BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G11960.1
Length=1361
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940683 jgi|Araly1|940683|scaffold_601227.1 1792 0.0
> Ahg940683 jgi|Araly1|940683|scaffold_601227.1
Length=1078
Score = 1792 bits (970), Expect = 0.0
Identities = 1040/1074 (97%), Gaps = 4/1074 (0%)
Strand=Plus/Plus
Query 29 GTTTCTCGTCGGCGTTTTGAGAGACATGTGGGAATCGATTTGCCTAACGCTTGCGGCCAC 88
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 GTTTCTCGTCGGCGTTTTGAGAG--ATGTGGGAATCGATTTGCCTAACGCTTGCGGCCAC 58
Query 89 CGCCGGAAACAATATCGGCAAGGTTCTCCAGAAGAAGGGCACTATTATCCTCCCTCCTCT 148
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 59 CGCCGGCAACAATATCGGCAAAGTTCTCCAGAAGAAGGGCACTATTATCCTCCCTCCTCT 118
Query 149 CTCCCTTAAGCTTAAGGTGTTAAGAGCATATGCTGAAAACAAACCATGGGCGTTAGGTTT 208
|||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 119 CTCCCTCAAGCTTAAGGTGATAAGAGCATATGCTGTTAACAAACCATGGGCGTTAGGTTT 178
Query 209 TCTTATGGACATTGTTGGTGCTTTGTTGATGCTGAGAGCACTATCACTTGCTCCTGTGTC 268
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 179 TCTTATGGACATTGTTGGGGCTTTGTTGATGCTGAGAGCACTATCACTTGCCCCTGTGTC 238
Query 269 AGTTGTTCAGCCAGTCTCGGGATGTGGCCTTGCCATTCTTTCCGTCTTTTCGCATTTTTA 328
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 239 TGTTGTTCAGCCAGTCTCGGGGTGTGGACTTGCCATTCTTTCCGTCTTTTCGCATTTTTA 298
Query 329 TTTGAAGGAAGTCATGAATGTTTTTGACTGGATTGGGATTACTGTTGCCGGCATTGGGAC 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TTTGAAGGAAGTCATGAATGTTTTTGACTGGATTGGGATTACTGTTGCCGGCATTGGGAC 358
Query 389 CATAGGAGTTGGGGCTGGTGGTGAGGAGCAAGAAGCATCATTAATATCTGTCTTCCAGTT 448
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 359 CATAGGAGTTGGTGCTGGTGGTGAGGAGCAAGAAGCATCATTAATATCGGTCTTCCAGTT 418
Query 449 GCTGTGGCTAGCATTGGTTGTTGCCATCTTGTTTGTACTACTAAATGCGTGGCTTCATAT 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GCTGTGGCTAGCATTGGTTGTTGCCATCTTGTTTGTACTACTAAATGCGTGGCTTCATAT 478
Query 509 CTTCAAACGCCAGCGCAGGGAGCAGGAGCTGGGGGAATATGAAGTGGTGGAAGAAATCAT 568
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 479 CTTCAAACGCCAGCGCAGGGAGCAGGAGCTGGGGGAGTATGAAGTGGTGGAAGAAATTAT 538
Query 569 ATATGGCTTGGAATCTGGCATTTTATTCGGAATGGCATCTGTAGTATCAAAGATGGGTTT 628
|||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||
Sbjct 539 ATATGGCTTGGAATCTGGGATTTTATTCGGGATGGCATCTGTAGTATCGAAGATGGGTTT 598
Query 629 TGTATTCGTGGAGCAGGGATTTTCTACAATGTTCATTCCCATGTGCATTTCGATTAGTAT 688
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 599 TGTATTCGTGGAGCAGGGATTCTCTGCAATGTTCATTCCCATGTGCATTTCGATTAGTAT 658
Query 689 ATGCTGTAGTGGAACTGGATTTTTCTACCAGACTCGGGGACTAAAACATGGGAGAGCAAT 748
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 ATGCTGTAGTGGAACAGGATTTTTCTACCAGACTCGGGGACTAAAACATGGGAGAGCAAT 718
Query 749 CGTAGTATCCACTTGCGCTGCTGTGGCATCAATTGTAACAGGTGTGGTTGCAGGAATGTT 808
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 719 CGTAGTATCCACTTGCGCTGCTGTAGCATCAATTGTAACAGGTGTGGTTGCAGGAATGTT 778
Query 809 TGCTCTGGGTGAGAAATTACCCACTTCACCATCTGGACGGCTTTTACTTCTCCTGGGATG 868
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 779 TGCTCTGGGTGAGAAATTACCCAATTCACCATCTGGACGCCTTTTACTTCTCCTGGGATG 838
Query 869 GTTACTTATCATGCTAGGTGTTGTATTACTAGTGACTTCATCACGGCTTATCAGACATCT 928
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 839 GTTACTTATCATGCTAGGTGTTGTATTACTTGTGACTTCATCACGGCTTATCAGACATCT 898
Query 929 TCCACGGTCATTCCGGCGTTCAAGGCAAACCAGTTTAGAAAGAGGTTTCAACATAAGGCG 988
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 899 TCCACGGTCATTCCGGCGTTCCAGACAAACCAGTTTAGAAAGAGGTTTCAACATAAGGCG 958
Query 989 GACAACTTCTCACACACCAAAGGATACAAACCCAAGTGCGGTTATCCAGGCAGCAACATT 1048
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 959 GACACCTTCTCACACACCAAAGGATACAAACCCAAGTGCGGTTATCCAAGCAGCAACATT 1018
Query 1049 ACACCATCTCTTATCATCCCCATCAAAAGACAAAGACTAAATG-GATTCAGAAA 1101
|||||||||||||||||||||||||||||| |||||||||| | ||||||||||
Sbjct 1019 ACACCATCTCTTATCATCCCCATCAAAAGATAAAGACTAAA-GAGATTCAGAAA 1071
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50932217112
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5