCTGAGGGAATACCTTGA-TTTGTAGATTTTTATCC 100
|||| |||||||||||||||||| | ||||||||||| |||| |||||||||||||||||
Sbjct 1 TTCTTTTTTTTTTTTGTTTGACGGCTTGAGGGAATACGTTGATTTTGTAGATTTTTATCC 60
Query 101 ATTAATGGAAGATAAT---CAGCGAAGCAGATTCAGAAAAATCTGTGTCTTTTGCGGAAG 157
| |||||||||||||| |||||| |||||||||||||||| ||||| |||||||||||
Sbjct 61 ACTAATGGAAGATAATAACCAGCGACGCAGATTCAGAAAAATTTGTGTGTTTTGCGGAAG 120
Query 158 CCACTCTGGTCACAGAGAAGTTTTCAGTGATGCTGCCATCGAACTCGGCAATGAACTCGT 217
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCACTCTGGTCACCGAGAAGTTTTCAGTGATGCTGCCATCGAACTCGGCAATGAACTCGT 180
Query 218 GAAGAGGAAGATAGATTTGGTTTATGGAGGAGGAAGTGTTGGATTGATGGGTTTGATATC 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GAAGAGGAAGATAGATTTGGTTTATGGAGGAGGAAGTGTTGGATTGATGGGTTTGATATC 240
Query 278 CAGGAGAGTCTATGAAGGTGGTTTACATGTACTTGGAATCATTCCCAAAGCTTTGATGCC 337
|||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||
Sbjct 241 CAGGAGAGTCTATGAAGGTGGTTTCCATGTACTCGGGATCATTCCCAAAGCTTTGATGCC 300
Query 338 AATTGAGATATCTGGTGAGACTGTGGGAGATGTAAGAGTTGTTGCAGACATGCATGAGCG 397
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AACTGAGATATCTGGTGAGACTGTGGGAGATGTAAGAGTTGTTGCAGACATGCATGAGCG 360
Query 398 AAAGGCTGCAATGGCACAGGAAGCTGAGGCCTTCATTGCACTCCCTGGAGGTTATGGAAC 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AAAGGCTGCAATGGCACAGGAAGCTGAGGCCTTCATTGCACTCCCTGGAGGTTATGGAAC 420
Query 458 AATGGAGGAGCTGTTGGAGATGATAACATGGTCACAACTTGGTATCCATAAGAAGACGGT 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AATGGAGGAGCTGTTGGAGATGATAACATGGTCACAACTTGGTATCCATAAGAAGACGGT 480
Query 518 TGGTCTATTGAATGTTGATGGGTACTATAACAATTTGCTTGCTTTATTTGATACCGGTGT 577
||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 481 TGGTCTACTGAATGTTGATGGATACTATAACAATTTGCTTGCTTTATTTGACACCGGTGT 540
Query 578 CGAAGAAGGTTTTATCAAGCCAGGTGCACGTAACATTGTGGTTTCTGCTCCAACAGCCAA 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CGAAGAAGGTTTTATCAAGCCAGGTGCACGTAACATTGTGGTTTCTGCTCCAACAGCCAA 600
Query 638 AGAGCTTATGGAGAAGATGGAGGAATATACTCCTTCACACATGCATGTTGCATCGCACGA 697
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 601 AGAGCTTATGGAGAAGATGGAGGAATATACTCCTTCACACAAGCAGGTTGCATCGCACGA 660
Query 698 AAGCTGGAAAGTTGAAGAACTCGGAGATTACCCGGGACAAGAAAACAAGCCGCAATAAAA 757
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 661 AAGCTGGAAAGTTGAAGAACTCGGAGATTACCCGGGACTACAAAACAAGCCGCAATAAAA 720
Query 758 GCAATTATTATTGTTTAGCATAAGCTATTTCCATTTCAAGTTTAGTCTCTAAATTATTTG 817
||| | ||||||||| ||||||||||||||||| |||||||||| |||
Sbjct 721 ----TTA-----G-----CATAAGCTACTTCCATTTCAAGTTTAGCCTCTAAATTAATTG 766
Query 818 CAGAATCCACAATGTGTATAAGAAAACTCAAATCTTGTTGCAATATGAAACAGCACATTG 877
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 767 CTGAATCCACAATGTGTATAAGAAAACTCAAATCTTGTTGCAATATGAAACAGCACATTG 826
Query 878 GGTCCCCAACATGAAAATGTTGCTGATTATGT 909
||| ||||| |||||| |||||||||||||||
Sbjct 827 GGTTCCCAAAATGAAAGTGTTGCTGATTATGT 858
> Ahg928093 jgi|Araly1|928093|scaffold_300550.1
Length=700
Score = 195 bits (105), Expect = 7e-49
Identities = 117/123 (95%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 515 GGTTGGTCTATTGAATGTTGATGGGTACTATAACAATTTGCTTGCTTTATTTGATACCGG 574
|||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||| |
Sbjct 404 GGTTGGTCTACTGAATGTTGATGGATACTATAACAATTTGCTTGCTTTATTTGACACCAG 463
Query 575 TGTCGAAGAAGGTTTTATCAAGCCAGGTGCACGTAACATTGTGGTTTCTGCTCCAACAGC 634
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 464 TTTCGAAGAAGGTTTTATCAAGCCAGGTGCACGTAACATTTTGGTTTCTGCTCCAACAGC 523
Query 635 CAA 637
|||
Sbjct 524 CAA 526
> Ahg894539 jgi|Araly1|894539|Al_scaffold_0006_2535
Length=612
Score = 148 bits (80), Expect = 5e-35
Identities = 100/110 (91%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 105 ATGGAAGATAATCAGCGAAGCAGATTCAGAAAAATCTGTGTCTTTTGCGGAAGCCACTCT 164
||||| || |||||| ||| || |||||| ||||||||||| ||||||||||| ||||||
Sbjct 1 ATGGAGGAAAATCAGAGAACCAAATTCAGTAAAATCTGTGTTTTTTGCGGAAGTCACTCT 60
Query 165 GGTCACAGAGAAGTTTTCAGTGATGCTGCCATCGAACTCGGCAATGAACT 214
||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 61 GGTCACAGAGAAGTTTTCAGTGATGCTGCAATCGAACTTGGCAATGAACT 110
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34234379466
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5